Wall clock time and date at job start Sun Mar 29 2020 23:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 114.00002 * 2 1 4 4 H 1.09000 * 110.87493 * 32.38780 * 3 2 1 5 5 C 1.55145 * 110.98861 * 268.54684 * 3 2 1 6 6 C 1.54317 * 103.01557 * 206.21494 * 5 3 2 7 7 N 1.47443 * 107.23524 * 22.28755 * 6 5 3 8 8 C 1.46900 * 111.00330 * 123.25243 * 7 6 5 9 9 C 1.53004 * 109.47048 * 69.87401 * 8 7 6 10 10 H 1.09006 * 109.47304 * 305.00197 * 9 8 7 11 11 C 1.47202 * 109.46954 * 65.00026 * 9 8 7 12 12 N 7.12532 * 131.94005 * 15.72428 * 2 1 3 13 13 C 1.52992 * 109.47321 * 185.00056 * 9 8 7 14 14 C 1.50700 * 109.47257 * 174.99983 * 13 9 8 15 15 H 1.07999 * 119.99988 * 359.97438 * 14 13 9 16 16 C 1.37885 * 120.00047 * 180.02562 * 14 13 9 17 17 N 1.31518 * 119.99792 * 359.72305 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47163 * 59.99902 * 18 16 14 20 20 H 1.48495 * 109.47159 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47290 * 299.99897 * 18 16 14 22 22 C 1.47843 * 108.56520 * 0.98615 * 7 6 5 23 23 H 1.09003 * 109.46744 * 60.00102 * 1 2 3 24 24 H 1.09002 * 109.47098 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46898 * 299.99848 * 1 2 3 26 26 H 1.09001 * 110.70426 * 87.83643 * 5 3 2 27 27 H 1.08995 * 110.70590 * 324.60069 * 5 3 2 28 28 H 1.08997 * 109.89618 * 262.87852 * 6 5 3 29 29 H 1.09009 * 110.02085 * 141.76376 * 6 5 3 30 30 H 1.08998 * 109.47037 * 309.87826 * 8 7 6 31 31 H 1.08997 * 109.47380 * 189.87587 * 8 7 6 32 32 H 1.09004 * 109.47330 * 55.00006 * 13 9 8 33 33 H 1.08997 * 109.47279 * 295.00493 * 13 9 8 34 34 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 35 35 H 1.09000 * 110.37332 * 94.73773 * 22 7 6 36 36 H 1.09001 * 110.37658 * 217.07636 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3826 2.0101 0.5455 5 6 2.2699 1.7982 -1.4480 6 6 3.4356 2.7940 -1.2726 7 7 4.1194 2.4486 -0.0128 8 6 5.5442 2.1762 -0.2445 9 6 6.2606 3.4794 -0.6044 10 1 5.7629 3.9446 -1.4554 11 6 6.2214 4.3951 0.5474 12 7 6.1913 5.1018 1.4364 13 6 7.7160 3.1780 -0.9671 14 6 8.3881 4.4414 -1.4392 15 1 7.8326 5.3668 -1.4773 16 6 9.7121 4.4158 -1.8236 17 7 10.3898 3.2898 -1.7731 18 14 10.5454 5.9821 -2.4082 19 1 10.5058 6.9976 -1.3254 20 1 11.9580 5.6894 -2.7603 21 1 9.8349 6.5045 -3.6031 22 6 3.4455 1.2748 0.5820 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.3896 2.3019 -1.8474 27 1 2.5650 0.9685 -2.0903 28 1 3.0491 3.8117 -1.2178 29 1 4.1306 2.7060 -2.1078 30 1 5.6496 1.4654 -1.0641 31 1 5.9856 1.7566 0.6594 32 1 7.7456 2.4321 -1.7614 33 1 8.2373 2.7951 -0.0897 34 1 11.3210 3.2718 -2.0439 35 1 3.9543 0.3564 0.2892 36 1 3.4165 1.3637 1.6680 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362187524.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:55 Heat of formation + Delta-G solvation = -24.569440 kcal Electronic energy + Delta-G solvation = -16710.413243 eV Core-core repulsion = 14001.438052 eV Total energy + Delta-G solvation = -2708.975190 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.54173 -37.44360 -35.89708 -33.74419 -32.30171 -30.15133 -28.92931 -26.79519 -25.99414 -23.47505 -21.83315 -21.13221 -20.69256 -17.19948 -16.76136 -16.36411 -15.97602 -15.12413 -14.96229 -14.76770 -14.20429 -13.79955 -13.38486 -13.09897 -12.90491 -12.38388 -12.28148 -11.94294 -11.82435 -11.63574 -11.49333 -11.29684 -11.09525 -10.96791 -10.75861 -10.61359 -10.52086 -10.19323 -9.75514 -9.52537 -9.22613 -8.44401 -8.24090 -6.08573 -4.11766 3.31849 3.36202 3.38184 3.40945 3.77118 3.86315 4.16472 4.41740 4.56730 4.60157 4.89877 4.94706 5.06477 5.10529 5.19249 5.29470 5.36283 5.48201 5.53083 5.59201 5.67410 5.77542 5.84763 5.95120 6.00738 6.12258 6.38536 6.49502 6.91338 7.09035 7.13885 7.43254 7.54135 7.86521 8.24239 8.61396 8.92750 9.53564 11.02326 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.046027 B = 0.004616 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.193766 B = 6064.379385 C = 6213.378851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.076 3.924 4 H 0.076 0.924 5 C -0.164 4.164 6 C 0.039 3.961 7 N -0.529 5.529 8 C 0.058 3.942 9 C 0.012 3.988 10 H 0.099 0.901 11 C 0.257 3.743 12 N -0.481 5.481 13 C 0.031 3.969 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.063 3.937 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.049 3.951 23 H 0.040 0.960 24 H 0.084 0.916 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.026 0.974 34 H 0.263 0.737 35 H 0.060 0.940 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.482 -6.904 -0.249 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C 0.018 3.982 4 H 0.094 0.906 5 C -0.202 4.202 6 C -0.089 4.089 7 N -0.255 5.255 8 C -0.071 4.071 9 C -0.010 4.010 10 H 0.117 0.883 11 C -0.060 4.060 12 N -0.158 5.158 13 C -0.008 4.008 14 C -0.565 4.565 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.079 4.079 23 H 0.059 0.941 24 H 0.103 0.897 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.261 -5.665 1.405 18.221 hybrid contribution 0.438 0.149 -1.302 1.381 sum -16.824 -5.516 0.104 17.705 Atomic orbital electron populations 1.22765 0.81083 1.02623 0.99978 1.87888 1.19656 1.27411 1.94925 1.23310 0.94967 0.84331 0.95600 0.90575 1.23268 0.99429 0.99914 0.97616 1.22834 0.95102 0.99172 0.91762 1.63654 1.02976 1.34422 1.24401 1.22441 0.86475 0.96522 1.01676 1.19227 1.01521 0.90055 0.90199 0.88292 1.28845 0.90479 0.92997 0.93646 1.80975 1.11464 1.11032 1.12293 1.19174 0.85837 0.97994 0.97749 1.21105 0.96181 0.94817 1.44379 0.92547 1.24952 0.97336 0.96173 0.95475 1.69932 1.09760 1.25684 1.47672 0.86651 0.78465 0.83636 0.79310 1.20207 1.21197 1.20063 1.22933 0.91929 0.93003 1.00052 0.94089 0.89706 0.94008 0.90900 0.90409 0.90352 0.91251 0.92463 0.90140 0.94475 0.95524 0.92742 0.92181 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.89 101.05 1.10 1.35 16 2 O -0.38 -4.25 10.51 -35.23 -0.37 -4.62 16 3 C 0.08 0.83 3.48 -24.59 -0.09 0.75 16 4 H 0.08 0.78 7.90 -51.93 -0.41 0.37 16 5 C -0.16 -1.69 6.68 -24.91 -0.17 -1.85 16 6 C 0.04 0.47 6.14 -2.84 -0.02 0.45 16 7 N -0.53 -7.35 4.86 -231.25 -1.12 -8.48 16 8 C 0.06 0.88 3.90 -3.82 -0.01 0.87 16 9 C 0.01 0.22 2.18 -93.41 -0.20 0.02 16 10 H 0.10 1.74 7.04 -51.93 -0.37 1.37 16 11 C 0.26 5.47 13.67 -20.76 -0.28 5.19 16 12 N -0.48 -11.09 18.54 42.15 0.78 -10.31 16 13 C 0.03 0.72 4.42 -27.89 -0.12 0.60 16 14 C -0.53 -14.09 8.60 -34.44 -0.30 -14.38 16 15 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 18 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.05 0.60 6.42 -2.30 -0.01 0.58 16 23 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.04 0.29 8.11 -51.93 -0.42 -0.13 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.83 6.94 -51.92 -0.36 0.47 16 30 H 0.06 0.81 7.96 -51.93 -0.41 0.40 16 31 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.06 0.74 7.81 -51.93 -0.41 0.34 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 304.76 15.07 4.59 4.59 Total: -1.00 -30.51 304.76 -6.32 -36.83 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -5.71 Total: -4.69 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -0.20 Total: -4.80 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.39 Total: -43.66 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.37 Total: -4.62 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.51 -6.32 -36.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362187524.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.259 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds