Wall clock time and date at job start Sun Mar 29 2020 22:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 C 1.52996 * 109.47478 * 124.99802 * 3 2 1 5 5 C 1.50696 * 109.46949 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00332 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99743 * 179.97438 * 5 4 3 8 8 C 1.46506 * 119.99797 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47003 * 180.02562 * 8 7 5 10 10 H 1.09000 * 112.96730 * 306.67972 * 9 8 7 11 11 C 1.53950 * 113.77161 * 175.00147 * 9 8 7 12 12 C 1.53946 * 86.29200 * 222.09429 * 11 9 8 13 13 N 1.47577 * 113.77138 * 78.50679 * 9 8 7 14 14 C 1.36941 * 134.49174 * 318.94344 * 13 9 8 15 15 H 1.07998 * 120.00166 * 359.97438 * 14 13 9 16 16 C 1.38813 * 119.99923 * 179.97438 * 14 13 9 17 17 N 1.31618 * 120.00102 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99839 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47238 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47195 * 119.99984 * 18 16 14 21 21 H 1.48495 * 109.47069 * 239.99631 * 18 16 14 22 22 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 23 23 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 24 24 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.46714 * 244.99836 * 3 2 1 26 26 H 1.09000 * 109.46958 * 4.99415 * 3 2 1 27 27 H 1.09002 * 109.47176 * 299.99751 * 4 3 2 28 28 H 1.09001 * 109.46898 * 60.00143 * 4 3 2 29 29 H 0.96997 * 120.00417 * 0.02562 * 7 5 4 30 30 H 1.09002 * 109.47124 * 300.00093 * 8 7 5 31 31 H 1.09000 * 109.47024 * 59.99963 * 8 7 5 32 32 H 1.09002 * 113.73604 * 336.43788 * 11 9 8 33 33 H 1.08995 * 113.73983 * 107.63399 * 11 9 8 34 34 H 1.08989 * 113.77095 * 137.91007 * 12 11 9 35 35 H 1.09007 * 113.76671 * 269.30719 * 12 11 9 36 36 H 0.97004 * 119.99731 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7881 2.6385 1.1818 6 8 3.5696 3.4648 0.3214 7 7 4.7044 2.8876 2.1383 8 6 5.4369 4.1564 2.1383 9 6 6.4083 4.1845 3.3199 10 1 5.9240 3.9752 4.2737 11 6 7.3186 5.4257 3.3455 12 6 8.4541 4.4615 3.7338 13 7 7.6426 3.4079 3.0939 14 6 7.9227 2.1962 2.5205 15 1 7.1243 1.5952 2.1109 16 6 9.2327 1.7404 2.4658 17 7 10.2058 2.4731 2.9645 18 14 9.6145 0.0873 1.6843 19 1 8.3552 -0.5356 1.2034 20 1 10.5394 0.2830 0.5390 21 1 10.2526 -0.7999 2.6897 22 1 -0.5401 -0.9353 0.0004 23 1 -0.5400 0.9354 0.0044 24 1 1.8500 -0.9353 0.0004 25 1 2.6213 1.4025 -0.9314 26 1 1.3586 2.1317 0.0895 27 1 2.4772 1.2358 2.1130 28 1 3.7400 0.5066 1.0920 29 1 4.8794 2.2266 2.8263 30 1 5.9951 4.2536 1.2071 31 1 4.7319 4.9830 2.2272 32 1 7.4530 5.8915 2.3692 33 1 7.0624 6.1418 4.1263 34 1 9.3954 4.6626 3.2224 35 1 8.5722 4.3323 4.8097 36 1 11.1212 2.1547 2.9259 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754475269.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:51 Heat of formation + Delta-G solvation = 2.537846 kcal Electronic energy + Delta-G solvation = -16762.849826 eV Core-core repulsion = 14055.050095 eV Total energy + Delta-G solvation = -2707.799730 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.81718 -39.57972 -36.33711 -35.44336 -34.18970 -31.82277 -29.89097 -29.11601 -25.37646 -25.28605 -23.41776 -21.44988 -20.73958 -20.64330 -18.72353 -17.76149 -17.16746 -17.05329 -16.67386 -15.91921 -15.69676 -15.42303 -14.98960 -14.57000 -14.39072 -13.58881 -13.44553 -13.28760 -13.00374 -12.96236 -12.67546 -12.56867 -12.26777 -12.00518 -11.89131 -11.82879 -11.50904 -11.36346 -10.85003 -10.77431 -10.20392 -9.97983 -8.87383 -7.85682 -5.17369 1.40762 1.44530 1.45899 1.54498 1.69736 2.32783 2.49488 3.34345 3.40175 3.77729 3.99162 4.01643 4.14451 4.19402 4.36276 4.41589 4.47536 4.64090 4.69453 4.74144 4.89753 4.94047 5.06377 5.09064 5.11740 5.22680 5.35089 5.50525 5.62819 5.75913 5.77153 5.91994 5.99321 6.62277 6.96783 7.30118 7.66895 8.61596 9.31492 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.021423 B = 0.006304 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.695974 B = 4440.489477 C = 5538.370676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.161 4.161 3 C -0.076 4.076 4 C -0.128 4.128 5 C 0.504 3.496 6 O -0.593 6.593 7 N -0.714 5.714 8 C 0.132 3.868 9 C 0.133 3.867 10 H 0.073 0.927 11 C -0.132 4.132 12 C 0.149 3.851 13 N -0.630 5.630 14 C -0.212 4.212 15 H 0.087 0.913 16 C -0.073 4.073 17 N -0.956 5.956 18 Si 0.967 3.033 19 H -0.263 1.263 20 H -0.300 1.300 21 H -0.294 1.294 22 H 0.113 0.887 23 H 0.096 0.904 24 H 0.120 0.880 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.118 0.882 28 H 0.106 0.894 29 H 0.409 0.591 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.037 0.963 35 H 0.023 0.977 36 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.001 -1.927 -0.062 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.179 4.179 3 C -0.114 4.114 4 C -0.168 4.168 5 C 0.292 3.708 6 O -0.474 6.474 7 N -0.364 5.364 8 C 0.006 3.994 9 C 0.027 3.973 10 H 0.090 0.910 11 C -0.171 4.171 12 C 0.024 3.976 13 N -0.356 5.356 14 C -0.340 4.340 15 H 0.105 0.895 16 C -0.265 4.265 17 N -0.606 5.606 18 Si 0.796 3.204 19 H -0.187 1.187 20 H -0.228 1.228 21 H -0.221 1.221 22 H 0.131 0.869 23 H 0.114 0.886 24 H 0.138 0.862 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.125 0.875 29 H 0.245 0.755 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.056 0.944 35 H 0.041 0.959 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -15.971 -1.592 -0.761 16.068 hybrid contribution 1.062 -1.121 -0.046 1.545 sum -14.909 -2.713 -0.807 15.175 Atomic orbital electron populations 1.24040 0.95755 1.02631 1.00253 1.22977 0.96373 0.97902 1.00667 1.20429 0.97498 0.96057 0.97369 1.21643 0.99051 0.93911 1.02175 1.21372 0.79516 0.89694 0.80194 1.90645 1.67840 1.50142 1.38817 1.46013 1.39512 1.20302 1.30622 1.21503 0.93380 0.86026 0.98452 1.22671 0.88304 0.90827 0.95513 0.90992 1.23569 0.95748 0.95649 1.02088 1.22166 0.95134 0.85763 0.94525 1.46434 1.03654 1.19107 1.66445 1.19373 0.92504 0.93895 1.28243 0.89504 1.25528 0.95940 1.01979 1.03060 1.70014 0.99050 1.38985 1.52512 0.85166 0.77998 0.80027 0.77159 1.18693 1.22809 1.22140 0.86896 0.88557 0.86180 0.92062 0.91752 0.86426 0.87532 0.75515 0.94363 0.90435 0.90568 0.88767 0.94409 0.95943 0.94665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.98 14.32 67.79 0.97 -2.01 16 2 C -0.16 -2.87 9.52 25.65 0.24 -2.62 16 3 C -0.08 -1.71 4.95 29.85 0.15 -1.56 16 4 C -0.13 -2.85 5.68 29.85 0.17 -2.68 16 5 C 0.50 15.84 7.83 87.66 0.69 16.52 16 6 O -0.59 -23.25 15.98 -3.04 -0.05 -23.30 16 7 N -0.71 -22.45 5.53 -463.05 -2.56 -25.01 16 8 C 0.13 4.56 5.54 86.38 0.48 5.04 16 9 C 0.13 4.80 4.33 45.09 0.20 4.99 16 10 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 11 C -0.13 -4.55 7.86 31.26 0.25 -4.30 16 12 C 0.15 6.85 7.52 86.48 0.65 7.50 16 13 N -0.63 -30.22 3.57 -694.16 -2.48 -32.70 16 14 C -0.21 -11.22 10.51 84.03 0.88 -10.33 16 15 H 0.09 4.34 7.80 -2.91 -0.02 4.32 16 16 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 17 N -0.96 -57.39 11.38 21.65 0.25 -57.14 16 18 Si 0.97 45.36 29.55 68.60 2.03 47.39 16 19 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 22 H 0.11 1.38 8.06 -2.91 -0.02 1.36 16 23 H 0.10 1.49 7.84 -2.91 -0.02 1.46 16 24 H 0.12 1.86 8.06 -2.91 -0.02 1.84 16 25 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 26 H 0.06 1.54 7.75 -2.39 -0.02 1.52 16 27 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.41 11.72 8.47 -92.71 -0.79 10.94 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.08 2.65 8.10 -2.39 -0.02 2.63 16 33 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.04 1.99 7.15 -2.39 -0.02 1.97 16 35 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -68.71 307.53 2.58 -66.13 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.26 Total: 17.69 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 5.14 Total: 6.95 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -4.79 Total: -114.85 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.05 Total: -23.30 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -68.71 2.58 -66.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754475269.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.663 kcal (2) G-P(sol) polarization free energy of solvation -68.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds