Wall clock time and date at job start Sun Mar 29 2020 22:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.54577 * 2 1 4 4 C 1.53099 * 109.50856 * 120.10759 * 2 1 3 5 5 N 1.47016 * 109.26096 * 176.78357 * 4 2 1 6 6 C 1.46901 * 110.99837 * 177.60912 * 5 4 2 7 7 C 1.53000 * 109.46769 * 170.00057 * 6 5 4 8 8 H 1.09002 * 109.47069 * 304.99474 * 7 6 5 9 9 C 1.47199 * 109.47256 * 64.99890 * 7 6 5 10 10 N 5.68804 * 158.40923 * 74.48190 * 2 1 3 11 11 C 1.53006 * 109.46846 * 185.00040 * 7 6 5 12 12 C 1.50699 * 109.46678 * 174.99845 * 11 7 6 13 13 H 1.07994 * 120.00629 * 0.02562 * 12 11 7 14 14 C 1.37887 * 119.99470 * 179.97438 * 12 11 7 15 15 N 1.31512 * 119.99601 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99988 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.47056 * 90.00463 * 16 14 12 18 18 H 1.48504 * 109.46880 * 210.00248 * 16 14 12 19 19 H 1.48493 * 109.47279 * 330.00172 * 16 14 12 20 20 C 1.47012 * 110.75161 * 301.38385 * 5 4 2 21 21 C 1.53100 * 109.25792 * 58.61337 * 20 5 4 22 22 O 1.43012 * 109.50846 * 239.88889 * 2 1 3 23 23 H 1.09003 * 109.47171 * 299.89790 * 1 2 3 24 24 H 1.09008 * 109.47073 * 59.89041 * 1 2 3 25 25 H 1.08994 * 109.47839 * 179.89368 * 1 2 3 26 26 H 1.08998 * 109.50302 * 56.84589 * 4 2 1 27 27 H 1.09000 * 109.53933 * 296.74074 * 4 2 1 28 28 H 1.09002 * 109.47401 * 49.99764 * 6 5 4 29 29 H 1.09001 * 109.46874 * 289.99776 * 6 5 4 30 30 H 1.09004 * 109.46746 * 294.99703 * 11 7 6 31 31 H 1.08998 * 109.47205 * 54.99872 * 11 7 6 32 32 H 0.97008 * 119.99562 * 179.97438 * 15 14 12 33 33 H 1.08999 * 109.50860 * 178.55550 * 20 5 4 34 34 H 1.09004 * 109.50826 * 298.68290 * 20 5 4 35 35 H 1.08998 * 109.50215 * 183.21592 * 21 20 5 36 36 H 1.08998 * 109.53874 * 63.11054 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7239 1.2484 5 7 3.5093 -0.7884 1.2045 6 6 4.0445 -1.4269 2.4144 7 6 5.5380 -1.7019 2.2276 8 1 5.6887 -2.2906 1.3227 9 6 6.2609 -0.4252 2.1086 10 7 6.8188 0.5600 2.0168 11 6 6.0685 -2.4779 3.4349 12 6 7.5078 -2.8554 3.1963 13 1 7.9955 -2.5701 2.2760 14 6 8.2023 -3.5642 4.1536 15 7 9.4585 -3.8933 3.9457 16 14 7.3593 -4.0558 5.7465 17 1 6.7228 -5.3869 5.5793 18 1 8.3638 -4.1211 6.8384 19 1 6.3215 -3.0502 6.0881 20 6 3.9639 -1.4884 -0.0057 21 6 3.4334 -0.7569 -1.2416 22 8 2.0075 -0.6763 -1.1661 23 1 -0.3634 0.5123 0.8909 24 1 -0.3634 0.5156 -0.8891 25 1 -0.3634 -1.0276 -0.0019 26 1 1.6331 -1.7342 1.2760 27 1 1.7272 -0.1801 2.1394 28 1 3.5213 -2.3666 2.5912 29 1 3.9010 -0.7649 3.2683 30 1 5.9993 -1.8544 4.3264 31 1 5.4746 -3.3809 3.5760 32 1 9.9472 -4.3916 4.6193 33 1 5.0535 -1.5021 -0.0306 34 1 3.5865 -2.5110 0.0018 35 1 3.7200 -1.3043 -2.1395 36 1 3.8533 0.2483 -1.2785 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249104005.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:58 Heat of formation + Delta-G solvation = -43.297736 kcal Electronic energy + Delta-G solvation = -17085.754451 eV Core-core repulsion = 14375.967141 eV Total energy + Delta-G solvation = -2709.787310 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.80783 -38.61050 -36.55744 -35.34864 -33.85748 -33.41286 -30.05053 -28.96189 -26.30544 -24.83332 -23.41100 -22.71743 -21.34807 -18.94555 -18.32285 -17.39052 -17.23532 -16.41231 -16.23084 -15.76599 -15.75366 -15.15213 -14.81059 -14.67247 -14.31701 -13.88748 -13.57402 -13.43097 -13.18308 -13.11853 -12.84050 -12.78187 -12.59286 -12.25987 -12.09565 -11.99160 -11.68595 -11.63650 -11.42894 -11.19821 -10.74207 -10.53950 -9.31912 -8.25859 -6.31860 1.41851 1.45106 1.55141 1.98447 2.05909 2.40194 2.73077 2.89298 3.10376 3.24766 3.77969 3.95879 4.00014 4.20710 4.22263 4.28626 4.30940 4.50846 4.58257 4.67901 4.69192 4.79289 4.81475 4.89436 4.91520 5.02466 5.14198 5.19035 5.31888 5.40319 5.61313 5.94599 6.00580 6.24520 6.25579 6.74985 6.84159 7.32838 8.91038 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.037661 B = 0.005545 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.303032 B = 5048.522512 C = 5321.782929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.083 3.917 3 H 0.056 0.944 4 C 0.026 3.974 5 N -0.555 5.555 6 C 0.070 3.930 7 C 0.017 3.983 8 H 0.116 0.884 9 C 0.260 3.740 10 N -0.509 5.509 11 C -0.002 4.002 12 C -0.533 4.533 13 H 0.029 0.971 14 C 0.005 3.995 15 N -0.953 5.953 16 Si 0.948 3.052 17 H -0.257 1.257 18 H -0.295 1.295 19 H -0.237 1.237 20 C 0.008 3.992 21 C 0.067 3.933 22 O -0.397 6.397 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.029 0.971 31 H 0.062 0.938 32 H 0.265 0.735 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.114 0.886 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.855 3.128 -5.154 21.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.025 3.975 3 H 0.074 0.926 4 C -0.101 4.101 5 N -0.280 5.280 6 C -0.059 4.059 7 C -0.004 4.004 8 H 0.134 0.866 9 C -0.056 4.056 10 N -0.186 5.186 11 C -0.041 4.041 12 C -0.571 4.571 13 H 0.047 0.953 14 C -0.192 4.192 15 N -0.594 5.594 16 Si 0.771 3.229 17 H -0.182 1.182 18 H -0.221 1.221 19 H -0.160 1.160 20 C -0.120 4.120 21 C -0.010 4.010 22 O -0.317 6.317 23 H 0.109 0.891 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.132 0.868 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -19.829 4.945 -5.389 21.135 hybrid contribution 0.562 -1.326 0.806 1.650 sum -19.267 3.620 -4.583 20.133 Atomic orbital electron populations 1.21734 0.90984 1.03287 1.03528 1.22311 0.96132 0.95054 0.84002 0.92565 1.22868 0.86437 1.00901 0.99913 1.62273 1.10083 1.53418 1.02246 1.22203 0.90764 0.99898 0.93007 1.19228 0.92640 0.85693 1.02859 0.86633 1.29330 0.91463 0.93906 0.90943 1.81001 1.11701 1.14770 1.11117 1.19588 0.94687 0.96511 0.93347 1.21377 0.96999 1.35014 1.03686 0.95276 1.26030 0.95224 0.95398 1.02572 1.70089 1.11494 1.40905 1.36892 0.85691 0.78921 0.80344 0.77950 1.18158 1.22149 1.16009 1.22929 1.01332 0.96989 0.90780 1.22676 0.80481 1.00066 0.97790 1.87947 1.21461 1.78589 1.43656 0.89109 0.91630 0.91714 0.93071 0.88289 0.90270 0.89228 0.95275 0.92008 0.92617 0.90079 0.92623 0.86793 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.57 71.98 0.69 -1.22 16 2 C 0.08 1.61 3.43 30.62 0.10 1.71 16 3 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 4 C 0.03 0.51 4.91 86.31 0.42 0.93 16 5 N -0.55 -13.47 4.58 -895.20 -4.10 -17.57 16 6 C 0.07 1.74 4.64 86.30 0.40 2.14 16 7 C 0.02 0.58 1.73 -12.60 -0.02 0.56 16 8 H 0.12 3.74 5.95 -2.39 -0.01 3.72 16 9 C 0.26 10.56 13.30 89.44 1.19 11.75 16 10 N -0.51 -23.10 18.54 20.00 0.37 -22.73 16 11 C 0.00 -0.09 3.49 29.85 0.10 0.01 16 12 C -0.53 -28.62 9.15 25.60 0.23 -28.38 16 13 H 0.03 1.77 7.84 -2.91 -0.02 1.75 16 14 C 0.00 0.26 5.47 84.66 0.46 0.72 16 15 N -0.95 -58.76 13.96 21.45 0.30 -58.46 16 16 Si 0.95 41.11 27.47 68.60 1.88 43.00 16 17 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 18 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 19 H -0.24 -9.18 6.54 99.48 0.65 -8.53 16 20 C 0.01 0.18 4.92 86.32 0.42 0.61 16 21 C 0.07 1.48 7.01 72.02 0.50 1.98 16 22 O -0.40 -9.22 10.47 -148.98 -1.56 -10.78 16 23 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.08 1.63 8.08 -2.39 -0.02 1.61 16 29 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.03 1.17 7.20 -2.38 -0.02 1.15 16 31 H 0.06 2.18 7.57 -2.39 -0.02 2.16 16 32 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 33 H 0.08 2.13 5.68 -2.39 -0.01 2.12 16 34 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -68.87 295.43 2.41 -66.46 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.99 Total: 9.26 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 4.52 Total: -9.18 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -3.43 Total: -98.75 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -1.56 Total: -10.78 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 1.88 Total: 43.00 kcal Total: -68.87 2.41 -66.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249104005.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.162 kcal (2) G-P(sol) polarization free energy of solvation -68.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds