Wall clock time and date at job start Sun Mar 29 2020 22:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32994 * 119.99739 * 2 1 4 4 C 1.50707 * 119.99811 * 179.97438 * 3 2 1 5 5 C 1.47099 * 120.00557 * 359.97438 * 3 2 1 6 6 O 1.21617 * 119.99637 * 0.02562 * 5 3 2 7 7 N 1.34773 * 120.00565 * 180.02562 * 5 3 2 8 8 C 1.46500 * 120.00008 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.46948 * 174.94227 * 8 7 5 10 10 N 1.46505 * 115.55024 * 80.38544 * 9 8 7 11 11 C 1.36938 * 119.99737 * 65.27445 * 10 9 8 12 12 H 1.07997 * 120.00128 * 354.73939 * 11 10 9 13 13 C 1.38813 * 120.00038 * 174.45800 * 11 10 9 14 14 N 1.31610 * 120.00100 * 180.02562 * 13 11 10 15 15 Si 1.86809 * 119.99785 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47097 * 89.99641 * 15 13 11 17 17 H 1.48496 * 109.46771 * 210.00033 * 15 13 11 18 18 H 1.48500 * 109.46838 * 329.99409 * 15 13 11 19 19 C 1.52995 * 117.49872 * 226.05876 * 9 8 7 20 20 C 1.53002 * 117.49982 * 294.71995 * 9 8 7 21 21 H 1.08998 * 109.46868 * 60.00770 * 1 2 3 22 22 H 1.08997 * 109.46844 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47246 * 300.00785 * 1 2 3 24 24 H 1.07993 * 120.00080 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.46991 * 269.99620 * 4 3 2 26 26 H 1.08998 * 109.47188 * 29.99321 * 4 3 2 27 27 H 1.08998 * 109.47169 * 149.99710 * 4 3 2 28 28 H 0.97001 * 119.99786 * 359.97438 * 7 5 3 29 29 H 1.08994 * 109.47255 * 54.94194 * 8 7 5 30 30 H 1.08999 * 109.46673 * 294.93754 * 8 7 5 31 31 H 0.97005 * 120.00198 * 245.27498 * 10 9 8 32 32 H 0.97005 * 119.99848 * 180.02562 * 14 13 11 33 33 H 1.09007 * 117.49708 * 215.00165 * 19 9 8 34 34 H 1.08996 * 117.50212 * 0.02562 * 19 9 8 35 35 H 1.08996 * 117.49829 * 359.97156 * 20 9 8 36 36 H 1.08994 * 117.49914 * 144.97651 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6790 1.1518 0.0006 5 6 1.4365 2.4257 -0.0006 6 8 0.2203 2.4257 -0.0006 7 7 2.1103 3.5929 -0.0011 8 6 1.3777 4.8616 -0.0011 9 6 2.3672 6.0218 0.1254 10 7 3.0423 6.4145 -1.1140 11 6 2.3191 6.9434 -2.1496 12 1 1.2421 6.9927 -2.0864 13 6 2.9707 7.4217 -3.2782 14 7 2.2757 7.9305 -4.2733 15 14 4.8341 7.3430 -3.3845 16 1 5.2409 6.0543 -4.0000 17 1 5.3302 8.4679 -4.2173 18 1 5.4124 7.4445 -2.0204 19 6 2.0350 7.1272 1.1297 20 6 3.1611 6.1343 1.4285 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8899 24 1 2.0470 -0.9352 0.0004 25 1 4.0419 1.1521 1.0284 26 1 4.0425 0.2617 -0.5128 27 1 4.0425 2.0416 -0.5133 28 1 3.0803 3.5930 -0.0007 29 1 0.6852 4.8813 0.8403 30 1 0.8205 4.9593 -0.9328 31 1 4.0016 6.2999 -1.2011 32 1 2.7311 8.2643 -5.0621 33 1 2.3188 8.1467 0.8683 34 1 1.1119 7.0277 1.7007 35 1 2.9782 5.3821 2.1958 36 1 4.1858 6.5002 1.3635 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754512176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:27 Heat of formation + Delta-G solvation = -7.725987 kcal Electronic energy + Delta-G solvation = -17031.186721 eV Core-core repulsion = 14322.941918 eV Total energy + Delta-G solvation = -2708.244804 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.98757 -39.19000 -35.91460 -35.43319 -34.88404 -32.37765 -31.01626 -28.10246 -25.76673 -25.62771 -23.52469 -22.81621 -20.98236 -19.95718 -19.69100 -17.38755 -17.25697 -16.63171 -16.27892 -16.00335 -15.45303 -15.06013 -14.74469 -14.44691 -14.38790 -14.03650 -13.66719 -13.46156 -13.39350 -13.09329 -12.89309 -12.79505 -12.37182 -12.32374 -12.27753 -11.82782 -11.68046 -11.01297 -10.90276 -10.47234 -10.19658 -9.75056 -9.34658 -8.03006 -5.39250 0.47878 1.36442 1.40973 1.48312 2.23796 2.32665 2.47328 3.01126 3.26225 3.39858 3.77509 3.83322 3.98946 4.13603 4.24606 4.40054 4.52704 4.73407 4.78653 4.80871 4.82448 4.85037 4.91178 5.01063 5.04937 5.13946 5.26837 5.34541 5.47240 5.57607 5.70442 5.78190 6.20112 6.66479 7.05790 7.30652 7.79226 7.99389 9.18516 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.023898 B = 0.006548 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.348096 B = 4275.332194 C = 4559.028264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.208 4.208 4 C -0.111 4.111 5 C 0.532 3.468 6 O -0.584 6.584 7 N -0.705 5.705 8 C 0.161 3.839 9 C 0.099 3.901 10 N -0.714 5.714 11 C -0.225 4.225 12 H 0.050 0.950 13 C -0.064 4.064 14 N -0.985 5.985 15 Si 0.958 3.042 16 H -0.278 1.278 17 H -0.299 1.299 18 H -0.245 1.245 19 C -0.186 4.186 20 C -0.144 4.144 21 H 0.052 0.948 22 H 0.077 0.923 23 H 0.061 0.939 24 H 0.162 0.838 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.409 0.591 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.370 0.630 32 H 0.257 0.743 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.880 -14.936 13.779 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.083 4.083 3 C -0.211 4.211 4 C -0.167 4.167 5 C 0.323 3.677 6 O -0.467 6.467 7 N -0.355 5.355 8 C 0.035 3.965 9 C 0.007 3.993 10 N -0.356 5.356 11 C -0.355 4.355 12 H 0.068 0.932 13 C -0.255 4.255 14 N -0.635 5.635 15 Si 0.785 3.215 16 H -0.204 1.204 17 H -0.226 1.226 18 H -0.170 1.170 19 C -0.226 4.226 20 C -0.182 4.182 21 H 0.071 0.929 22 H 0.095 0.905 23 H 0.080 0.920 24 H 0.179 0.821 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.246 0.754 29 H 0.089 0.911 30 H 0.049 0.951 31 H 0.205 0.795 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.138 0.862 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.878 -14.808 13.645 20.718 hybrid contribution 0.905 0.674 -0.930 1.463 sum 5.783 -14.133 12.715 19.871 Atomic orbital electron populations 1.20955 0.93047 1.01650 1.02081 1.23916 0.96551 0.97682 0.90163 1.21638 0.97973 0.91745 1.09748 1.20807 0.88599 1.03683 1.03626 1.19143 0.87184 0.85389 0.75967 1.90746 1.15370 1.88284 1.52274 1.45824 1.10889 1.04879 1.73957 1.20874 0.93486 0.82044 1.00116 1.20267 0.99463 0.96161 0.83431 1.41940 1.05871 1.75483 1.12318 1.18851 0.91318 1.30707 0.94666 0.93214 1.25542 1.02866 1.00789 0.96334 1.69901 1.36651 1.48428 1.08524 0.85374 0.80422 0.77145 0.78597 1.20405 1.22621 1.16961 1.23385 1.00384 0.95858 1.02950 1.23233 0.97014 1.01990 0.95950 0.92894 0.90454 0.92029 0.82072 0.89409 0.89313 0.92234 0.75390 0.91073 0.95130 0.79506 0.93383 0.89919 0.87827 0.86198 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 8.45 71.24 0.60 -2.25 16 2 C -0.06 -1.28 9.95 24.52 0.24 -1.03 16 3 C -0.21 -4.89 6.00 -18.70 -0.11 -5.01 16 4 C -0.11 -1.79 9.61 71.24 0.68 -1.11 16 5 C 0.53 17.33 7.72 86.57 0.67 18.00 16 6 O -0.58 -23.08 13.07 -4.08 -0.05 -23.13 16 7 N -0.70 -22.15 5.46 -466.72 -2.55 -24.70 16 8 C 0.16 5.95 5.73 86.38 0.49 6.44 16 9 C 0.10 3.54 2.15 3.60 0.01 3.55 16 10 N -0.71 -31.83 5.29 -303.34 -1.60 -33.43 16 11 C -0.22 -12.69 10.05 84.03 0.84 -11.85 16 12 H 0.05 3.18 7.99 -2.91 -0.02 3.15 16 13 C -0.06 -3.76 5.50 84.86 0.47 -3.29 16 14 N -0.98 -63.60 13.97 21.65 0.30 -63.30 16 15 Si 0.96 44.41 27.68 68.60 1.90 46.31 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 18 H -0.25 -9.99 6.60 99.48 0.66 -9.33 16 19 C -0.19 -5.94 10.11 30.62 0.31 -5.63 16 20 C -0.14 -3.78 10.14 30.62 0.31 -3.47 16 21 H 0.05 1.56 7.22 -2.39 -0.02 1.55 16 22 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.06 1.67 7.22 -2.39 -0.02 1.66 16 24 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 25 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.09 1.09 8.07 -2.39 -0.02 1.08 16 27 H 0.06 1.06 6.70 -2.39 -0.02 1.04 16 28 H 0.41 10.90 6.58 -92.71 -0.61 10.29 16 29 H 0.07 2.48 7.94 -2.39 -0.02 2.46 16 30 H 0.03 1.41 7.72 -2.39 -0.02 1.40 16 31 H 0.37 15.46 5.96 -92.70 -0.55 14.90 16 32 H 0.26 15.83 8.31 -92.70 -0.77 15.06 16 33 H 0.08 2.92 8.14 -2.38 -0.02 2.90 16 34 H 0.10 2.93 8.08 -2.39 -0.02 2.91 16 35 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -73.29 302.23 2.38 -70.91 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -0.13 Total: 32.97 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 4.52 Total: -5.64 kcal Atomic # 7 Polarization: -117.58 SS G_CDS: -3.85 Total: -121.43 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.90 Total: 46.31 kcal Total: -73.29 2.38 -70.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754512176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.185 kcal (2) G-P(sol) polarization free energy of solvation -73.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds