Wall clock time and date at job start Sun Mar 29 2020 23:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00088 * 2 1 4 4 H 1.48495 * 109.47455 * 239.99811 * 3 2 1 5 5 H 1.48500 * 109.46934 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46954 * 119.99678 * 3 2 1 7 7 C 1.37880 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99958 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99836 * 0.28116 * 7 2 1 10 10 C 1.52997 * 109.47250 * 179.72037 * 9 7 2 11 11 N 1.46896 * 109.47294 * 179.97438 * 10 9 7 12 12 C 1.46956 * 111.00042 * 293.80298 * 11 10 9 13 13 C 1.53052 * 109.36355 * 176.81500 * 12 11 10 14 14 N 1.46957 * 109.36852 * 58.39556 * 13 12 11 15 15 C 1.46896 * 111.00039 * 176.81203 * 14 13 12 16 16 C 1.53784 * 113.61832 * 289.18531 * 15 14 13 17 17 C 1.53950 * 87.02046 * 220.04784 * 16 15 14 18 18 C 1.53776 * 113.61725 * 191.57713 * 15 14 13 19 19 C 1.46956 * 110.88340 * 300.68282 * 14 13 12 20 20 C 1.46957 * 111.00039 * 169.99900 * 11 10 9 21 21 H 0.96998 * 120.00042 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.46745 * 299.72097 * 9 7 2 23 23 H 1.09000 * 109.47368 * 59.72437 * 9 7 2 24 24 H 1.08999 * 109.47136 * 300.00428 * 10 9 7 25 25 H 1.09007 * 109.46830 * 59.99631 * 10 9 7 26 26 H 1.09002 * 109.48760 * 296.77394 * 12 11 10 27 27 H 1.08994 * 109.49001 * 56.83873 * 12 11 10 28 28 H 1.08997 * 109.48666 * 298.42923 * 13 12 11 29 29 H 1.09004 * 109.50548 * 178.38322 * 13 12 11 30 30 H 1.09003 * 112.84934 * 60.37916 * 15 14 13 31 31 H 1.09004 * 113.60977 * 334.56507 * 16 15 14 32 32 H 1.08997 * 113.61938 * 105.46134 * 16 15 14 33 33 H 1.08994 * 113.53609 * 270.80886 * 17 16 15 34 34 H 1.08998 * 113.66695 * 139.92659 * 17 16 15 35 35 H 1.09002 * 113.61255 * 254.53343 * 18 15 14 36 36 H 1.09005 * 113.61265 * 25.43126 * 18 15 14 37 37 H 1.09002 * 109.48760 * 299.35529 * 19 14 13 38 38 H 1.08991 * 109.50539 * 179.29903 * 19 14 13 39 39 H 1.08999 * 109.48967 * 303.15914 * 20 11 10 40 40 H 1.09003 * 109.48422 * 63.22508 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 -0.0053 10 6 2.2452 -3.6621 -0.0104 11 7 1.5108 -4.9342 -0.0155 12 6 0.7683 -5.1187 1.2392 13 6 -0.0441 -6.4135 1.1625 14 7 0.8626 -7.5441 0.9192 15 6 0.1281 -8.8163 0.9142 16 6 -0.3743 -9.2432 2.3035 17 6 0.0235 -10.6795 1.9175 18 6 1.0398 -10.0542 0.9475 19 6 1.6050 -7.3597 -0.3355 20 6 2.4175 -6.0649 -0.2587 21 1 -0.4850 0.8400 0.0004 22 1 0.6244 -2.5608 0.8844 23 1 0.6244 -2.5530 -0.8955 24 1 2.8720 -3.6003 -0.9001 25 1 2.8719 -3.6082 0.8798 26 1 1.4698 -5.1785 2.0714 27 1 0.0950 -4.2752 1.3907 28 1 -0.7643 -6.3431 0.3473 29 1 -0.5734 -6.5674 2.1029 30 1 -0.6385 -8.8594 0.1405 31 1 0.2132 -8.8333 3.1251 32 1 -1.4471 -9.1081 2.4405 33 1 -0.7725 -11.2325 1.4190 34 1 0.4841 -11.2396 2.7312 35 1 1.1069 -10.5729 -0.0089 36 1 2.0147 -9.8664 1.3976 37 1 0.9036 -7.2999 -1.1677 38 1 2.2784 -8.2032 -0.4873 39 1 2.9463 -5.9111 -1.1993 40 1 3.1376 -6.1353 0.5565 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308755892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:08 Heat of formation + Delta-G solvation = 21.352767 kcal Electronic energy + Delta-G solvation = -17279.807893 eV Core-core repulsion = 14708.657133 eV Total energy + Delta-G solvation = -2571.150760 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.69555 -37.74868 -34.49853 -32.74501 -30.72394 -29.66579 -26.56443 -25.83774 -24.12943 -23.14616 -22.77881 -20.30019 -19.44932 -19.38257 -16.72997 -16.17105 -15.50716 -14.70752 -14.61053 -14.58433 -14.42514 -13.94657 -13.53306 -13.13277 -12.52276 -12.41744 -12.12645 -12.11365 -11.57016 -11.44235 -11.14841 -10.98093 -10.92647 -10.82053 -10.64562 -10.54418 -10.22300 -10.18291 -9.78806 -9.29757 -9.10540 -8.30929 -8.25642 -7.66280 -5.97341 -3.99666 3.35056 3.39234 3.41722 3.98274 4.41164 4.45753 4.58677 4.59489 4.72540 4.82926 5.14226 5.38302 5.38565 5.45501 5.53671 5.55244 5.62942 5.71256 5.72095 5.75160 5.81937 5.82874 6.00491 6.08828 6.19082 6.23024 6.27920 6.38579 6.46840 6.55208 7.00192 7.16656 7.20058 7.56088 7.62191 7.83196 7.92943 8.11138 8.46270 9.07384 9.63739 11.14039 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.063186 B = 0.004219 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.029624 B = 6635.804219 C = 6894.181253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.064 3.936 11 N -0.541 5.541 12 C 0.058 3.942 13 C 0.059 3.941 14 N -0.529 5.529 15 C 0.053 3.947 16 C -0.128 4.128 17 C -0.142 4.142 18 C -0.128 4.128 19 C 0.061 3.939 20 C 0.056 3.944 21 H 0.261 0.739 22 H 0.017 0.983 23 H 0.023 0.977 24 H 0.060 0.940 25 H 0.020 0.980 26 H 0.034 0.966 27 H 0.089 0.911 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.465 -19.210 2.535 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.063 4.063 11 N -0.266 5.266 12 C -0.070 4.070 13 C -0.068 4.068 14 N -0.255 5.255 15 C -0.056 4.056 16 C -0.166 4.166 17 C -0.180 4.180 18 C -0.166 4.166 19 C -0.068 4.068 20 C -0.073 4.073 21 H 0.070 0.930 22 H 0.035 0.965 23 H 0.042 0.958 24 H 0.078 0.922 25 H 0.038 0.962 26 H 0.052 0.948 27 H 0.108 0.892 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.313 -19.078 2.526 19.247 hybrid contribution 0.441 1.010 -0.064 1.104 sum 0.754 -18.068 2.462 18.250 Atomic orbital electron populations 1.69961 1.06021 1.26657 1.50648 1.24990 0.94830 0.99149 0.95319 0.86656 0.79572 0.83156 0.78587 1.20250 1.21288 1.20287 1.21168 0.92954 0.91101 1.50902 0.92859 1.19084 0.93981 0.90115 0.97700 1.22314 0.96713 0.88341 0.98918 1.62252 1.27711 1.02530 1.34087 1.22154 0.97476 0.96708 0.90711 1.22139 0.94166 0.89977 1.00565 1.62439 1.27066 1.01537 1.34411 1.23136 0.95700 0.89281 0.97452 1.22977 1.00681 0.95664 0.97237 1.22748 0.99228 0.96440 0.99603 1.22946 0.98604 0.95584 0.99458 1.22085 0.96969 0.97342 0.90359 1.22111 0.94218 0.90372 1.00555 0.92965 0.96516 0.95818 0.92175 0.96201 0.94795 0.89248 0.94202 0.90785 0.92102 0.89270 0.91820 0.90464 0.91284 0.91931 0.89339 0.94319 0.90957 0.90813 0.94793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.76 4.91 -27.88 -0.14 0.62 16 10 C 0.06 1.39 4.90 -3.83 -0.02 1.37 16 11 N -0.54 -10.30 4.71 -234.47 -1.10 -11.40 16 12 C 0.06 1.03 5.41 -3.77 -0.02 1.01 16 13 C 0.06 0.89 5.53 -3.77 -0.02 0.86 16 14 N -0.53 -7.19 4.65 -225.52 -1.05 -8.24 16 15 C 0.05 0.59 3.16 -66.90 -0.21 0.38 16 16 C -0.13 -1.25 7.17 -25.83 -0.19 -1.44 16 17 C -0.14 -1.19 8.09 -25.83 -0.21 -1.39 16 18 C -0.13 -1.21 7.01 -25.92 -0.18 -1.39 16 19 C 0.06 0.83 5.51 -3.77 -0.02 0.81 16 20 C 0.06 0.89 5.61 -3.77 -0.02 0.87 16 21 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 22 H 0.02 0.46 6.49 -51.93 -0.34 0.12 16 23 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.06 1.29 8.03 -51.93 -0.42 0.87 16 25 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 1.75 6.34 -51.93 -0.33 1.42 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.99 7.59 -51.93 -0.39 0.60 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.85 7.48 -51.93 -0.39 0.47 16 39 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 311.24 15.07 4.69 4.69 Total: -1.00 -29.99 311.24 -10.51 -40.50 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -7.32 Total: -3.96 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -1.44 Total: -12.04 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -1.42 Total: -46.03 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.99 -10.51 -40.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308755892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.852 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds