Wall clock time and date at job start Sun Mar 29 2020 22:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47462 * 2 1 4 4 O 1.21281 * 119.99729 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00054 * 180.02562 * 3 2 1 6 6 C 1.46503 * 119.99652 * 179.72959 * 5 3 2 7 7 C 1.53006 * 109.46677 * 180.27516 * 6 5 3 8 8 H 1.08992 * 115.51872 * 330.57944 * 7 6 5 9 9 C 1.52999 * 117.43768 * 185.16587 * 7 6 5 10 10 H 1.09001 * 119.54278 * 4.11519 * 9 7 6 11 11 C 1.54387 * 118.12131 * 160.81187 * 9 7 6 12 12 N 1.48009 * 104.65087 * 87.21258 * 11 9 7 13 13 C 1.36939 * 127.83808 * 140.40192 * 12 11 9 14 14 H 1.08006 * 119.99512 * 195.62281 * 13 12 11 15 15 C 1.38814 * 120.00242 * 15.63116 * 13 12 11 16 16 N 1.31618 * 120.00011 * 8.99581 * 15 13 12 17 17 Si 1.86799 * 119.99840 * 189.00374 * 15 13 12 18 18 H 1.48501 * 109.47401 * 94.44377 * 17 15 13 19 19 H 1.48503 * 109.46752 * 214.44531 * 17 15 13 20 20 H 1.48503 * 109.47414 * 334.44093 * 17 15 13 21 21 C 1.48138 * 104.32226 * 320.46071 * 12 11 9 22 22 C 1.52998 * 117.44063 * 115.99880 * 7 6 5 23 23 H 1.09006 * 119.54224 * 355.87700 * 22 7 6 24 24 H 1.09000 * 109.46519 * 299.99640 * 1 2 3 25 25 H 1.08998 * 109.47398 * 59.99183 * 1 2 3 26 26 H 1.08992 * 109.47386 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47035 * 240.00464 * 2 1 3 28 28 H 1.08998 * 109.47398 * 120.00817 * 2 1 3 29 29 H 0.96993 * 120.00041 * 0.02562 * 5 3 2 30 30 H 1.09007 * 109.46805 * 300.27387 * 6 5 3 31 31 H 1.08994 * 109.47181 * 60.27603 * 6 5 3 32 32 H 1.09002 * 110.41046 * 205.97255 * 11 9 7 33 33 H 1.09001 * 110.40482 * 328.40307 * 11 9 7 34 34 H 0.96994 * 119.99750 * 180.02562 * 16 15 13 35 35 H 1.08997 * 110.40802 * 280.74667 * 21 12 11 36 36 H 1.09001 * 110.41020 * 158.31887 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8458 3.0483 -0.0065 7 6 5.3759 3.0481 -0.0128 8 1 5.8473 2.1927 0.4709 9 6 6.0814 4.4008 0.1027 10 1 5.4903 5.3043 0.2525 11 6 7.5599 4.4147 0.5471 12 7 8.3292 4.2506 -0.7066 13 6 9.4948 4.8739 -1.0647 14 1 9.8195 4.8613 -2.0947 15 6 10.2590 5.5218 -0.1039 16 7 9.9626 5.3898 1.1717 17 14 11.7078 6.5813 -0.6214 18 1 11.2711 7.9961 -0.7348 19 1 12.7859 6.4759 0.3944 20 1 12.2184 6.1141 -1.9353 21 6 7.5516 3.2600 -1.4867 22 6 6.0760 3.6398 -1.2378 23 1 5.4807 3.9762 -2.0867 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.9878 0.9298 -0.0013 30 1 3.4788 3.5595 -0.8966 31 1 3.4862 3.5646 0.8834 32 1 7.8054 5.3651 1.0212 33 1 7.7601 3.5868 1.2272 34 1 10.4964 5.8428 1.8429 35 1 7.7505 2.2510 -1.1256 36 1 7.7907 3.3391 -2.5472 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755428955.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:58 Heat of formation + Delta-G solvation = 9.238152 kcal Electronic energy + Delta-G solvation = -16536.724256 eV Core-core repulsion = 13829.215072 eV Total energy + Delta-G solvation = -2707.509183 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.80821 -38.73592 -34.99929 -33.37125 -32.86878 -30.82906 -27.60135 -27.13125 -25.25523 -23.65951 -21.14157 -20.62953 -19.66027 -19.25384 -17.18478 -16.80253 -15.97787 -15.83785 -14.82738 -14.38724 -14.24561 -13.80639 -13.51360 -12.96373 -12.74008 -12.61215 -12.45706 -11.93750 -11.84762 -11.36238 -11.26811 -11.10669 -10.85627 -10.65637 -10.31612 -10.13369 -9.97088 -9.75506 -9.40335 -9.13601 -8.93380 -8.65021 -6.88499 -5.81420 -3.15954 2.60943 3.15708 3.37290 3.42631 3.44628 4.13278 4.44998 4.62854 4.87688 4.89437 4.91760 5.28328 5.34328 5.39169 5.44633 5.51004 5.58185 5.72640 5.79759 5.89515 5.92063 5.96925 6.01414 6.21763 6.38234 6.55440 6.65063 6.70016 6.90608 7.34344 7.48560 7.51812 7.70413 8.19592 8.19967 9.09676 9.72258 10.49277 11.32884 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.082145 B = 0.003932 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.779356 B = 7119.629326 C = 7204.424297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.507 3.493 4 O -0.547 6.547 5 N -0.726 5.726 6 C 0.153 3.847 7 C -0.150 4.150 8 H 0.103 0.897 9 C -0.162 4.162 10 H 0.103 0.897 11 C 0.184 3.816 12 N -0.595 5.595 13 C -0.228 4.228 14 H 0.077 0.923 15 C -0.006 4.006 16 N -0.916 5.916 17 Si 0.913 3.087 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.154 3.846 22 C -0.172 4.172 23 H 0.102 0.898 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.402 0.598 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.023 0.977 34 H 0.254 0.746 35 H 0.024 0.976 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.292 -10.179 -1.755 16.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.185 4.185 3 C 0.294 3.706 4 O -0.424 6.424 5 N -0.377 5.377 6 C 0.030 3.970 7 C -0.169 4.169 8 H 0.121 0.879 9 C -0.183 4.183 10 H 0.121 0.879 11 C 0.058 3.942 12 N -0.318 5.318 13 C -0.356 4.356 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.562 5.562 17 Si 0.743 3.257 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.205 1.205 21 C 0.028 3.972 22 C -0.192 4.192 23 H 0.120 0.880 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.236 0.764 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.041 0.959 34 H 0.064 0.936 35 H 0.042 0.958 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.596 -9.353 -1.674 16.587 hybrid contribution 1.085 0.220 -0.215 1.128 sum -12.511 -9.133 -1.888 15.604 Atomic orbital electron populations 1.21519 0.93151 1.01412 1.03347 1.21634 0.98590 0.93945 1.04325 1.20791 0.82164 0.91829 0.75860 1.90697 1.55399 1.46671 1.49679 1.46102 1.07059 1.09380 1.75201 1.20865 0.91854 0.82273 1.01999 1.22531 0.92072 0.99107 1.03183 0.87942 1.24223 0.99866 0.93063 1.01110 0.87903 1.21043 0.82789 1.01789 0.88579 1.45177 1.24323 1.45654 1.16642 1.19025 0.96201 1.27217 0.93168 0.90541 1.24903 0.98629 1.01602 0.95149 1.69897 1.41353 1.45915 0.99016 0.86085 0.81698 0.80391 0.77480 1.21504 1.21654 1.20490 1.21139 0.87584 0.92516 0.95996 1.23977 0.98402 1.05396 0.91397 0.87957 0.92019 0.92038 0.92196 0.88957 0.88955 0.76389 0.91548 0.91224 0.89170 0.95893 0.93550 0.95845 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.20 37.16 0.34 -0.80 16 2 C -0.14 -1.16 6.42 -27.88 -0.18 -1.34 16 3 C 0.51 6.20 7.83 -10.98 -0.09 6.11 16 4 O -0.55 -8.98 15.98 5.56 0.09 -8.89 16 5 N -0.73 -8.28 5.56 -60.29 -0.33 -8.62 16 6 C 0.15 2.10 5.95 -4.04 -0.02 2.08 16 7 C -0.15 -2.29 5.40 -90.62 -0.49 -2.77 16 8 H 0.10 1.54 8.04 -51.93 -0.42 1.12 16 9 C -0.16 -3.06 6.85 -89.29 -0.61 -3.67 16 10 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 11 C 0.18 4.39 5.69 -2.49 -0.01 4.38 16 12 N -0.59 -15.21 3.38 -168.98 -0.57 -15.78 16 13 C -0.23 -6.35 10.35 -15.06 -0.16 -6.51 16 14 H 0.08 2.06 7.85 -52.48 -0.41 1.65 16 15 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 16 N -0.92 -26.74 10.86 55.49 0.60 -26.14 16 17 Si 0.91 21.89 29.56 -169.99 -5.03 16.86 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.15 3.19 7.04 -2.41 -0.02 3.17 16 22 C -0.17 -3.02 6.74 -89.29 -0.60 -3.62 16 23 H 0.10 1.67 8.12 -51.93 -0.42 1.25 16 24 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 25 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.40 3.56 8.40 -40.82 -0.34 3.22 16 30 H 0.07 0.96 7.94 -51.92 -0.41 0.55 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.09 2.42 6.51 -51.93 -0.34 2.08 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 300.02 15.07 4.52 4.52 Total: -1.00 -32.05 300.02 -8.35 -40.40 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.70 Total: 0.87 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.93 Total: -3.23 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.30 Total: -50.53 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.05 -8.35 -40.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755428955.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.643 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds