Wall clock time and date at job start Sun Mar 29 2020 22:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47462 * 2 1 4 4 O 1.21281 * 119.99729 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00054 * 180.02562 * 3 2 1 6 6 C 1.46503 * 119.99652 * 179.72959 * 5 3 2 7 7 C 1.53006 * 109.46677 * 180.27516 * 6 5 3 8 8 H 1.08992 * 115.51872 * 330.57944 * 7 6 5 9 9 C 1.52999 * 117.43768 * 185.16587 * 7 6 5 10 10 H 1.09001 * 119.54278 * 4.11519 * 9 7 6 11 11 C 1.54387 * 118.12131 * 160.81187 * 9 7 6 12 12 N 1.48009 * 104.65087 * 87.21258 * 11 9 7 13 13 C 1.36939 * 127.83808 * 140.40192 * 12 11 9 14 14 H 1.08006 * 119.99512 * 195.62281 * 13 12 11 15 15 C 1.38814 * 120.00242 * 15.63116 * 13 12 11 16 16 N 1.31618 * 120.00011 * 8.99581 * 15 13 12 17 17 Si 1.86799 * 119.99840 * 189.00374 * 15 13 12 18 18 H 1.48501 * 109.47401 * 94.44377 * 17 15 13 19 19 H 1.48503 * 109.46752 * 214.44531 * 17 15 13 20 20 H 1.48503 * 109.47414 * 334.44093 * 17 15 13 21 21 C 1.48138 * 104.32226 * 320.46071 * 12 11 9 22 22 C 1.52998 * 117.44063 * 115.99880 * 7 6 5 23 23 H 1.09006 * 119.54224 * 355.87700 * 22 7 6 24 24 H 1.09000 * 109.46519 * 299.99640 * 1 2 3 25 25 H 1.08998 * 109.47398 * 59.99183 * 1 2 3 26 26 H 1.08992 * 109.47386 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47035 * 240.00464 * 2 1 3 28 28 H 1.08998 * 109.47398 * 120.00817 * 2 1 3 29 29 H 0.96993 * 120.00041 * 0.02562 * 5 3 2 30 30 H 1.09007 * 109.46805 * 300.27387 * 6 5 3 31 31 H 1.08994 * 109.47181 * 60.27603 * 6 5 3 32 32 H 1.09002 * 110.41046 * 205.97255 * 11 9 7 33 33 H 1.09001 * 110.40482 * 328.40307 * 11 9 7 34 34 H 0.96994 * 119.99750 * 180.02562 * 16 15 13 35 35 H 1.08997 * 110.40802 * 280.74667 * 21 12 11 36 36 H 1.09001 * 110.41020 * 158.31887 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8458 3.0483 -0.0065 7 6 5.3759 3.0481 -0.0128 8 1 5.8473 2.1927 0.4709 9 6 6.0814 4.4008 0.1027 10 1 5.4903 5.3043 0.2525 11 6 7.5599 4.4147 0.5471 12 7 8.3292 4.2506 -0.7066 13 6 9.4948 4.8739 -1.0647 14 1 9.8195 4.8613 -2.0947 15 6 10.2590 5.5218 -0.1039 16 7 9.9626 5.3898 1.1717 17 14 11.7078 6.5813 -0.6214 18 1 11.2711 7.9961 -0.7348 19 1 12.7859 6.4759 0.3944 20 1 12.2184 6.1141 -1.9353 21 6 7.5516 3.2600 -1.4867 22 6 6.0760 3.6398 -1.2378 23 1 5.4807 3.9762 -2.0867 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.9878 0.9298 -0.0013 30 1 3.4788 3.5595 -0.8966 31 1 3.4862 3.5646 0.8834 32 1 7.8054 5.3651 1.0212 33 1 7.7601 3.5868 1.2272 34 1 10.4964 5.8428 1.8429 35 1 7.7505 2.2510 -1.1256 36 1 7.7907 3.3391 -2.5472 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755428955.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:57 Heat of formation + Delta-G solvation = -12.062170 kcal Electronic energy + Delta-G solvation = -16537.647907 eV Core-core repulsion = 13829.215072 eV Total energy + Delta-G solvation = -2708.432835 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.92548 -40.17126 -36.36127 -34.97103 -33.66234 -32.64421 -29.07461 -28.83139 -26.87935 -24.64087 -22.79954 -21.86174 -20.92139 -20.76222 -18.85178 -18.07318 -17.15150 -16.74312 -16.65364 -15.95826 -15.43993 -15.04859 -14.83058 -14.62293 -14.35363 -13.81757 -13.39122 -13.20005 -13.08165 -12.88257 -12.74093 -12.60094 -12.29701 -11.98962 -11.97938 -11.93370 -11.77772 -11.08992 -10.87340 -10.70118 -10.53276 -10.01965 -8.91713 -7.92734 -5.29217 1.45935 1.47761 1.56912 1.69173 2.19850 2.46924 2.73958 3.25529 3.62334 3.70214 3.82733 3.87895 4.17235 4.26709 4.29569 4.32129 4.41895 4.55214 4.63551 4.71438 4.83265 4.93428 5.01685 5.03558 5.10804 5.21342 5.33498 5.37160 5.44167 5.51709 5.52371 5.65482 6.17440 6.61108 7.00484 7.30511 7.67594 8.45739 9.21012 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.082145 B = 0.003932 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.779356 B = 7119.629326 C = 7204.424297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 C 0.502 3.498 4 O -0.595 6.595 5 N -0.717 5.717 6 C 0.162 3.838 7 C -0.107 4.107 8 H 0.112 0.888 9 C -0.179 4.179 10 H 0.111 0.889 11 C 0.189 3.811 12 N -0.621 5.621 13 C -0.243 4.243 14 H 0.081 0.919 15 C -0.063 4.063 16 N -0.947 5.947 17 Si 0.980 3.020 18 H -0.287 1.287 19 H -0.293 1.293 20 H -0.266 1.266 21 C 0.149 3.851 22 C -0.161 4.161 23 H 0.122 0.878 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.417 0.583 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.003 0.997 34 H 0.250 0.750 35 H 0.030 0.970 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.079 -11.775 -2.792 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.291 3.709 4 O -0.476 6.476 5 N -0.369 5.369 6 C 0.037 3.963 7 C -0.126 4.126 8 H 0.130 0.870 9 C -0.200 4.200 10 H 0.129 0.871 11 C 0.064 3.936 12 N -0.345 5.345 13 C -0.371 4.371 14 H 0.099 0.901 15 C -0.257 4.257 16 N -0.595 5.595 17 Si 0.808 3.192 18 H -0.214 1.214 19 H -0.220 1.220 20 H -0.190 1.190 21 C 0.024 3.976 22 C -0.180 4.180 23 H 0.140 0.860 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.105 0.895 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.254 0.746 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.021 0.979 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.385 -10.997 -2.735 18.313 hybrid contribution 1.304 0.661 0.102 1.466 sum -13.081 -10.337 -2.633 16.878 Atomic orbital electron populations 1.21541 0.93656 1.02607 1.01767 1.21699 0.98032 0.91124 1.06763 1.21599 0.81701 0.93182 0.74442 1.90683 1.56526 1.48503 1.51871 1.45996 1.07429 1.08820 1.74703 1.20626 0.90206 0.83775 1.01654 1.22417 0.92884 0.96909 1.00398 0.87037 1.23914 0.97576 0.95766 1.02720 0.87141 1.20767 0.85955 0.98908 0.87985 1.45501 1.24456 1.46950 1.17640 1.19413 0.97071 1.27156 0.93478 0.90131 1.25748 1.01550 1.03157 0.95198 1.70091 1.42467 1.46991 0.99949 0.85040 0.78305 0.78397 0.77441 1.21415 1.21972 1.19025 1.21299 0.88837 0.91706 0.95787 1.23908 0.97082 1.05114 0.91913 0.85984 0.93677 0.93640 0.89538 0.86326 0.86391 0.74576 0.91880 0.91794 0.93000 0.97882 0.94111 0.95224 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.20 71.98 0.66 -1.35 16 2 C -0.14 -1.72 6.42 29.85 0.19 -1.53 16 3 C 0.50 11.10 7.83 87.66 0.69 11.79 16 4 O -0.59 -18.97 15.98 -3.03 -0.05 -19.02 16 5 N -0.72 -14.24 5.56 -463.04 -2.57 -16.82 16 6 C 0.16 4.04 5.95 86.38 0.51 4.56 16 7 C -0.11 -3.02 5.40 -10.79 -0.06 -3.08 16 8 H 0.11 3.03 8.04 -2.39 -0.02 3.01 16 9 C -0.18 -6.66 6.85 -9.94 -0.07 -6.73 16 10 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 11 C 0.19 9.29 5.69 86.56 0.49 9.78 16 12 N -0.62 -32.08 3.38 -688.52 -2.32 -34.40 16 13 C -0.24 -13.64 10.35 84.03 0.87 -12.77 16 14 H 0.08 4.33 7.85 -2.91 -0.02 4.31 16 15 C -0.06 -3.58 5.40 84.86 0.46 -3.12 16 16 N -0.95 -57.03 10.86 21.65 0.24 -56.79 16 17 Si 0.98 45.52 29.56 68.60 2.03 47.54 16 18 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 19 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 21 C 0.15 5.99 7.04 86.54 0.61 6.60 16 22 C -0.16 -5.30 6.74 -9.94 -0.07 -5.37 16 23 H 0.12 3.62 8.12 -2.38 -0.02 3.60 16 24 H 0.04 0.80 8.10 -2.39 -0.02 0.78 16 25 H 0.04 0.80 8.10 -2.39 -0.02 0.78 16 26 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.42 5.80 8.40 -92.71 -0.78 5.02 16 30 H 0.06 1.68 7.94 -2.38 -0.02 1.66 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 2.91 6.51 -2.39 -0.02 2.90 16 33 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -71.38 300.02 1.89 -69.49 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.28 Total: 11.21 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 4.29 Total: -1.21 kcal Atomic # 7 Polarization: -103.35 SS G_CDS: -4.66 Total: -108.01 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.05 Total: -19.02 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -71.38 1.89 -69.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755428955.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.425 kcal (2) G-P(sol) polarization free energy of solvation -71.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds