Wall clock time and date at job start Sun Mar 29 2020 23:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47081 * 2 1 4 4 N 1.46506 * 109.46881 * 184.96155 * 3 2 1 5 5 N 1.40447 * 126.82019 * 84.93905 * 4 3 2 6 6 C 1.30710 * 106.78972 * 180.02562 * 5 4 3 7 7 N 1.33238 * 108.94896 * 0.24091 * 6 5 4 8 8 C 1.30830 * 109.82686 * 359.59429 * 7 6 5 9 9 C 1.50700 * 125.96028 * 180.12532 * 8 7 6 10 10 N 1.46897 * 109.47584 * 95.47189 * 9 8 7 11 11 C 1.46900 * 110.99867 * 288.26517 * 10 9 8 12 12 C 1.46895 * 111.00384 * 164.30870 * 10 9 8 13 13 C 1.50704 * 109.47498 * 189.99866 * 12 10 9 14 14 H 1.08002 * 119.99342 * 0.02562 * 13 12 10 15 15 C 1.37874 * 120.00021 * 180.02562 * 13 12 10 16 16 N 1.31512 * 120.00242 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99672 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47273 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47023 * 120.00180 * 17 15 13 20 20 H 1.48497 * 109.47134 * 239.99986 * 17 15 13 21 21 H 1.08996 * 109.47424 * 300.00458 * 1 2 3 22 22 H 1.09000 * 109.46881 * 60.00084 * 1 2 3 23 23 H 1.08994 * 109.47344 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47067 * 239.99762 * 2 1 3 25 25 H 1.09001 * 109.46371 * 119.99785 * 2 1 3 26 26 H 1.08998 * 109.47276 * 64.96641 * 3 2 1 27 27 H 1.08999 * 109.47595 * 304.95782 * 3 2 1 28 28 H 1.08006 * 125.52781 * 179.97438 * 6 5 4 29 29 H 1.09008 * 109.47066 * 215.47260 * 9 8 7 30 30 H 1.09002 * 109.47280 * 335.46933 * 9 8 7 31 31 H 1.09005 * 109.46931 * 64.91255 * 11 10 9 32 32 H 1.09001 * 109.47335 * 184.90701 * 11 10 9 33 33 H 1.09000 * 109.47430 * 304.91138 * 11 10 9 34 34 H 1.09002 * 109.47276 * 310.00357 * 12 10 9 35 35 H 1.09003 * 109.46685 * 70.00057 * 12 10 9 36 36 H 0.97004 * 119.99979 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5002 1.4441 -0.1195 5 7 4.2477 1.3782 -1.3067 6 6 5.5080 1.4057 -0.9614 7 7 5.5913 1.4792 0.3664 8 6 4.3907 1.5084 0.8854 9 6 4.0633 1.5926 2.3540 10 7 3.8273 2.9946 2.7236 11 6 5.0827 3.7574 2.7240 12 6 3.1531 3.0896 4.0252 13 6 2.7091 4.5107 4.2585 14 1 2.9075 5.2675 3.5140 15 6 2.0495 4.8446 5.4223 16 7 1.8075 3.9229 6.3287 17 14 1.4985 6.6061 5.7111 18 1 1.8869 7.4432 4.5477 19 1 0.0232 6.6424 5.8760 20 1 2.1470 7.1326 6.9389 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.7512 1.9299 0.9311 27 1 1.6060 1.9813 -0.8422 28 1 6.3461 1.3698 -1.6417 29 1 3.1677 1.0066 2.5608 30 1 4.8972 1.1990 2.9353 31 1 5.4812 3.8018 1.7104 32 1 4.8934 4.7684 3.0846 33 1 5.8051 3.2679 3.3773 34 1 2.2842 2.4314 4.0333 35 1 3.8429 2.7903 4.8144 36 1 1.3438 4.1580 7.1477 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088593013.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:47 Heat of formation + Delta-G solvation = 64.905818 kcal Electronic energy + Delta-G solvation = -17121.247853 eV Core-core repulsion = 14448.445352 eV Total energy + Delta-G solvation = -2672.802501 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.149 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.08300 -38.36952 -36.66520 -34.76472 -32.94953 -32.63054 -29.48874 -28.57639 -27.44305 -25.82649 -23.39532 -22.72733 -22.34452 -21.06349 -18.56492 -17.90837 -17.14093 -16.55958 -16.34643 -15.97175 -15.68138 -15.56047 -15.18416 -14.29994 -14.27650 -13.89166 -13.55326 -13.37898 -13.14476 -12.96260 -12.69811 -12.60208 -12.53182 -12.39722 -12.30234 -11.93660 -11.74248 -11.34093 -11.00565 -10.70113 -10.61127 -10.50056 -9.19355 -8.19715 -6.28345 0.59414 1.37465 1.42366 1.44358 1.56422 1.94384 2.41961 3.04365 3.14224 3.45570 3.56875 3.80274 3.87454 4.01500 4.26062 4.37553 4.39964 4.52714 4.57066 4.61458 4.72733 4.82976 5.05814 5.06776 5.11066 5.19329 5.24184 5.33368 5.37733 5.54568 5.64006 5.82682 6.00020 6.19334 6.48201 6.86012 7.14493 7.40929 8.91276 Molecular weight = 238.15amu Principal moments of inertia in cm(-1) A = 0.023904 B = 0.006475 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.077375 B = 4323.537415 C = 5018.046949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.121 3.879 4 N -0.364 5.364 5 N -0.346 5.346 6 C 0.192 3.808 7 N -0.568 5.568 8 C 0.294 3.706 9 C 0.129 3.871 10 N -0.540 5.540 11 C 0.047 3.953 12 C 0.209 3.791 13 C -0.522 4.522 14 H 0.060 0.940 15 C 0.008 3.992 16 N -0.930 5.930 17 Si 0.963 3.037 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.280 1.280 21 H 0.059 0.941 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.249 0.751 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.021 0.979 34 H 0.020 0.980 35 H -0.028 1.028 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.401 -6.633 -11.701 13.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.000 4.000 4 N -0.154 5.154 5 N -0.174 5.174 6 C -0.110 4.110 7 N -0.297 5.297 8 C 0.017 3.983 9 C -0.002 4.002 10 N -0.265 5.265 11 C -0.101 4.101 12 C 0.084 3.916 13 C -0.560 4.560 14 H 0.078 0.922 15 C -0.190 4.190 16 N -0.570 5.570 17 Si 0.788 3.212 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.206 1.206 21 H 0.078 0.922 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.265 0.735 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.038 0.962 35 H -0.010 1.010 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.043 -6.489 -12.450 14.039 hybrid contribution 0.218 0.468 1.163 1.272 sum 0.175 -6.020 -11.287 12.794 Atomic orbital electron populations 1.21676 0.92570 1.03204 1.02836 1.21817 0.98143 0.94062 1.02601 1.22145 0.72732 0.99911 1.05191 1.50487 1.08582 1.52889 1.03448 1.77904 1.05630 1.27706 1.06166 1.26590 0.95167 0.97594 0.91676 1.70484 1.23097 1.26529 1.09635 1.24214 0.85157 0.95133 0.93823 1.20529 1.02288 0.92204 0.85171 1.61974 1.23383 1.08264 1.32882 1.22138 0.89406 0.98657 0.99897 1.19456 0.92283 0.96899 0.83001 1.21418 1.36578 0.95017 1.03011 0.92213 1.25770 0.96021 1.01581 0.95647 1.70058 1.42660 1.34983 1.09318 0.85424 0.77996 0.79683 0.78052 1.19178 1.20321 1.20597 0.92163 0.91476 0.90882 0.91585 0.91798 0.88076 0.87981 0.73523 0.88051 0.91461 0.92477 0.91935 0.96055 0.96168 1.00994 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.91 71.98 0.71 -1.75 16 2 C -0.13 -2.69 6.26 30.59 0.19 -2.50 16 3 C 0.12 3.13 6.26 86.38 0.54 3.67 16 4 N -0.36 -11.37 3.64 -338.50 -1.23 -12.60 16 5 N -0.35 -10.72 12.70 -61.24 -0.78 -11.49 16 6 C 0.19 5.48 13.03 180.77 2.36 7.83 16 7 N -0.57 -19.06 11.01 -191.78 -2.11 -21.17 16 8 C 0.29 9.92 6.75 138.23 0.93 10.85 16 9 C 0.13 4.49 4.97 85.56 0.43 4.92 16 10 N -0.54 -22.42 4.70 -931.63 -4.38 -26.80 16 11 C 0.05 1.90 9.24 127.69 1.18 3.08 16 12 C 0.21 10.38 4.71 85.56 0.40 10.78 16 13 C -0.52 -28.20 8.39 25.60 0.21 -27.99 16 14 H 0.06 3.23 7.17 -2.91 -0.02 3.21 16 15 C 0.01 0.46 5.46 84.65 0.46 0.92 16 16 N -0.93 -53.36 13.29 21.45 0.28 -53.08 16 17 Si 0.96 42.90 29.54 68.60 2.03 44.93 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 21 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.10 2.84 7.60 -2.39 -0.02 2.82 16 27 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.25 4.68 8.06 -2.91 -0.02 4.65 16 29 H 0.10 3.25 7.57 -2.38 -0.02 3.23 16 30 H 0.07 2.33 7.97 -2.39 -0.02 2.31 16 31 H 0.06 2.17 7.47 -2.38 -0.02 2.15 16 32 H 0.06 2.66 6.66 -2.39 -0.02 2.64 16 33 H 0.02 0.82 8.02 -2.39 -0.02 0.80 16 34 H 0.02 1.04 7.86 -2.39 -0.02 1.02 16 35 H -0.03 -1.49 8.12 -2.39 -0.02 -1.51 16 36 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -63.26 304.84 2.28 -60.98 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.04 Total: 9.41 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 7.42 Total: 9.81 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -8.21 Total: -125.14 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -63.26 2.28 -60.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088593013.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.889 kcal (2) G-P(sol) polarization free energy of solvation -63.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds