Wall clock time and date at job start Sun Mar 29 2020 22:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.47331 * 2 1 4 4 C 1.42898 * 113.99897 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47559 * 30.00034 * 4 3 2 6 6 C 1.53000 * 109.47183 * 269.99775 * 4 3 2 7 7 C 1.50703 * 109.47231 * 150.00157 * 4 3 2 8 8 N 1.30503 * 125.64789 * 45.02244 * 7 4 3 9 9 C 1.34124 * 109.25583 * 179.97438 * 8 7 4 10 10 C 1.34675 * 108.02139 * 359.97438 * 9 8 7 11 11 N 1.35041 * 125.65282 * 224.99972 * 7 4 3 12 12 C 1.46499 * 126.39322 * 0.05411 * 11 7 4 13 13 C 1.53000 * 109.47356 * 84.98589 * 12 11 7 14 14 C 1.50702 * 109.47202 * 179.97438 * 13 12 11 15 15 H 1.07989 * 120.00073 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99718 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00051 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99560 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46974 * 90.00482 * 18 16 14 20 20 H 1.48501 * 109.46963 * 209.99826 * 18 16 14 21 21 H 1.48494 * 109.47366 * 330.00122 * 18 16 14 22 22 H 1.09001 * 109.46702 * 299.99637 * 1 2 3 23 23 H 1.08996 * 109.47223 * 59.99948 * 1 2 3 24 24 H 1.08999 * 109.47331 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46702 * 240.00363 * 2 1 3 26 26 H 1.09004 * 109.47338 * 120.00707 * 2 1 3 27 27 H 1.09003 * 109.47058 * 300.00783 * 6 4 3 28 28 H 1.09007 * 109.46816 * 59.99694 * 6 4 3 29 29 H 1.09000 * 109.47609 * 179.97438 * 6 4 3 30 30 H 1.07993 * 125.99299 * 180.02562 * 9 8 7 31 31 H 1.07999 * 126.59056 * 179.74167 * 10 9 8 32 32 H 1.09003 * 109.47118 * 204.98131 * 12 11 7 33 33 H 1.08998 * 109.47468 * 324.98367 * 12 11 7 34 34 H 1.09003 * 109.46633 * 299.99839 * 13 12 11 35 35 H 1.09003 * 109.47437 * 59.99360 * 13 12 11 36 36 H 0.96994 * 119.99820 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8632 0.6016 -0.5147 6 6 3.9400 1.5001 1.4417 7 6 3.8343 2.7264 -0.7109 8 7 3.2870 3.8993 -0.5443 9 6 3.8998 4.7902 -1.3379 10 6 4.8640 4.1449 -2.0218 11 7 4.8223 2.8356 -1.6250 12 6 5.6880 1.7545 -2.1027 13 6 4.9909 1.0088 -3.2424 14 6 5.8817 -0.1029 -3.7341 15 1 6.8480 -0.2619 -3.2791 16 6 5.4623 -0.9177 -4.7644 17 7 4.2853 -0.7243 -5.3183 18 14 6.5668 -2.2951 -5.3744 19 1 6.2805 -3.5349 -4.6088 20 1 6.3092 -2.5339 -6.8173 21 1 7.9884 -1.9117 -5.1822 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5140 0.8899 27 1 3.5076 2.3585 1.9559 28 1 3.6481 0.5841 1.9556 29 1 5.0266 1.5856 1.4413 30 1 3.6624 5.8409 -1.4143 31 1 5.5370 4.5766 -2.7479 32 1 6.6272 2.1737 -2.4637 33 1 5.8895 1.0623 -1.2852 34 1 4.0517 0.5896 -2.8813 35 1 4.7893 1.7010 -4.0599 36 1 3.9902 -1.2977 -6.0428 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124245107.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:08 Heat of formation + Delta-G solvation = -2.739685 kcal Electronic energy + Delta-G solvation = -17201.163219 eV Core-core repulsion = 14493.134638 eV Total energy + Delta-G solvation = -2708.028581 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.59486 -37.92002 -34.70669 -32.66428 -32.56831 -30.05433 -29.45887 -28.14548 -25.09710 -23.50680 -22.45719 -21.67304 -20.67863 -19.13655 -16.98662 -16.38628 -16.09621 -15.44787 -14.91537 -14.69721 -14.22947 -13.86651 -13.27128 -12.99134 -12.88804 -12.76801 -12.47273 -12.32542 -11.85346 -11.60778 -11.49982 -11.15588 -11.10815 -10.86957 -10.60421 -10.34954 -10.13294 -9.53116 -9.44220 -9.28728 -8.83235 -8.56960 -7.91027 -6.20353 -4.27170 2.51980 3.19410 3.23922 3.27611 3.30330 3.59602 4.10588 4.30810 4.76352 5.13992 5.15914 5.22052 5.34200 5.43243 5.45823 5.51211 5.58402 5.68449 5.82894 5.91549 5.97743 5.99307 6.10903 6.17108 6.27412 6.33042 6.36935 6.84298 7.21361 7.36190 7.41791 7.46694 7.65632 7.80890 8.09516 8.63551 8.78583 9.38792 10.90374 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.007483 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.900521 B = 3740.792436 C = 4616.411088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.364 6.364 4 C 0.177 3.823 5 H 0.080 0.920 6 C -0.163 4.163 7 C 0.199 3.801 8 N -0.476 5.476 9 C -0.046 4.046 10 C -0.050 4.050 11 N -0.436 5.436 12 C 0.098 3.902 13 C 0.015 3.985 14 C -0.532 4.532 15 H 0.060 0.940 16 C 0.062 3.938 17 N -0.887 5.887 18 Si 0.897 3.103 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.164 0.836 31 H 0.170 0.830 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.022 0.978 35 H 0.024 0.976 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.833 2.748 9.620 10.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.024 4.024 3 O -0.282 6.282 4 C 0.117 3.883 5 H 0.098 0.902 6 C -0.221 4.221 7 C -0.063 4.063 8 N -0.196 5.196 9 C -0.196 4.196 10 C -0.185 4.185 11 N -0.117 5.117 12 C -0.022 4.022 13 C -0.023 4.023 14 C -0.571 4.571 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.524 5.524 18 Si 0.724 3.276 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.181 0.819 31 H 0.187 0.813 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.041 0.959 35 H 0.043 0.957 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.630 2.867 9.958 10.490 hybrid contribution 1.431 -1.087 -1.220 2.172 sum -0.199 1.780 8.738 8.920 Atomic orbital electron populations 1.21699 0.93827 1.01904 1.03027 1.22569 0.95606 0.83934 1.00322 1.88017 1.19222 1.26019 1.94941 1.19964 0.82580 0.91397 0.94317 0.90215 1.22198 1.01201 1.02943 0.95748 1.22598 0.91996 0.95802 0.95945 1.70136 1.26429 0.98869 1.24137 1.22199 0.97827 0.99566 0.99963 1.22686 1.05761 0.84308 1.05781 1.45738 1.26945 1.09064 1.29933 1.22426 0.93173 0.86944 0.99701 1.19430 0.96231 0.95000 0.91653 1.20985 1.03074 1.14542 1.18463 0.92212 1.25010 0.95173 0.97670 0.96202 1.69973 1.18912 1.38800 1.24739 0.86513 0.80813 0.82083 0.78154 1.20456 1.21017 1.19709 0.92084 0.91770 0.91298 0.92695 0.93567 0.90999 0.91876 0.91784 0.81884 0.81294 0.89816 0.90295 0.95919 0.95718 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 37.16 0.38 -1.49 16 2 C 0.05 0.78 6.47 37.16 0.24 1.02 16 3 O -0.36 -6.63 9.97 -35.23 -0.35 -6.98 16 4 C 0.18 3.11 3.02 -27.88 -0.08 3.02 16 5 H 0.08 1.42 6.74 -51.93 -0.35 1.07 16 6 C -0.16 -2.30 9.51 37.16 0.35 -1.95 16 7 C 0.20 3.93 6.79 -155.41 -1.05 2.88 16 8 N -0.48 -9.70 11.25 -10.82 -0.12 -9.82 16 9 C -0.05 -0.82 11.87 -17.81 -0.21 -1.03 16 10 C -0.05 -0.88 11.58 -16.56 -0.19 -1.07 16 11 N -0.44 -8.40 2.75 -113.90 -0.31 -8.72 16 12 C 0.10 1.92 5.55 -4.04 -0.02 1.90 16 13 C 0.01 0.36 5.30 -27.88 -0.15 0.21 16 14 C -0.53 -14.00 9.11 -34.44 -0.31 -14.32 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 18 Si 0.90 20.53 29.54 -169.99 -5.02 15.50 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 26 H 0.05 0.58 7.87 -51.93 -0.41 0.17 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.76 7.87 -51.93 -0.41 0.35 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.16 2.35 8.06 -52.49 -0.42 1.92 16 31 H 0.17 2.44 8.06 -52.49 -0.42 2.01 16 32 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 33 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 34 H 0.02 0.61 8.04 -51.93 -0.42 0.19 16 35 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 LS Contribution 308.38 15.07 4.65 4.65 Total: -1.00 -31.23 308.38 -7.32 -38.55 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.74 Total: 0.95 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -1.15 Total: -9.23 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.30 Total: -43.45 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.35 Total: -6.98 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.23 -7.32 -38.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124245107.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.807 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds