Wall clock time and date at job start Sun Mar 29 2020 22:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.32994 * 120.00171 * 2 1 4 4 C 1.50699 * 119.99681 * 0.02562 * 3 2 1 5 5 C 1.47099 * 120.00008 * 180.02562 * 3 2 1 6 6 O 1.21617 * 120.00229 * 4.76662 * 5 3 2 7 7 N 1.34775 * 119.99741 * 184.77040 * 5 3 2 8 8 C 1.46511 * 119.99794 * 174.60579 * 7 5 3 9 9 C 1.52997 * 109.47062 * 184.83712 * 8 7 5 10 10 N 1.46502 * 115.54563 * 259.54247 * 9 8 7 11 11 C 1.36937 * 119.99786 * 294.34240 * 10 9 8 12 12 H 1.08002 * 120.00080 * 4.89392 * 11 10 9 13 13 C 1.38810 * 119.99988 * 184.89719 * 11 10 9 14 14 N 1.31616 * 120.00212 * 5.15647 * 13 11 10 15 15 Si 1.86804 * 119.99782 * 185.15952 * 13 11 10 16 16 H 1.48497 * 109.47238 * 5.00148 * 15 13 11 17 17 H 1.48499 * 109.46883 * 125.00300 * 15 13 11 18 18 H 1.48499 * 109.46880 * 244.99733 * 15 13 11 19 19 C 1.52997 * 117.50232 * 113.86902 * 9 8 7 20 20 C 1.52997 * 117.49833 * 45.20510 * 9 8 7 21 21 H 1.09004 * 109.46838 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46504 * 300.00187 * 1 2 3 23 23 H 1.08994 * 109.46904 * 59.99973 * 1 2 3 24 24 H 1.08004 * 119.99918 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47204 * 265.18569 * 4 3 2 26 26 H 1.08996 * 109.47501 * 25.18661 * 4 3 2 27 27 H 1.09005 * 109.47179 * 145.18879 * 4 3 2 28 28 H 0.96993 * 120.00694 * 354.32450 * 7 5 3 29 29 H 1.08998 * 109.46857 * 304.83708 * 8 7 5 30 30 H 1.08996 * 109.46834 * 64.83460 * 8 7 5 31 31 H 0.97000 * 120.00176 * 114.35248 * 10 9 8 32 32 H 0.97004 * 119.99990 * 180.02562 * 14 13 11 33 33 H 1.09004 * 117.49592 * 359.97438 * 19 9 8 34 34 H 1.08994 * 117.49987 * 145.01990 * 19 9 8 35 35 H 1.09005 * 117.50052 * 214.98197 * 20 9 8 36 36 H 1.09001 * 117.50469 * 359.97438 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 1.4185 2.4568 0.0006 5 6 3.6431 1.1517 -0.0006 6 8 4.2511 0.1021 -0.0886 7 7 4.3170 2.3148 0.0965 8 6 5.7772 2.3077 0.2150 9 6 6.2785 3.7371 0.4298 10 7 6.8165 4.4033 -0.7589 11 6 7.9605 3.9345 -1.3476 12 1 8.4224 3.0283 -0.9845 13 6 8.5267 4.6242 -2.4110 14 7 8.0235 5.7804 -2.7881 15 14 10.0026 3.9110 -3.3068 16 1 10.2984 2.5569 -2.7739 17 1 9.7028 3.8172 -4.7582 18 1 11.1800 4.7923 -3.1006 19 6 6.9265 4.0637 1.7768 20 6 5.5319 4.6021 1.4473 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 2.0471 -0.9353 -0.0004 25 1 1.3112 2.8148 -1.0233 26 1 0.4317 2.3064 0.4382 27 1 1.9678 3.1933 0.5872 28 1 3.8356 3.1568 0.0838 29 1 6.0698 1.6887 1.0632 30 1 6.2138 1.9028 -0.6979 31 1 6.3624 5.1765 -1.1289 32 1 8.4189 6.2621 -3.5315 33 1 6.9953 3.2602 2.5101 34 1 7.7528 4.7744 1.7786 35 1 5.4414 5.6669 1.2325 36 1 4.6833 4.1530 1.9634 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754512177.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:30 Heat of formation + Delta-G solvation = 7.847122 kcal Electronic energy + Delta-G solvation = -16777.557526 eV Core-core repulsion = 14069.988023 eV Total energy + Delta-G solvation = -2707.569503 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.62740 -37.58665 -35.48291 -33.82299 -32.95449 -29.75572 -29.58169 -26.69652 -25.88466 -23.88735 -22.14827 -21.06800 -19.36166 -18.17467 -17.17411 -16.88411 -15.67174 -15.51807 -14.82263 -14.45224 -14.06660 -13.62819 -13.56077 -13.30630 -13.09273 -12.76181 -12.42865 -12.14810 -12.13310 -11.85798 -11.35011 -11.04598 -10.96729 -10.84413 -10.25350 -10.21074 -9.73902 -9.70193 -9.32808 -9.09918 -8.85322 -8.58448 -7.07443 -5.83354 -3.13746 1.43164 3.41767 3.48277 3.48779 3.50622 3.50996 4.40309 4.59613 4.81757 4.86272 5.07701 5.14951 5.22907 5.29674 5.35018 5.47341 5.53841 5.61540 5.65643 5.70407 5.82179 5.86465 6.06021 6.23105 6.38194 6.42252 6.52259 6.57824 6.69681 6.79166 6.86328 7.70870 7.87525 8.34910 8.53214 9.45897 9.99538 10.34939 11.38498 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028515 B = 0.005468 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.688004 B = 5119.143580 C = 5458.118126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 C -0.183 4.183 4 C -0.120 4.120 5 C 0.546 3.454 6 O -0.552 6.552 7 N -0.712 5.712 8 C 0.143 3.857 9 C 0.129 3.871 10 N -0.689 5.689 11 C -0.239 4.239 12 H 0.074 0.926 13 C -0.010 4.010 14 N -0.931 5.931 15 Si 0.907 3.093 16 H -0.278 1.278 17 H -0.291 1.291 18 H -0.291 1.291 19 C -0.186 4.186 20 C -0.188 4.188 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.125 0.875 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.399 0.601 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.387 0.613 32 H 0.255 0.745 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.481 -5.637 7.887 17.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.106 4.106 3 C -0.186 4.186 4 C -0.177 4.177 5 C 0.334 3.666 6 O -0.432 6.432 7 N -0.362 5.362 8 C 0.018 3.982 9 C 0.035 3.965 10 N -0.329 5.329 11 C -0.370 4.370 12 H 0.092 0.908 13 C -0.206 4.206 14 N -0.578 5.578 15 Si 0.738 3.262 16 H -0.203 1.203 17 H -0.218 1.218 18 H -0.218 1.218 19 C -0.227 4.227 20 C -0.226 4.226 21 H 0.084 0.916 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.143 0.857 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.235 0.765 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.222 0.778 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.839 -6.418 7.750 17.111 hybrid contribution 0.583 0.437 -0.677 0.995 sum -13.256 -5.981 7.074 16.172 Atomic orbital electron populations 1.20963 0.92344 1.02762 1.02424 1.23505 0.96022 0.97984 0.93084 1.21514 0.93084 0.96690 1.07336 1.20855 0.99917 0.94237 1.02694 1.18396 0.87573 0.83944 0.76730 1.90763 1.70171 1.31684 1.50603 1.46033 1.08446 1.08316 1.73437 1.21374 0.78276 0.96329 1.02243 1.20178 0.99861 0.91215 0.85239 1.41807 1.28384 1.34908 1.27771 1.19236 1.00785 1.06078 1.10887 0.90826 1.24757 0.99505 0.96653 0.99667 1.69689 1.43397 1.14529 1.30234 0.86111 0.82223 0.78343 0.79501 1.20339 1.21761 1.21814 1.23398 0.95588 1.03377 1.00292 1.23085 0.95605 0.99837 1.04081 0.91623 0.90849 0.90897 0.85742 0.90797 0.91051 0.91552 0.76496 0.92034 0.90099 0.77767 0.93473 0.89961 0.88572 0.88886 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 8.84 36.01 0.32 -0.65 16 2 C -0.09 -0.97 9.84 -36.12 -0.36 -1.32 16 3 C -0.18 -2.32 6.00 -102.85 -0.62 -2.94 16 4 C -0.12 -1.14 9.17 36.01 0.33 -0.81 16 5 C 0.55 9.17 7.74 -12.67 -0.10 9.07 16 6 O -0.55 -11.34 16.24 5.26 0.09 -11.25 16 7 N -0.71 -11.56 5.18 -61.49 -0.32 -11.88 16 8 C 0.14 2.71 5.88 -4.04 -0.02 2.69 16 9 C 0.13 2.52 2.40 -131.82 -0.32 2.20 16 10 N -0.69 -16.84 5.48 -47.24 -0.26 -17.10 16 11 C -0.24 -6.55 9.53 -15.06 -0.14 -6.69 16 12 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 13 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 14 N -0.93 -27.66 13.08 55.49 0.73 -26.94 16 15 Si 0.91 22.44 29.56 -169.99 -5.02 17.41 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 C -0.19 -3.28 10.11 -26.69 -0.27 -3.55 16 20 C -0.19 -2.99 9.37 -26.69 -0.25 -3.24 16 21 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.07 0.47 7.41 -51.93 -0.38 0.09 16 23 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 24 H 0.12 1.55 7.50 -52.48 -0.39 1.16 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.53 6.33 -51.93 -0.33 0.20 16 27 H 0.07 0.60 6.86 -51.93 -0.36 0.24 16 28 H 0.40 5.64 5.93 -40.82 -0.24 5.40 16 29 H 0.06 1.13 7.88 -51.93 -0.41 0.72 16 30 H 0.08 1.80 7.74 -51.93 -0.40 1.40 16 31 H 0.39 10.01 8.06 -40.82 -0.33 9.69 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.08 1.29 8.04 -51.93 -0.42 0.87 16 34 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 35 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.09 1.17 7.82 -51.93 -0.41 0.76 16 LS Contribution 305.60 15.07 4.61 4.61 Total: -1.00 -31.73 305.60 -7.03 -38.76 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -5.33 Total: 11.98 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.52 Total: -5.60 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.15 Total: -55.91 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.73 -7.03 -38.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754512177.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.611 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds