Wall clock time and date at job start Sun Mar 29 2020 23:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47316 * 240.00244 * 2 1 3 5 5 N 1.46503 * 109.46722 * 295.31093 * 4 2 1 6 6 N 1.40444 * 126.82757 * 94.50449 * 5 4 2 7 7 C 1.30704 * 106.79708 * 179.97438 * 6 5 4 8 8 N 1.33243 * 108.94713 * 0.02562 * 7 6 5 9 9 C 1.30838 * 109.82646 * 359.75570 * 8 7 6 10 10 C 1.50699 * 125.95824 * 180.24282 * 9 8 7 11 11 N 1.46492 * 109.47253 * 84.51007 * 10 9 8 12 12 C 1.46498 * 120.00055 * 270.31360 * 11 10 9 13 13 C 1.36942 * 120.00197 * 90.31884 * 11 10 9 14 14 H 1.07998 * 119.99872 * 22.09735 * 13 11 10 15 15 C 1.38808 * 119.99921 * 202.09597 * 13 11 10 16 16 N 1.31615 * 120.00256 * 12.14946 * 15 13 11 17 17 Si 1.86801 * 119.99827 * 192.13997 * 15 13 11 18 18 H 1.48505 * 109.46629 * 90.00696 * 17 15 13 19 19 H 1.48501 * 109.47063 * 210.00242 * 17 15 13 20 20 H 1.48498 * 109.47290 * 330.00499 * 17 15 13 21 21 H 1.09000 * 109.46993 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47548 * 300.00067 * 1 2 3 23 23 H 1.09007 * 109.46897 * 60.00478 * 1 2 3 24 24 H 1.08997 * 109.47051 * 119.99555 * 2 1 3 25 25 H 1.08992 * 109.47366 * 60.00112 * 3 2 1 26 26 H 1.09001 * 109.46697 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.46949 * 299.99617 * 3 2 1 28 28 H 1.08998 * 109.47598 * 55.30569 * 4 2 1 29 29 H 1.09004 * 109.47585 * 175.31334 * 4 2 1 30 30 H 1.07997 * 125.52722 * 180.02562 * 7 6 5 31 31 H 1.09004 * 109.46695 * 204.50871 * 10 9 8 32 32 H 1.09005 * 109.47171 * 324.50534 * 10 9 8 33 33 H 1.09003 * 109.47109 * 94.22770 * 12 11 10 34 34 H 1.08999 * 109.47477 * 214.23135 * 12 11 10 35 35 H 1.09002 * 109.46926 * 334.23176 * 12 11 10 36 36 H 0.97001 * 120.00668 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.6461 -2.1312 -1.1941 6 7 0.5041 -2.7094 -1.7721 7 6 0.5388 -3.9837 -1.4836 8 7 1.6304 -4.2343 -0.7618 9 6 2.3083 -3.1295 -0.5843 10 6 3.6040 -2.9984 0.1742 11 7 4.7234 -3.3302 -0.7106 12 6 5.1960 -4.7136 -0.8067 13 6 5.3283 -2.3473 -1.4477 14 1 5.2487 -1.3152 -1.1398 15 6 6.0436 -2.6776 -2.5905 16 7 5.9468 -3.8869 -3.1009 17 14 7.1434 -1.4056 -3.4041 18 1 8.5087 -1.4895 -2.8259 19 1 7.2073 -1.6679 -4.8644 20 1 6.5887 -0.0484 -3.1687 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6098 -0.2582 -2.1373 29 1 3.1269 -0.6491 -1.2923 30 1 -0.1979 -4.7149 -1.7818 31 1 3.7140 -1.9744 0.5310 32 1 3.5980 -3.6807 1.0242 33 1 4.7086 -5.2064 -1.6480 34 1 6.2754 -4.7191 -0.9580 35 1 4.9554 -5.2445 0.1144 36 1 6.4464 -4.1176 -3.8998 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088593065.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:53 Heat of formation + Delta-G solvation = 82.788022 kcal Electronic energy + Delta-G solvation = -17749.908825 eV Core-core repulsion = 15077.881755 eV Total energy + Delta-G solvation = -2672.027070 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.149 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.84236 -37.75711 -37.40895 -33.82073 -33.31720 -31.90541 -28.48803 -28.10865 -27.90502 -27.13534 -23.68725 -22.77173 -21.75360 -20.68406 -18.78353 -17.88547 -16.98313 -16.56717 -16.32706 -15.54483 -15.30558 -15.21730 -14.83061 -14.57290 -14.17108 -13.83828 -13.29840 -13.11929 -12.97754 -12.85946 -12.68484 -12.52740 -12.35157 -12.19081 -12.06464 -11.94058 -11.89984 -11.67407 -10.80689 -10.69908 -10.47486 -10.27875 -8.97036 -7.87643 -5.39215 0.83581 1.46066 1.47663 1.55601 1.60421 2.14893 2.49063 3.25375 3.53520 3.61412 3.70759 3.80200 3.97673 4.09059 4.22592 4.40973 4.54660 4.68362 4.75361 4.79647 4.85250 4.89259 4.94390 5.02519 5.16153 5.30679 5.32975 5.39334 5.56212 5.60735 5.70252 5.73532 6.09655 6.23982 7.05495 7.36835 7.74258 8.20593 9.15360 Molecular weight = 238.15amu Principal moments of inertia in cm(-1) A = 0.020725 B = 0.009539 C = 0.007560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.719898 B = 2934.495009 C = 3702.663898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.102 4.102 3 C -0.139 4.139 4 C 0.127 3.873 5 N -0.367 5.367 6 N -0.355 5.355 7 C 0.179 3.821 8 N -0.580 5.580 9 C 0.269 3.731 10 C 0.216 3.784 11 N -0.593 5.593 12 C 0.182 3.818 13 C -0.264 4.264 14 H 0.088 0.912 15 C -0.050 4.050 16 N -0.936 5.936 17 Si 0.967 3.033 18 H -0.283 1.283 19 H -0.305 1.305 20 H -0.257 1.257 21 H 0.031 0.969 22 H 0.072 0.928 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.237 0.763 31 H 0.091 0.909 32 H 0.092 0.908 33 H -0.007 1.007 34 H 0.026 0.974 35 H 0.033 0.967 36 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.620 8.792 7.440 13.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 C -0.196 4.196 4 C 0.005 3.995 5 N -0.156 5.156 6 N -0.184 5.184 7 C -0.124 4.124 8 N -0.310 5.310 9 C -0.010 4.010 10 C 0.085 3.915 11 N -0.314 5.314 12 C 0.037 3.963 13 C -0.394 4.394 14 H 0.106 0.894 15 C -0.246 4.246 16 N -0.581 5.581 17 Si 0.795 3.205 18 H -0.209 1.209 19 H -0.232 1.232 20 H -0.181 1.181 21 H 0.050 0.950 22 H 0.091 0.909 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.253 0.747 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.012 0.988 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.964 8.841 7.006 13.809 hybrid contribution 0.635 -0.007 -1.189 1.348 sum -7.329 8.834 5.818 12.868 Atomic orbital electron populations 1.21728 0.94353 1.00845 1.02400 1.21484 0.96896 0.97694 0.96087 1.21741 1.01615 0.93013 1.03261 1.22119 1.01257 0.75187 1.00929 1.50401 1.16491 1.09602 1.39121 1.77752 1.06672 1.10812 1.23126 1.26396 0.96882 0.93130 0.95997 1.70424 1.08366 1.28061 1.24100 1.26603 0.96009 0.83453 0.94955 1.19911 0.78153 1.02118 0.91291 1.44294 1.31420 1.05912 1.49800 1.20537 0.96850 0.83556 0.95383 1.19626 1.26563 0.89814 1.03419 0.89394 1.25907 1.02809 0.98501 0.97378 1.70293 1.44108 1.21177 1.22525 0.85267 0.79192 0.79466 0.76565 1.20947 1.23186 1.18143 0.95011 0.90903 0.92454 0.90804 0.90354 0.91892 0.91835 0.89208 0.88697 0.74713 0.89084 0.88964 0.98836 0.95496 0.94892 0.94395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.08 71.98 0.65 -2.50 16 2 C -0.10 -2.40 3.13 -10.79 -0.03 -2.43 16 3 C -0.14 -2.48 9.19 71.98 0.66 -1.81 16 4 C 0.13 3.94 5.40 86.38 0.47 4.40 16 5 N -0.37 -14.01 3.15 -338.48 -1.07 -15.07 16 6 N -0.35 -13.87 12.11 -61.25 -0.74 -14.61 16 7 C 0.18 6.79 13.03 180.77 2.36 9.15 16 8 N -0.58 -24.88 11.19 -191.78 -2.15 -27.02 16 9 C 0.27 11.11 7.57 138.22 1.05 12.16 16 10 C 0.22 8.38 5.96 85.63 0.51 8.89 16 11 N -0.59 -28.47 2.91 -731.32 -2.13 -30.59 16 12 C 0.18 9.09 9.01 127.77 1.15 10.24 16 13 C -0.26 -13.39 9.31 84.03 0.78 -12.60 16 14 H 0.09 4.07 7.29 -2.91 -0.02 4.05 16 15 C -0.05 -2.70 5.11 84.86 0.43 -2.27 16 16 N -0.94 -55.24 10.61 21.65 0.23 -55.01 16 17 Si 0.97 43.12 29.57 68.60 2.03 45.15 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 20 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 21 H 0.03 0.90 7.20 -2.39 -0.02 0.88 16 22 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.07 1.78 8.00 -2.39 -0.02 1.76 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.09 2.71 8.14 -2.39 -0.02 2.70 16 29 H 0.09 3.16 6.86 -2.39 -0.02 3.15 16 30 H 0.24 6.79 8.06 -2.91 -0.02 6.77 16 31 H 0.09 3.05 7.35 -2.39 -0.02 3.03 16 32 H 0.09 3.26 7.87 -2.38 -0.02 3.24 16 33 H -0.01 -0.39 7.42 -2.39 -0.02 -0.41 16 34 H 0.03 1.42 7.19 -2.39 -0.02 1.40 16 35 H 0.03 1.42 7.85 -2.39 -0.02 1.40 16 36 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -66.73 299.89 5.25 -61.48 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 1.05 Total: 12.46 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: 8.03 Total: 23.22 kcal Atomic # 7 Polarization: -136.46 SS G_CDS: -5.85 Total: -142.31 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -66.73 5.25 -61.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088593065.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.271 kcal (2) G-P(sol) polarization free energy of solvation -66.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds