Wall clock time and date at job start Sun Mar 29 2020 22:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 115.55141 * 2 1 4 4 O 1.21276 * 120.00228 * 214.41778 * 3 2 1 5 5 N 1.34773 * 119.99826 * 34.41428 * 3 2 1 6 6 C 1.46495 * 120.00001 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47047 * 173.91120 * 6 5 3 8 8 N 1.46501 * 115.55092 * 324.34007 * 7 6 5 9 9 C 1.36930 * 119.99908 * 294.66932 * 8 7 6 10 10 H 1.07995 * 120.00542 * 353.95946 * 9 8 7 11 11 C 1.38820 * 119.99721 * 173.95080 * 9 8 7 12 12 N 1.31614 * 119.99860 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99726 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47050 * 269.99895 * 13 11 9 15 15 H 1.48498 * 109.47237 * 30.00578 * 13 11 9 16 16 H 1.48502 * 109.46639 * 150.00147 * 13 11 9 17 17 C 1.53002 * 117.49758 * 110.01505 * 7 6 5 18 18 C 1.53009 * 117.49760 * 178.67221 * 7 6 5 19 19 C 1.53002 * 117.50051 * 145.67090 * 2 1 3 20 20 C 1.53009 * 117.49766 * 214.33182 * 2 1 3 21 21 H 1.09007 * 109.47186 * 85.58289 * 1 2 3 22 22 H 1.09000 * 109.47340 * 205.57857 * 1 2 3 23 23 H 1.08998 * 109.47229 * 325.58352 * 1 2 3 24 24 H 0.97008 * 120.00175 * 0.02562 * 5 3 2 25 25 H 1.08997 * 109.46906 * 53.91397 * 6 5 3 26 26 H 1.08997 * 109.47716 * 293.91428 * 6 5 3 27 27 H 0.96995 * 119.99332 * 114.66818 * 8 7 6 28 28 H 0.97003 * 120.00005 * 179.97438 * 12 11 9 29 29 H 1.08995 * 117.49637 * 215.00251 * 17 7 6 30 30 H 1.08996 * 117.49622 * 0.02562 * 17 7 6 31 31 H 1.09004 * 117.49562 * 359.97438 * 18 7 6 32 32 H 1.08999 * 117.49493 * 144.97008 * 18 7 6 33 33 H 1.08994 * 117.50082 * 215.00254 * 19 2 1 34 34 H 1.09005 * 117.49428 * 0.02578 * 19 2 1 35 35 H 1.08989 * 117.49835 * 359.97438 * 20 2 1 36 36 H 1.08998 * 117.49420 * 144.99492 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 3.2232 1.5331 -0.5936 5 7 1.6019 2.3829 0.6597 6 6 2.2340 3.7045 0.6602 7 6 1.3083 4.7123 1.3445 8 7 -0.1248 4.5090 1.1182 9 6 -0.6466 4.6540 -0.1394 10 1 -0.0230 5.0125 -0.9449 11 6 -1.9774 4.3400 -0.3791 12 7 -2.7376 3.9034 0.6026 13 14 -2.6892 4.5371 -2.0949 14 1 -3.2431 5.9065 -2.2467 15 1 -1.6197 4.3211 -3.1023 16 1 -3.7706 3.5401 -2.2996 17 6 1.7383 5.2526 2.7098 18 6 1.8055 6.1535 1.4741 19 6 2.2364 -1.1207 0.7654 20 6 2.2364 -1.1208 -0.7655 21 1 -0.3634 0.0792 -1.0247 22 1 -0.3634 -0.9269 0.4437 23 1 -0.3633 0.8477 0.5808 24 1 0.7676 2.2441 1.1348 25 1 2.4181 4.0195 -0.3669 26 1 3.1796 3.6548 1.2000 27 1 -0.7038 4.2716 1.8593 28 1 -3.6677 3.6843 0.4353 29 1 0.9549 5.4567 3.4397 30 1 2.6808 4.8904 3.1203 31 1 2.7923 6.3835 1.0722 32 1 1.0665 6.9503 1.3905 33 1 3.1713 -0.8747 1.2689 34 1 1.6111 -1.8583 1.2685 35 1 1.6112 -1.8582 -1.2686 36 1 3.1712 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754515479.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:05 Heat of formation + Delta-G solvation = 21.225758 kcal Electronic energy + Delta-G solvation = -17402.859248 eV Core-core repulsion = 14695.869886 eV Total energy + Delta-G solvation = -2706.989362 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.70609 -37.69998 -36.22048 -33.57997 -33.12090 -29.72371 -28.60112 -26.47488 -23.94270 -22.56380 -22.34061 -21.81369 -19.37197 -18.59360 -17.13468 -16.69496 -15.86526 -15.02509 -14.78515 -14.34366 -14.00066 -13.78185 -13.37942 -13.11139 -12.79916 -12.27460 -12.13975 -12.01181 -11.85497 -11.36428 -11.02440 -10.94623 -10.91986 -10.38233 -10.35482 -10.24685 -9.81408 -9.77746 -9.34232 -9.30936 -8.88486 -8.35540 -7.13617 -5.88692 -3.19800 2.94528 3.37546 3.44313 3.46147 3.68332 4.03318 4.40306 4.54241 4.82852 5.01496 5.05904 5.22681 5.27717 5.30339 5.47825 5.56116 5.67349 5.83931 5.91193 5.98980 6.04304 6.09896 6.12085 6.24812 6.25839 6.40278 6.44125 6.53027 6.60854 6.76477 7.08331 7.67902 8.17888 8.29231 8.78551 9.41048 9.92194 10.28764 11.32605 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.017148 B = 0.009545 C = 0.007030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.406535 B = 2932.850109 C = 3981.704792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.158 4.158 3 C 0.546 3.454 4 O -0.563 6.563 5 N -0.693 5.693 6 C 0.152 3.848 7 C 0.128 3.872 8 N -0.688 5.688 9 C -0.234 4.234 10 H 0.070 0.930 11 C -0.007 4.007 12 N -0.930 5.930 13 Si 0.904 3.096 14 H -0.290 1.290 15 H -0.281 1.281 16 H -0.291 1.291 17 C -0.186 4.186 18 C -0.192 4.192 19 C -0.153 4.153 20 C -0.148 4.148 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.410 0.590 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.388 0.612 28 H 0.256 0.744 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.282 -6.263 2.856 10.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.161 4.161 3 C 0.331 3.669 4 O -0.443 6.443 5 N -0.344 5.344 6 C 0.025 3.975 7 C 0.034 3.966 8 N -0.328 5.328 9 C -0.365 4.365 10 H 0.088 0.912 11 C -0.203 4.203 12 N -0.578 5.578 13 Si 0.735 3.265 14 H -0.217 1.217 15 H -0.207 1.207 16 H -0.217 1.217 17 C -0.224 4.224 18 C -0.232 4.232 19 C -0.191 4.191 20 C -0.186 4.186 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.094 0.906 24 H 0.248 0.752 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.223 0.777 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.911 -6.111 2.267 10.250 hybrid contribution -1.162 0.154 -0.503 1.275 sum 6.749 -5.957 1.765 9.173 Atomic orbital electron populations 1.21360 0.89936 1.02810 1.03125 1.21509 0.96263 0.89642 1.08732 1.19387 0.84190 0.85003 0.78283 1.90621 1.24170 1.84395 1.45082 1.45722 1.27315 1.08891 1.52424 1.21061 0.93763 0.81950 1.00716 1.20227 0.86989 0.92838 0.96560 1.41786 0.99599 1.82649 1.08788 1.19133 0.93745 1.36640 0.86958 0.91162 1.24720 0.96663 1.01489 0.97436 1.69648 1.06944 1.50717 1.30491 0.86236 0.78722 0.77369 0.84205 1.21685 1.20652 1.21692 1.23190 1.02129 1.05433 0.91621 1.23367 1.01831 0.96282 1.01745 1.23061 1.01962 0.99052 0.95021 1.22989 1.02636 0.98819 0.94134 0.91676 0.92093 0.90571 0.75180 0.91611 0.92594 0.77708 0.93400 0.89071 0.89410 0.89902 0.88682 0.88654 0.88080 0.88274 0.87730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.79 37.15 0.36 -1.38 16 2 C -0.16 -2.46 2.61 -155.66 -0.41 -2.86 16 3 C 0.55 10.36 7.39 -10.98 -0.08 10.28 16 4 O -0.56 -12.16 16.24 5.56 0.09 -12.07 16 5 N -0.69 -13.10 5.29 -60.30 -0.32 -13.42 16 6 C 0.15 2.86 5.70 -4.04 -0.02 2.83 16 7 C 0.13 2.43 2.45 -131.81 -0.32 2.11 16 8 N -0.69 -15.80 4.49 -47.23 -0.21 -16.01 16 9 C -0.23 -6.08 9.82 -15.06 -0.15 -6.23 16 10 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 11 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 12 N -0.93 -26.03 13.07 55.49 0.73 -25.30 16 13 Si 0.90 21.82 29.55 -169.99 -5.02 16.79 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 C -0.19 -2.98 10.11 -26.69 -0.27 -3.25 16 18 C -0.19 -3.30 10.18 -26.69 -0.27 -3.57 16 19 C -0.15 -1.92 9.88 -26.69 -0.26 -2.19 16 20 C -0.15 -1.99 9.77 -26.68 -0.26 -2.25 16 21 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 22 H 0.06 0.77 7.90 -51.93 -0.41 0.36 16 23 H 0.08 1.30 6.39 -51.93 -0.33 0.97 16 24 H 0.41 7.85 6.10 -40.82 -0.25 7.60 16 25 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 26 H 0.06 0.96 7.91 -51.93 -0.41 0.55 16 27 H 0.39 9.42 8.04 -40.82 -0.33 9.09 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.09 1.22 8.06 -51.93 -0.42 0.81 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.10 1.05 8.05 -51.93 -0.42 0.63 16 35 H 0.10 1.12 8.14 -51.94 -0.42 0.70 16 36 H 0.10 1.51 7.67 -51.93 -0.40 1.11 16 LS Contribution 306.39 15.07 4.62 4.62 Total: -1.00 -28.96 306.39 -7.37 -36.33 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -5.47 Total: 15.85 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -1.78 Total: -6.80 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.19 Total: -54.74 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.96 -7.37 -36.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754515479.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.560 kcal (2) G-P(sol) polarization free energy of solvation -28.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds