Wall clock time and date at job start Sun Mar 29 2020 23:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47131 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.47127 * 179.97438 * 13 12 11 15 15 H 1.08996 * 109.48500 * 54.97159 * 14 13 12 16 16 C 1.52958 * 109.48364 * 174.99976 * 14 13 12 17 17 C 1.52957 * 109.81924 * 183.57327 * 16 14 13 18 18 C 1.53230 * 109.40393 * 296.40429 * 17 16 14 19 19 C 1.51263 * 108.53781 * 54.62431 * 18 17 16 20 20 O 1.20765 * 120.84843 * 128.67498 * 19 18 17 21 21 C 1.51264 * 118.30205 * 308.65349 * 19 18 17 22 22 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 24 24 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 25 25 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 26 26 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 27 27 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 28 28 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 29 29 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 30 30 H 1.09004 * 109.47298 * 59.99717 * 12 11 10 31 31 H 1.08998 * 109.47076 * 299.99221 * 13 12 11 32 32 H 1.09001 * 109.47502 * 60.00153 * 13 12 11 33 33 H 1.08999 * 109.41277 * 303.68738 * 16 14 13 34 34 H 1.09005 * 109.41085 * 63.53842 * 16 14 13 35 35 H 1.09004 * 109.47726 * 56.37876 * 17 16 14 36 36 H 1.09000 * 109.48062 * 176.41934 * 17 16 14 37 37 H 1.09000 * 109.61960 * 174.33991 * 18 17 16 38 38 H 1.08994 * 109.62307 * 294.90659 * 18 17 16 39 39 H 1.09007 * 109.62209 * 291.63113 * 21 19 18 40 40 H 1.09006 * 109.62576 * 171.06711 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 2.4747 -6.1499 0.0018 13 6 1.7098 -7.4750 0.0018 14 6 2.7041 -8.6379 0.0018 15 1 3.3886 -8.5310 0.8432 16 6 1.9438 -9.9592 0.1275 17 6 2.9345 -11.1211 0.2177 18 6 3.7381 -11.2071 -1.0841 19 6 4.3777 -9.8613 -1.3444 20 8 5.5596 -9.7717 -1.5755 21 6 3.4990 -8.6306 -1.3082 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6242 -2.5567 0.8904 24 1 0.6248 -2.5571 -0.8896 25 1 2.8720 -3.6043 -0.8895 26 1 2.8721 -3.6042 0.8905 27 1 0.8542 -5.0446 0.8914 28 1 0.8534 -5.0451 -0.8886 29 1 3.1014 -6.0927 -0.8882 30 1 3.1014 -6.0917 0.8918 31 1 1.0829 -7.5326 0.8916 32 1 1.0834 -7.5330 -0.8884 33 1 1.3271 -9.9382 1.0260 34 1 1.3064 -10.0949 -0.7463 35 1 3.6138 -10.9554 1.0539 36 1 2.3895 -12.0525 0.3709 37 1 4.5125 -11.9679 -0.9866 38 1 3.0726 -11.4618 -1.9089 39 1 2.8113 -8.6468 -2.1538 40 1 4.1199 -7.7359 -1.3548 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002514095.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:00 Heat of formation + Delta-G solvation = -102.027605 kcal Electronic energy + Delta-G solvation = -16467.112584 eV Core-core repulsion = 13858.318899 eV Total energy + Delta-G solvation = -2608.793685 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.167 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.21485 -37.55745 -35.54748 -33.70119 -32.11204 -29.68172 -29.12835 -26.34135 -23.96967 -22.64652 -21.37696 -20.59971 -20.11493 -19.48087 -16.62203 -16.16485 -16.04173 -15.24899 -14.90162 -14.74765 -14.32852 -13.70339 -13.49405 -13.21827 -13.11648 -12.86290 -12.46587 -12.32874 -11.90964 -11.73122 -11.36178 -11.28831 -10.97922 -10.91944 -10.73934 -10.69563 -10.37209 -10.28622 -10.08692 -9.73285 -9.66758 -9.44989 -8.44838 -8.27833 -6.31588 -3.99797 1.70613 3.46403 3.48699 3.67327 3.82726 4.33377 4.36837 4.49527 4.58674 4.63336 4.84000 5.05673 5.07275 5.17871 5.21896 5.33599 5.37283 5.45672 5.48182 5.55694 5.62529 5.71789 5.80207 5.83607 5.90948 5.94538 6.05692 6.17440 6.29715 6.41553 6.50377 6.75268 6.87016 7.06689 7.24736 7.48746 7.62434 8.29211 8.52070 8.94339 9.72640 11.09178 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.049772 B = 0.003319 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.432780 B = 8435.407717 C = 8849.336614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.012 3.988 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.602 4.602 8 H 0.047 0.953 9 C 0.007 3.993 10 C -0.105 4.105 11 C -0.119 4.119 12 C -0.122 4.122 13 C -0.113 4.113 14 C -0.081 4.081 15 H 0.074 0.926 16 C -0.122 4.122 17 C -0.114 4.114 18 C -0.171 4.171 19 C 0.361 3.639 20 O -0.461 6.461 21 C -0.168 4.168 22 H 0.268 0.732 23 H 0.005 0.995 24 H 0.005 0.995 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.421 -23.299 -0.546 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.191 4.191 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.640 4.640 8 H 0.066 0.934 9 C -0.030 4.030 10 C -0.142 4.142 11 C -0.157 4.157 12 C -0.159 4.159 13 C -0.151 4.151 14 C -0.100 4.100 15 H 0.093 0.907 16 C -0.159 4.159 17 C -0.151 4.151 18 C -0.209 4.209 19 C 0.236 3.764 20 O -0.335 6.335 21 C -0.205 4.205 22 H 0.078 0.922 23 H 0.023 0.977 24 H 0.023 0.977 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.858 -21.602 -0.666 21.954 hybrid contribution 0.119 -1.690 -0.027 1.695 sum 3.977 -23.292 -0.693 23.640 Atomic orbital electron populations 1.70779 1.06883 1.30539 1.47004 1.25865 0.96592 1.02755 0.93887 0.83554 0.74886 0.75370 0.76501 1.20779 1.21469 1.21468 1.22113 0.94284 0.92252 1.55339 0.93439 1.19235 0.94727 0.93346 0.95721 1.21503 0.98752 0.93676 1.00289 1.21663 0.97932 0.94858 1.01225 1.21692 0.98551 0.93823 1.01853 1.21677 0.97482 0.93562 1.02373 1.21186 0.97147 0.95282 0.96388 0.90715 1.21681 0.97859 0.93491 1.02902 1.21516 0.97991 0.99425 0.96197 1.22327 1.01580 0.96736 1.00227 1.24977 0.88593 0.92757 0.70023 1.90417 1.18248 1.89207 1.35590 1.22455 1.00151 0.97818 1.00098 0.92157 0.97677 0.97680 0.93442 0.93453 0.92734 0.92726 0.92121 0.92280 0.91580 0.91766 0.90975 0.91272 0.91484 0.90769 0.89614 0.88430 0.88286 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.84 13.65 55.43 0.76 -28.08 16 2 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 3 Si 1.07 25.96 29.90 -169.99 -5.08 20.87 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.60 -17.83 9.11 -34.44 -0.31 -18.14 16 8 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 9 C 0.01 0.18 4.28 -27.88 -0.12 0.06 16 10 C -0.10 -2.22 5.15 -26.73 -0.14 -2.36 16 11 C -0.12 -1.99 5.21 -26.73 -0.14 -2.13 16 12 C -0.12 -1.60 4.98 -26.73 -0.13 -1.73 16 13 C -0.11 -1.14 4.68 -26.73 -0.13 -1.27 16 14 C -0.08 -0.70 2.20 -90.52 -0.20 -0.89 16 15 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 16 C -0.12 -0.80 5.09 -26.77 -0.14 -0.94 16 17 C -0.11 -0.68 5.94 -26.63 -0.16 -0.84 16 18 C -0.17 -1.18 6.17 -27.49 -0.17 -1.35 16 19 C 0.36 3.64 6.72 -28.48 -0.19 3.45 16 20 O -0.46 -6.52 17.89 5.99 0.11 -6.41 16 21 C -0.17 -1.54 5.06 -27.49 -0.14 -1.68 16 22 H 0.27 8.40 7.22 -40.82 -0.29 8.10 16 23 H 0.00 0.14 8.01 -51.93 -0.42 -0.28 16 24 H 0.00 0.14 8.01 -51.93 -0.42 -0.28 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.79 6.70 -51.93 -0.35 0.44 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 40 H 0.09 0.99 6.86 -51.93 -0.36 0.63 16 LS Contribution 319.49 15.07 4.81 4.81 Total: -1.00 -33.14 319.49 -8.84 -41.97 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -7.37 Total: -5.62 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: -2.06 Total: -27.56 kcal Atomic # 7 Polarization: -28.84 SS G_CDS: 0.76 Total: -28.08 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: 0.11 Total: -6.41 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.08 Total: 20.87 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.14 -8.84 -41.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002514095.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.053 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds