Wall clock time and date at job start Sun Mar 29 2020 22:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 120.00397 * 2 1 4 4 C 1.53001 * 109.47388 * 124.99929 * 3 2 1 5 5 C 1.50693 * 109.47282 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00130 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00211 * 180.02562 * 5 4 3 8 8 C 1.46497 * 120.00059 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47130 * 179.97438 * 8 7 5 10 10 H 1.09003 * 112.77560 * 56.27788 * 9 8 7 11 11 C 1.53755 * 113.55568 * 187.13196 * 9 8 7 12 12 C 1.53489 * 83.25826 * 140.98933 * 11 9 8 13 13 N 1.47063 * 87.98878 * 333.76510 * 12 11 9 14 14 C 1.36933 * 136.06263 * 207.08610 * 13 12 11 15 15 H 1.07993 * 120.00338 * 173.06400 * 14 13 12 16 16 C 1.38819 * 119.99623 * 352.79306 * 14 13 12 17 17 N 1.31619 * 119.99806 * 352.77041 * 16 14 13 18 18 Si 1.86799 * 119.99923 * 172.77398 * 16 14 13 19 19 H 1.48502 * 109.46853 * 94.80292 * 18 16 14 20 20 H 1.48497 * 109.47179 * 214.80274 * 18 16 14 21 21 H 1.48496 * 109.47153 * 334.80488 * 18 16 14 22 22 H 1.07995 * 120.00229 * 180.02562 * 1 2 3 23 23 H 1.07997 * 119.99731 * 359.97438 * 1 2 3 24 24 H 1.08003 * 120.00161 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.46623 * 5.00569 * 3 2 1 26 26 H 1.09000 * 109.47099 * 245.00187 * 3 2 1 27 27 H 1.09003 * 109.47070 * 60.00028 * 4 3 2 28 28 H 1.09002 * 109.47080 * 300.00962 * 4 3 2 29 29 H 0.97004 * 119.99926 * 359.97438 * 7 5 4 30 30 H 1.08994 * 109.47377 * 59.99712 * 8 7 5 31 31 H 1.09000 * 109.46871 * 299.99555 * 8 7 5 32 32 H 1.09002 * 114.39060 * 27.42145 * 11 9 8 33 33 H 1.09007 * 114.26448 * 254.54500 * 11 9 8 34 34 H 1.09001 * 113.46658 * 218.98084 * 12 11 9 35 35 H 1.08996 * 113.52345 * 88.55540 * 12 11 9 36 36 H 0.97000 * 119.99955 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7882 2.6383 1.1820 6 8 3.5691 3.4651 0.3221 7 7 4.7053 2.8870 2.1378 8 6 5.4370 4.1562 2.1384 9 6 6.4086 4.1841 3.3200 10 1 7.0994 3.3410 3.3182 11 6 7.1015 5.5429 3.5137 12 6 6.8962 5.2315 5.0026 13 7 5.7481 4.3974 4.6166 14 6 4.5807 3.9926 5.2068 15 1 3.8448 3.4501 4.6319 16 6 4.3457 4.2746 6.5455 17 7 5.2986 4.8028 7.2839 18 14 2.6770 3.9042 7.2991 19 1 2.7124 2.5692 7.9484 20 1 2.3510 4.9392 8.3128 21 1 1.6412 3.9099 6.2350 22 1 -0.5400 -0.9352 0.0004 23 1 -0.5399 0.9353 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3586 2.1316 0.0897 26 1 2.6213 1.4026 -0.9314 27 1 3.7400 0.5065 1.0921 28 1 2.4773 1.2355 2.1130 29 1 4.8802 2.2259 2.8258 30 1 4.7316 4.9822 2.2289 31 1 5.9943 4.2547 1.2069 32 1 6.5278 6.3964 3.1523 33 1 8.1456 5.5620 3.2009 34 1 6.6194 6.1040 5.5944 35 1 7.7151 4.6646 5.4454 36 1 5.1346 4.9995 8.2195 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754475270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:53 Heat of formation + Delta-G solvation = 26.044633 kcal Electronic energy + Delta-G solvation = -16797.589676 eV Core-core repulsion = 14090.809276 eV Total energy + Delta-G solvation = -2706.780400 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.45968 -38.11110 -35.41630 -33.97782 -32.24785 -30.82076 -28.08127 -27.59642 -24.20760 -23.49306 -21.78203 -20.06436 -19.83891 -19.19428 -17.03394 -16.30001 -15.87804 -15.59911 -15.13692 -14.66965 -14.16133 -13.78421 -13.60658 -13.28739 -12.78923 -12.53764 -12.17310 -11.77298 -11.52292 -11.20413 -11.08977 -11.04895 -10.98337 -10.78203 -10.57197 -10.04170 -9.86706 -9.64355 -9.43278 -9.14389 -8.80344 -8.53124 -6.92745 -5.81968 -3.12787 2.17429 3.00058 3.35072 3.41707 3.43329 3.63453 4.41106 4.79635 4.91510 5.15171 5.16790 5.26484 5.33854 5.39787 5.53517 5.62220 5.75856 5.78642 5.90520 5.95933 6.10965 6.15268 6.31314 6.39071 6.52929 6.57642 6.68801 6.73173 6.92995 7.18104 7.36899 7.51041 7.92884 7.94804 8.61095 8.99471 9.66803 10.61040 11.36504 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019706 B = 0.006727 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.555596 B = 4161.247703 C = 5381.141302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C -0.078 4.078 4 C -0.137 4.137 5 C 0.508 3.492 6 O -0.556 6.556 7 N -0.715 5.715 8 C 0.122 3.878 9 C 0.125 3.875 10 H 0.047 0.953 11 C -0.162 4.162 12 C 0.158 3.842 13 N -0.600 5.600 14 C -0.216 4.216 15 H 0.081 0.919 16 C -0.006 4.006 17 N -0.917 5.917 18 Si 0.907 3.093 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.280 1.280 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.108 0.892 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.404 0.596 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.030 0.970 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.728 -7.066 -10.962 13.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.170 4.170 3 C -0.116 4.116 4 C -0.177 4.177 5 C 0.294 3.706 6 O -0.435 6.435 7 N -0.365 5.365 8 C -0.003 4.003 9 C 0.018 3.982 10 H 0.064 0.936 11 C -0.201 4.201 12 C 0.033 3.967 13 N -0.326 5.326 14 C -0.344 4.344 15 H 0.098 0.902 16 C -0.203 4.203 17 N -0.563 5.563 18 Si 0.737 3.263 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.205 1.205 22 H 0.114 0.886 23 H 0.115 0.885 24 H 0.126 0.874 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.238 0.762 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.124 -6.488 -11.274 13.180 hybrid contribution -0.722 -0.697 1.052 1.454 sum -2.845 -7.185 -10.222 12.815 Atomic orbital electron populations 1.23864 0.96025 1.01797 1.01631 1.23003 0.96093 0.98446 0.99483 1.20491 0.97859 0.95208 0.98031 1.21615 0.99022 0.95977 1.01133 1.20624 0.79782 0.88841 0.81329 1.90655 1.66183 1.48524 1.38115 1.46014 1.40261 1.20449 1.29754 1.21762 0.94661 0.85725 0.98142 1.22459 0.92362 0.95980 0.87426 0.93550 1.23697 0.98660 0.97052 1.00664 1.21898 0.88896 0.94566 0.91373 1.45801 1.17725 1.56776 1.12307 1.18873 0.91292 1.31774 0.92427 0.90172 1.24816 0.97854 1.01792 0.95867 1.69856 1.31258 1.48452 1.06775 0.86180 0.83526 0.77514 0.79040 1.21634 1.21573 1.20537 0.88645 0.88521 0.87416 0.90758 0.90357 0.89076 0.88770 0.76191 0.91266 0.92389 0.90234 0.92273 0.92279 0.95266 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.91 14.32 29.02 0.42 -1.49 16 2 C -0.15 -1.55 9.52 -36.02 -0.34 -1.89 16 3 C -0.08 -0.94 4.95 -27.88 -0.14 -1.08 16 4 C -0.14 -1.71 5.68 -27.89 -0.16 -1.87 16 5 C 0.51 8.42 7.83 -10.99 -0.09 8.33 16 6 O -0.56 -11.05 15.98 5.56 0.09 -10.96 16 7 N -0.71 -12.06 5.33 -60.30 -0.32 -12.38 16 8 C 0.12 2.21 5.53 -4.04 -0.02 2.19 16 9 C 0.13 2.41 4.11 -72.27 -0.30 2.11 16 10 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 11 C -0.16 -2.92 8.04 -26.09 -0.21 -3.13 16 12 C 0.16 3.61 7.19 -8.52 -0.06 3.55 16 13 N -0.60 -14.56 3.63 -176.87 -0.64 -15.20 16 14 C -0.22 -5.77 10.54 -15.06 -0.16 -5.92 16 15 H 0.08 2.05 7.62 -52.49 -0.40 1.65 16 16 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 17 N -0.92 -26.87 11.87 55.49 0.66 -26.21 16 18 Si 0.91 21.85 29.56 -169.99 -5.02 16.82 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H 0.10 0.78 8.06 -52.49 -0.42 0.36 16 23 H 0.10 0.95 7.84 -52.49 -0.41 0.53 16 24 H 0.11 0.94 8.06 -52.48 -0.42 0.51 16 25 H 0.07 0.99 7.75 -51.93 -0.40 0.59 16 26 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.40 6.47 8.47 -40.82 -0.35 6.12 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.42 8.13 -51.93 -0.42 1.00 16 33 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 34 H 0.06 1.49 7.65 -51.93 -0.40 1.09 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 307.88 15.07 4.64 4.64 Total: -1.00 -31.42 307.88 -7.50 -38.92 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.74 Total: 3.85 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.15 Total: 0.52 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.30 Total: -53.79 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.42 -7.50 -38.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754475270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.963 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds