Wall clock time and date at job start Sun Mar 29 2020 22:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 115.55141 * 2 1 4 4 O 1.21276 * 120.00228 * 214.41778 * 3 2 1 5 5 N 1.34773 * 119.99826 * 34.41428 * 3 2 1 6 6 C 1.46495 * 120.00001 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47047 * 173.91120 * 6 5 3 8 8 N 1.46501 * 115.55092 * 324.34007 * 7 6 5 9 9 C 1.36930 * 119.99908 * 294.66932 * 8 7 6 10 10 H 1.07995 * 120.00542 * 353.95946 * 9 8 7 11 11 C 1.38820 * 119.99721 * 173.95080 * 9 8 7 12 12 N 1.31614 * 119.99860 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99726 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47050 * 269.99895 * 13 11 9 15 15 H 1.48498 * 109.47237 * 30.00578 * 13 11 9 16 16 H 1.48502 * 109.46639 * 150.00147 * 13 11 9 17 17 C 1.53002 * 117.49758 * 110.01505 * 7 6 5 18 18 C 1.53009 * 117.49760 * 178.67221 * 7 6 5 19 19 C 1.53002 * 117.50051 * 145.67090 * 2 1 3 20 20 C 1.53009 * 117.49766 * 214.33182 * 2 1 3 21 21 H 1.09007 * 109.47186 * 85.58289 * 1 2 3 22 22 H 1.09000 * 109.47340 * 205.57857 * 1 2 3 23 23 H 1.08998 * 109.47229 * 325.58352 * 1 2 3 24 24 H 0.97008 * 120.00175 * 0.02562 * 5 3 2 25 25 H 1.08997 * 109.46906 * 53.91397 * 6 5 3 26 26 H 1.08997 * 109.47716 * 293.91428 * 6 5 3 27 27 H 0.96995 * 119.99332 * 114.66818 * 8 7 6 28 28 H 0.97003 * 120.00005 * 179.97438 * 12 11 9 29 29 H 1.08995 * 117.49637 * 215.00251 * 17 7 6 30 30 H 1.08996 * 117.49622 * 0.02562 * 17 7 6 31 31 H 1.09004 * 117.49562 * 359.97438 * 18 7 6 32 32 H 1.08999 * 117.49493 * 144.97008 * 18 7 6 33 33 H 1.08994 * 117.50082 * 215.00254 * 19 2 1 34 34 H 1.09005 * 117.49428 * 0.02578 * 19 2 1 35 35 H 1.08989 * 117.49835 * 359.97438 * 20 2 1 36 36 H 1.08998 * 117.49420 * 144.99492 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 3.2232 1.5331 -0.5936 5 7 1.6019 2.3829 0.6597 6 6 2.2340 3.7045 0.6602 7 6 1.3083 4.7123 1.3445 8 7 -0.1248 4.5090 1.1182 9 6 -0.6466 4.6540 -0.1394 10 1 -0.0230 5.0125 -0.9449 11 6 -1.9774 4.3400 -0.3791 12 7 -2.7376 3.9034 0.6026 13 14 -2.6892 4.5371 -2.0949 14 1 -3.2431 5.9065 -2.2467 15 1 -1.6197 4.3211 -3.1023 16 1 -3.7706 3.5401 -2.2996 17 6 1.7383 5.2526 2.7098 18 6 1.8055 6.1535 1.4741 19 6 2.2364 -1.1207 0.7654 20 6 2.2364 -1.1208 -0.7655 21 1 -0.3634 0.0792 -1.0247 22 1 -0.3634 -0.9269 0.4437 23 1 -0.3633 0.8477 0.5808 24 1 0.7676 2.2441 1.1348 25 1 2.4181 4.0195 -0.3669 26 1 3.1796 3.6548 1.2000 27 1 -0.7038 4.2716 1.8593 28 1 -3.6677 3.6843 0.4353 29 1 0.9549 5.4567 3.4397 30 1 2.6808 4.8904 3.1203 31 1 2.7923 6.3835 1.0722 32 1 1.0665 6.9503 1.3905 33 1 3.1713 -0.8747 1.2689 34 1 1.6111 -1.8583 1.2685 35 1 1.6112 -1.8582 -1.2686 36 1 3.1712 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754515479.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:05 Heat of formation + Delta-G solvation = 2.963359 kcal Electronic energy + Delta-G solvation = -17403.651165 eV Core-core repulsion = 14695.869886 eV Total energy + Delta-G solvation = -2707.781279 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11353 -39.17109 -37.51646 -35.13985 -34.99314 -31.61817 -29.81752 -27.91564 -25.92724 -23.90552 -23.36474 -23.18229 -20.92050 -20.03338 -19.10185 -18.03195 -17.39971 -16.58026 -16.22583 -16.00044 -15.45729 -15.26364 -14.92265 -14.75280 -14.07308 -13.74753 -13.60868 -13.40348 -13.18235 -12.94618 -12.84848 -12.36251 -12.27878 -12.20486 -11.89269 -11.77397 -11.50161 -11.01648 -10.90408 -10.79502 -10.58948 -9.89256 -9.03650 -7.95118 -5.23950 1.43739 1.46138 1.52764 1.54725 2.28484 2.53010 2.87817 3.03481 3.40198 3.62732 3.68375 3.83326 3.88013 3.94975 4.06917 4.16172 4.40317 4.69113 4.70663 4.80798 4.83199 4.83908 4.86167 4.93788 4.98098 5.02224 5.13867 5.23828 5.30102 5.38714 5.53704 5.61039 6.27270 6.67473 7.29263 7.34560 8.03717 8.30582 9.26145 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.017148 B = 0.009545 C = 0.007030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.406535 B = 2932.850109 C = 3981.704792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.184 4.184 3 C 0.537 3.463 4 O -0.596 6.596 5 N -0.694 5.694 6 C 0.157 3.843 7 C 0.098 3.902 8 N -0.693 5.693 9 C -0.224 4.224 10 H 0.060 0.940 11 C -0.055 4.055 12 N -0.955 5.955 13 Si 0.953 3.047 14 H -0.290 1.290 15 H -0.282 1.282 16 H -0.292 1.292 17 C -0.156 4.156 18 C -0.187 4.187 19 C -0.128 4.128 20 C -0.143 4.143 21 H 0.052 0.948 22 H 0.091 0.909 23 H 0.049 0.951 24 H 0.409 0.591 25 H 0.040 0.960 26 H 0.076 0.924 27 H 0.380 0.620 28 H 0.252 0.748 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.132 0.868 35 H 0.124 0.876 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.059 -7.199 3.570 11.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.187 4.187 3 C 0.325 3.675 4 O -0.479 6.479 5 N -0.344 5.344 6 C 0.030 3.970 7 C 0.005 3.995 8 N -0.332 5.332 9 C -0.356 4.356 10 H 0.078 0.922 11 C -0.249 4.249 12 N -0.605 5.605 13 Si 0.784 3.216 14 H -0.217 1.217 15 H -0.208 1.208 16 H -0.218 1.218 17 C -0.194 4.194 18 C -0.227 4.227 19 C -0.165 4.165 20 C -0.180 4.180 21 H 0.071 0.929 22 H 0.110 0.890 23 H 0.068 0.932 24 H 0.247 0.753 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.213 0.787 28 H 0.061 0.939 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.150 0.850 35 H 0.142 0.858 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.719 -7.030 2.987 11.592 hybrid contribution -1.308 0.485 -0.704 1.562 sum 7.411 -6.545 2.283 10.148 Atomic orbital electron populations 1.21277 0.89748 1.03240 1.02131 1.21490 0.96320 0.88520 1.12372 1.20052 0.83843 0.86255 0.77349 1.90592 1.25720 1.85154 1.46399 1.45797 1.27196 1.09068 1.52351 1.21006 0.94555 0.81934 0.99460 1.20433 0.85006 0.94091 0.99930 1.41742 1.01328 1.82761 1.07377 1.19209 0.93550 1.34937 0.87866 0.92240 1.25243 0.97230 1.02517 0.99884 1.69747 1.06782 1.52322 1.31612 0.85450 0.77848 0.76978 0.81324 1.21749 1.20786 1.21838 1.23273 1.03131 1.02723 0.90226 1.23372 1.02358 0.94453 1.02540 1.23212 1.01626 0.97140 0.94537 1.23086 1.01942 0.97841 0.95152 0.92904 0.89040 0.93168 0.75328 0.94152 0.90645 0.78667 0.93941 0.88961 0.86420 0.87683 0.90144 0.88748 0.84997 0.85783 0.89196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.13 9.79 71.98 0.70 -2.42 16 2 C -0.18 -5.48 2.61 -52.92 -0.14 -5.62 16 3 C 0.54 20.36 7.39 87.66 0.65 21.01 16 4 O -0.60 -25.93 16.24 -3.02 -0.05 -25.98 16 5 N -0.69 -26.31 5.29 -463.08 -2.45 -28.75 16 6 C 0.16 5.84 5.70 86.38 0.49 6.34 16 7 C 0.10 3.64 2.45 3.61 0.01 3.65 16 8 N -0.69 -31.96 4.49 -303.33 -1.36 -33.33 16 9 C -0.22 -11.77 9.82 84.04 0.83 -10.94 16 10 H 0.06 3.21 7.83 -2.91 -0.02 3.19 16 11 C -0.06 -3.00 5.50 84.86 0.47 -2.54 16 12 N -0.95 -54.04 13.07 21.65 0.28 -53.75 16 13 Si 0.95 45.33 29.55 68.60 2.03 47.36 16 14 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 15 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 16 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 17 C -0.16 -4.61 10.11 30.62 0.31 -4.30 16 18 C -0.19 -6.12 10.18 30.62 0.31 -5.81 16 19 C -0.13 -2.84 9.88 30.62 0.30 -2.54 16 20 C -0.14 -3.54 9.77 30.62 0.30 -3.24 16 21 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 22 H 0.09 2.07 7.90 -2.39 -0.02 2.05 16 23 H 0.05 1.72 6.39 -2.39 -0.02 1.71 16 24 H 0.41 15.79 6.10 -92.70 -0.57 15.22 16 25 H 0.04 1.69 8.12 -2.39 -0.02 1.67 16 26 H 0.08 2.49 7.91 -2.39 -0.02 2.47 16 27 H 0.38 18.60 8.04 -92.71 -0.75 17.86 16 28 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 29 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.12 2.81 8.06 -2.39 -0.02 2.80 16 31 H 0.10 2.96 8.14 -2.38 -0.02 2.94 16 32 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.13 2.14 8.05 -2.38 -0.02 2.12 16 35 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.09 2.51 7.67 -2.39 -0.02 2.49 16 Total: -1.00 -62.58 306.39 2.45 -60.13 By element: Atomic # 1 Polarization: 40.97 SS G_CDS: -0.23 Total: 40.74 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 4.23 Total: -6.41 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -3.53 Total: -115.83 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.05 Total: -25.98 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -62.58 2.45 -60.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754515479.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.094 kcal (2) G-P(sol) polarization free energy of solvation -62.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds