Wall clock time and date at job start Sun Mar 29 2020 22:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47071 * 111.00047 * 2 1 4 4 C 1.52766 * 108.79858 * 187.91774 * 3 2 1 5 5 C 1.53082 * 110.30613 * 299.04809 * 4 3 2 6 6 H 1.08995 * 112.58341 * 285.90058 * 5 4 3 7 7 C 1.55941 * 106.85785 * 161.34638 * 5 4 3 8 8 C 1.54562 * 102.40559 * 283.47504 * 7 5 4 9 9 N 1.47517 * 106.99343 * 336.15963 * 8 7 5 10 10 C 1.34777 * 126.03199 * 178.71170 * 9 8 7 11 11 O 1.21685 * 120.00334 * 180.29796 * 10 9 8 12 12 C 1.46375 * 119.99674 * 0.02562 * 10 9 8 13 13 H 1.07999 * 120.00201 * 353.76590 * 12 10 9 14 14 C 1.40049 * 119.99873 * 173.77517 * 12 10 9 15 15 N 1.30675 * 120.00151 * 6.07095 * 14 12 10 16 16 Si 1.86800 * 120.00016 * 186.07472 * 14 12 10 17 17 H 1.48501 * 109.47301 * 94.97808 * 16 14 12 18 18 H 1.48503 * 109.47352 * 214.98171 * 16 14 12 19 19 H 1.48507 * 109.46951 * 334.98070 * 16 14 12 20 20 C 1.46832 * 107.94069 * 358.97006 * 9 8 7 21 21 H 1.09008 * 109.30745 * 268.99543 * 20 9 8 22 22 C 1.46700 * 111.00416 * 122.96663 * 2 1 3 23 23 H 1.08995 * 109.47457 * 56.03812 * 1 2 3 24 24 H 1.08997 * 109.46880 * 176.04634 * 1 2 3 25 25 H 1.09002 * 109.46332 * 296.04090 * 1 2 3 26 26 H 1.09002 * 109.57663 * 68.12984 * 3 2 1 27 27 H 1.08994 * 109.58522 * 307.72023 * 3 2 1 28 28 H 1.08997 * 109.33490 * 178.78757 * 4 3 2 29 29 H 1.09006 * 109.19043 * 59.21571 * 4 3 2 30 30 H 1.08999 * 110.82119 * 165.24248 * 7 5 4 31 31 H 1.09003 * 110.98729 * 41.77794 * 7 5 4 32 32 H 1.09003 * 109.92882 * 216.82729 * 8 7 5 33 33 H 1.08998 * 110.10899 * 95.58728 * 8 7 5 34 34 H 0.96996 * 119.99634 * 180.02562 * 15 14 12 35 35 H 1.08995 * 109.14971 * 295.77715 * 22 2 1 36 36 H 1.08999 * 109.15062 * 54.93266 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9961 1.3730 0.0000 4 6 3.5098 1.3193 -0.1992 5 6 4.1688 0.5428 0.9437 6 1 4.1970 1.1105 1.8737 7 6 5.5851 0.1207 0.4460 8 6 5.2669 -1.0625 -0.4963 9 7 3.9661 -1.6137 -0.0720 10 6 3.3146 -2.6425 -0.6497 11 8 2.2393 -3.0053 -0.2106 12 6 3.8977 -3.3194 -1.8091 13 1 4.7979 -2.9331 -2.2637 14 6 3.2881 -4.4681 -2.3291 15 7 2.1372 -4.8678 -1.8566 16 14 4.1203 -5.4289 -3.6980 17 1 4.9089 -6.5426 -3.1124 18 1 3.0891 -5.9803 -4.6133 19 1 5.0244 -4.5274 -4.4565 20 6 3.5032 -0.8400 1.0869 21 1 3.8575 -1.3147 2.0020 22 6 1.9949 -0.7452 1.1490 23 1 -0.3634 0.5741 -0.8523 24 1 -0.3633 -1.0252 -0.0709 25 1 -0.3632 0.4512 0.9234 26 1 1.7698 1.8511 0.9531 27 1 1.5405 1.9393 -0.8123 28 1 3.9070 2.3340 -0.2222 29 1 3.7293 0.8244 -1.1453 30 1 6.2077 -0.2044 1.2795 31 1 6.0650 0.9327 -0.1003 32 1 6.0402 -1.8256 -0.4085 33 1 5.2043 -0.7141 -1.5272 34 1 1.7152 -5.6636 -2.2165 35 1 1.7050 -0.2363 2.0682 36 1 1.5708 -1.7493 1.1484 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336318941.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:09 Heat of formation + Delta-G solvation = -47.544028 kcal Electronic energy + Delta-G solvation = -18312.461567 eV Core-core repulsion = 15602.490124 eV Total energy + Delta-G solvation = -2709.971443 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.26436 -38.30234 -37.06002 -34.59918 -33.22227 -31.39473 -30.47661 -28.04351 -26.90848 -24.27039 -23.97449 -22.46537 -21.41351 -19.63261 -18.23418 -17.47016 -17.07258 -16.26919 -15.96980 -15.91925 -15.54219 -14.86702 -14.60690 -14.18084 -13.88887 -13.81255 -13.31989 -13.24334 -12.96512 -12.82480 -12.66405 -12.63819 -12.45929 -12.27553 -12.18885 -11.94067 -11.49829 -11.19683 -11.05622 -10.86377 -9.48349 -9.02429 -8.84699 -8.19663 -6.73601 1.38198 1.39755 1.54343 2.26029 2.56396 2.95257 3.18071 3.66376 3.68849 3.88061 3.96994 4.23198 4.35587 4.39345 4.42494 4.55182 4.59693 4.62691 4.67044 4.74034 4.88235 4.97066 5.00251 5.06093 5.13738 5.17701 5.35161 5.36079 5.40772 5.54883 5.78364 6.14676 6.26176 6.39282 6.63835 6.95791 7.68975 8.60640 8.82054 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027925 B = 0.009213 C = 0.007758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.438778 B = 3038.424496 C = 3608.229870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.549 5.549 3 C 0.053 3.947 4 C -0.103 4.103 5 C -0.090 4.090 6 H 0.119 0.881 7 C -0.113 4.113 8 C 0.113 3.887 9 N -0.634 5.634 10 C 0.569 3.431 11 O -0.610 6.610 12 C -0.569 4.569 13 H 0.074 0.926 14 C 0.032 3.968 15 N -0.821 5.821 16 Si 0.989 3.011 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.252 1.252 20 C 0.142 3.858 21 H 0.041 0.959 22 C 0.055 3.945 23 H 0.074 0.926 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.271 0.729 35 H 0.036 0.964 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.322 12.987 3.530 14.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.274 5.274 3 C -0.074 4.074 4 C -0.140 4.140 5 C -0.109 4.109 6 H 0.137 0.863 7 C -0.150 4.150 8 C -0.010 4.010 9 N -0.371 5.371 10 C 0.375 3.625 11 O -0.495 6.495 12 C -0.606 4.606 13 H 0.093 0.907 14 C -0.182 4.182 15 N -0.451 5.451 16 Si 0.809 3.191 17 H -0.188 1.188 18 H -0.198 1.198 19 H -0.176 1.176 20 C 0.037 3.963 21 H 0.059 0.941 22 C -0.073 4.073 23 H 0.093 0.907 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.122 0.878 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.712 12.361 3.288 13.631 hybrid contribution -0.379 -0.662 0.110 0.770 sum 4.333 11.699 3.398 12.930 Atomic orbital electron populations 1.22181 0.87443 1.00715 1.00573 1.61940 1.07777 1.14428 1.43260 1.22198 0.96377 0.88296 1.00564 1.21533 0.93849 1.00628 0.98014 1.22498 0.94987 0.93603 0.99824 0.86321 1.22884 0.96274 0.96853 0.99026 1.21904 0.85408 0.95606 0.98119 1.48239 1.21849 1.34218 1.32833 1.18011 0.83304 0.77748 0.83476 1.90452 1.23983 1.67450 1.67656 1.21344 1.12511 1.12473 1.14296 0.90736 1.26833 0.94296 0.97803 0.99266 1.70197 1.15062 1.21057 1.38762 0.85143 0.78475 0.78305 0.77191 1.18839 1.19783 1.17551 1.21078 0.93241 0.92751 0.89248 0.94112 1.21893 0.95902 0.99121 0.90429 0.90678 0.94560 0.94675 0.93816 0.90528 0.88406 0.93523 0.89826 0.87819 0.93653 0.93874 0.91966 0.94647 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 9.59 127.69 1.22 2.63 16 2 N -0.55 -21.77 4.95 -926.52 -4.59 -26.36 16 3 C 0.05 1.55 5.47 86.19 0.47 2.03 16 4 C -0.10 -2.79 5.11 30.54 0.16 -2.63 16 5 C -0.09 -2.45 3.75 -9.37 -0.04 -2.48 16 6 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 7 C -0.11 -2.84 6.33 32.14 0.20 -2.63 16 8 C 0.11 4.19 5.33 86.72 0.46 4.66 16 9 N -0.63 -29.92 3.09 -797.51 -2.47 -32.39 16 10 C 0.57 34.08 7.61 86.36 0.66 34.74 16 11 O -0.61 -40.83 12.57 -4.30 -0.05 -40.88 16 12 C -0.57 -33.81 9.06 24.83 0.22 -33.58 16 13 H 0.07 4.11 7.20 -2.91 -0.02 4.08 16 14 C 0.03 1.88 5.49 85.30 0.47 2.35 16 15 N -0.82 -51.65 11.86 21.84 0.26 -51.39 16 16 Si 0.99 42.93 29.56 68.60 2.03 44.96 16 17 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 20 C 0.14 5.55 3.03 44.74 0.14 5.68 16 21 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 22 C 0.05 2.29 4.26 85.77 0.37 2.66 16 23 H 0.07 2.37 8.08 -2.39 -0.02 2.35 16 24 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.04 1.11 8.11 -2.39 -0.02 1.09 16 27 H 0.08 2.07 8.06 -2.39 -0.02 2.05 16 28 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.05 1.58 6.71 -2.38 -0.02 1.57 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.10 2.00 8.02 -2.39 -0.02 1.98 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.04 1.65 7.69 -2.39 -0.02 1.63 16 34 H 0.27 15.50 8.29 -92.71 -0.77 14.73 16 35 H 0.04 1.27 8.12 -2.39 -0.02 1.25 16 36 H 0.06 3.26 5.68 -2.39 -0.01 3.24 16 Total: -1.00 -77.76 281.34 0.56 -77.20 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.05 Total: 15.46 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 4.33 Total: 13.40 kcal Atomic # 7 Polarization: -103.34 SS G_CDS: -6.80 Total: -110.14 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -0.05 Total: -40.88 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -77.76 0.56 -77.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336318941.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.653 kcal (2) G-P(sol) polarization free energy of solvation -77.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds