Wall clock time and date at job start Sun Mar 29 2020 22:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 C 1.52996 * 109.47478 * 124.99802 * 3 2 1 5 5 C 1.50696 * 109.46949 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00332 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99743 * 179.97438 * 5 4 3 8 8 C 1.46506 * 119.99797 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47003 * 180.02562 * 8 7 5 10 10 H 1.09000 * 112.96730 * 306.67972 * 9 8 7 11 11 C 1.53950 * 113.77161 * 175.00147 * 9 8 7 12 12 C 1.53946 * 86.29200 * 222.09429 * 11 9 8 13 13 N 1.47577 * 113.77138 * 78.50679 * 9 8 7 14 14 C 1.36941 * 134.49174 * 318.94344 * 13 9 8 15 15 H 1.07998 * 120.00166 * 359.97438 * 14 13 9 16 16 C 1.38813 * 119.99923 * 179.97438 * 14 13 9 17 17 N 1.31618 * 120.00102 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99839 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47238 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47195 * 119.99984 * 18 16 14 21 21 H 1.48495 * 109.47069 * 239.99631 * 18 16 14 22 22 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 23 23 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 24 24 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.46714 * 244.99836 * 3 2 1 26 26 H 1.09000 * 109.46958 * 4.99415 * 3 2 1 27 27 H 1.09002 * 109.47176 * 299.99751 * 4 3 2 28 28 H 1.09001 * 109.46898 * 60.00143 * 4 3 2 29 29 H 0.96997 * 120.00417 * 0.02562 * 7 5 4 30 30 H 1.09002 * 109.47124 * 300.00093 * 8 7 5 31 31 H 1.09000 * 109.47024 * 59.99963 * 8 7 5 32 32 H 1.09002 * 113.73604 * 336.43788 * 11 9 8 33 33 H 1.08995 * 113.73983 * 107.63399 * 11 9 8 34 34 H 1.08989 * 113.77095 * 137.91007 * 12 11 9 35 35 H 1.09007 * 113.76671 * 269.30719 * 12 11 9 36 36 H 0.97004 * 119.99731 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7881 2.6385 1.1818 6 8 3.5696 3.4648 0.3214 7 7 4.7044 2.8876 2.1383 8 6 5.4369 4.1564 2.1383 9 6 6.4083 4.1845 3.3199 10 1 5.9240 3.9752 4.2737 11 6 7.3186 5.4257 3.3455 12 6 8.4541 4.4615 3.7338 13 7 7.6426 3.4079 3.0939 14 6 7.9227 2.1962 2.5205 15 1 7.1243 1.5952 2.1109 16 6 9.2327 1.7404 2.4658 17 7 10.2058 2.4731 2.9645 18 14 9.6145 0.0873 1.6843 19 1 8.3552 -0.5356 1.2034 20 1 10.5394 0.2830 0.5390 21 1 10.2526 -0.7999 2.6897 22 1 -0.5401 -0.9353 0.0004 23 1 -0.5400 0.9354 0.0044 24 1 1.8500 -0.9353 0.0004 25 1 2.6213 1.4025 -0.9314 26 1 1.3586 2.1317 0.0895 27 1 2.4772 1.2358 2.1130 28 1 3.7400 0.5066 1.0920 29 1 4.8794 2.2266 2.8263 30 1 5.9951 4.2536 1.2071 31 1 4.7319 4.9830 2.2272 32 1 7.4530 5.8915 2.3692 33 1 7.0624 6.1418 4.1263 34 1 9.3954 4.6626 3.2224 35 1 8.5722 4.3323 4.8097 36 1 11.1212 2.1547 2.9259 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754475269.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:51 Heat of formation + Delta-G solvation = 23.155748 kcal Electronic energy + Delta-G solvation = -16761.955766 eV Core-core repulsion = 14055.050095 eV Total energy + Delta-G solvation = -2706.905671 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.44547 -37.94082 -35.43427 -33.99408 -32.19818 -30.83626 -28.03448 -27.61511 -24.25355 -23.37839 -21.91162 -20.08851 -19.85448 -19.06042 -17.04945 -16.32859 -15.84454 -15.61663 -15.14950 -14.68144 -14.14693 -13.87787 -13.53358 -13.17992 -13.00904 -12.48089 -12.12064 -11.81824 -11.43401 -11.13136 -11.09913 -11.05771 -11.01259 -10.75736 -10.53664 -10.02176 -9.75767 -9.67733 -9.48999 -9.23884 -8.81603 -8.55474 -6.90502 -5.77870 -3.10289 2.14935 2.98891 3.36421 3.41145 3.44346 3.61437 4.41623 4.77750 4.91129 5.09977 5.12096 5.25548 5.33303 5.40532 5.60291 5.64392 5.73439 5.75692 5.91296 5.93654 6.10516 6.13752 6.32013 6.40356 6.51062 6.61829 6.66275 6.72342 6.91737 7.23912 7.40567 7.58413 7.92506 7.97279 8.59692 9.02990 9.69826 10.58335 11.38965 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.021423 B = 0.006304 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.695974 B = 4440.489477 C = 5538.370676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C -0.079 4.079 4 C -0.137 4.137 5 C 0.508 3.492 6 O -0.555 6.555 7 N -0.715 5.715 8 C 0.123 3.877 9 C 0.126 3.874 10 H 0.049 0.951 11 C -0.156 4.156 12 C 0.159 3.841 13 N -0.603 5.603 14 C -0.218 4.218 15 H 0.079 0.921 16 C -0.008 4.008 17 N -0.919 5.919 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.291 1.291 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.109 0.891 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.402 0.598 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.026 0.974 36 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.767 -1.144 -0.524 13.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.168 4.168 3 C -0.116 4.116 4 C -0.177 4.177 5 C 0.294 3.706 6 O -0.434 6.434 7 N -0.365 5.365 8 C -0.002 4.002 9 C 0.018 3.982 10 H 0.067 0.933 11 C -0.195 4.195 12 C 0.033 3.967 13 N -0.329 5.329 14 C -0.346 4.346 15 H 0.097 0.903 16 C -0.204 4.204 17 N -0.567 5.567 18 Si 0.738 3.262 19 H -0.206 1.206 20 H -0.217 1.217 21 H -0.218 1.218 22 H 0.113 0.887 23 H 0.114 0.886 24 H 0.127 0.873 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.237 0.763 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.689 -0.805 -1.239 13.769 hybrid contribution 0.456 -1.430 0.090 1.504 sum -13.234 -2.235 -1.148 13.470 Atomic orbital electron populations 1.23841 0.95966 1.01706 1.02075 1.23037 0.96082 0.98590 0.99076 1.20497 0.97761 0.95060 0.98325 1.21614 0.99040 0.96329 1.00748 1.20622 0.79949 0.88734 0.81256 1.90661 1.66716 1.48522 1.37454 1.46008 1.39685 1.20614 1.30221 1.21738 0.93368 0.84469 1.00612 1.22505 0.89399 0.91826 0.94470 0.93349 1.23772 0.98949 0.95827 1.00948 1.22199 0.95125 0.84064 0.95270 1.46081 1.00988 1.19437 1.66412 1.18990 0.92477 0.93298 1.29839 0.90324 1.24763 0.95657 0.98685 1.01331 1.69829 0.99210 1.37404 1.50218 0.86117 0.77997 0.83489 0.78566 1.20565 1.21733 1.21808 0.88660 0.88604 0.87324 0.90170 0.90858 0.89115 0.88744 0.76342 0.91075 0.92307 0.90528 0.92820 0.90822 0.95586 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.82 14.32 29.02 0.42 -1.41 16 2 C -0.15 -1.51 9.52 -36.02 -0.34 -1.85 16 3 C -0.08 -0.94 4.95 -27.88 -0.14 -1.08 16 4 C -0.14 -1.68 5.68 -27.89 -0.16 -1.84 16 5 C 0.51 8.37 7.83 -10.99 -0.09 8.28 16 6 O -0.55 -11.02 15.98 5.55 0.09 -10.93 16 7 N -0.72 -11.93 5.53 -60.29 -0.33 -12.27 16 8 C 0.12 2.23 5.54 -4.04 -0.02 2.21 16 9 C 0.13 2.41 4.33 -66.86 -0.29 2.12 16 10 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 11 C -0.16 -2.85 7.86 -25.80 -0.20 -3.05 16 12 C 0.16 3.63 7.52 -2.97 -0.02 3.61 16 13 N -0.60 -14.63 3.57 -170.76 -0.61 -15.24 16 14 C -0.22 -5.83 10.51 -15.06 -0.16 -5.99 16 15 H 0.08 2.01 7.80 -52.49 -0.41 1.60 16 16 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 17 N -0.92 -26.90 11.38 55.49 0.63 -26.27 16 18 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H 0.10 0.74 8.06 -52.49 -0.42 0.31 16 23 H 0.10 0.85 7.84 -52.48 -0.41 0.43 16 24 H 0.11 0.99 8.06 -52.49 -0.42 0.57 16 25 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 26 H 0.07 0.91 7.75 -51.93 -0.40 0.51 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.40 6.26 8.47 -40.82 -0.35 5.92 16 30 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.88 7.15 -51.94 -0.37 1.51 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 307.53 15.07 4.63 4.63 Total: -1.00 -31.42 307.53 -7.44 -38.85 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.72 Total: 3.67 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -1.10 Total: 0.67 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.31 Total: -53.78 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.42 -7.44 -38.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754475269.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.009 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds