Wall clock time and date at job start Sun Mar 29 2020 23:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.46976 * 2 1 4 4 H 1.08997 * 109.46820 * 174.08806 * 3 2 1 5 5 C 1.50702 * 109.47188 * 54.08909 * 3 2 1 6 6 H 1.07999 * 119.99883 * 240.00530 * 5 3 2 7 7 C 1.37872 * 119.99807 * 59.99682 * 5 3 2 8 8 N 1.31518 * 120.00547 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99681 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47318 * 60.00624 * 9 7 5 11 11 H 1.48504 * 109.47293 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47537 * 300.00451 * 9 7 5 13 13 N 1.46894 * 109.46792 * 294.08593 * 3 2 1 14 14 C 1.46896 * 111.00471 * 275.78731 * 13 3 2 15 15 C 1.50698 * 109.47416 * 176.20235 * 14 13 3 16 16 N 1.30833 * 125.95752 * 269.69160 * 15 14 13 17 17 C 1.33241 * 109.82884 * 179.86611 * 16 15 14 18 18 N 1.30710 * 108.94576 * 0.40195 * 17 16 15 19 19 N 1.34427 * 125.96590 * 90.00108 * 15 14 13 20 20 C 1.46496 * 126.82082 * 359.93668 * 19 15 14 21 21 C 1.53000 * 109.47235 * 90.00536 * 20 19 15 22 22 H 1.09006 * 109.47221 * 178.55647 * 1 2 3 23 23 H 1.09000 * 109.47419 * 58.56248 * 1 2 3 24 24 H 1.09000 * 109.47527 * 298.55485 * 1 2 3 25 25 H 1.09005 * 109.47446 * 119.99810 * 2 1 3 26 26 H 1.09000 * 109.47290 * 239.99979 * 2 1 3 27 27 H 0.96994 * 120.00161 * 179.97438 * 8 7 5 28 28 H 1.00897 * 111.00155 * 39.74470 * 13 3 2 29 29 H 1.09006 * 109.46730 * 296.19734 * 14 13 3 30 30 H 1.08996 * 109.47238 * 56.19197 * 14 13 3 31 31 H 1.08003 * 125.52369 * 180.12108 * 17 16 15 32 32 H 1.09005 * 109.47457 * 210.00361 * 20 19 15 33 33 H 1.08996 * 109.47525 * 330.00518 * 20 19 15 34 34 H 1.09006 * 109.47002 * 59.99560 * 21 20 19 35 35 H 1.08999 * 109.47097 * 179.97438 * 21 20 19 36 36 H 1.08998 * 109.46969 * 299.99964 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1247 1.4444 0.1058 5 6 1.4216 2.1940 1.1508 6 1 0.8147 3.0670 0.9617 7 6 1.6308 1.7667 2.4448 8 7 2.3702 0.7037 2.6751 9 14 0.8650 2.6985 3.8713 10 1 -0.6130 2.6966 3.7274 11 1 1.2391 2.0417 5.1495 12 1 1.3604 4.0984 3.8711 13 7 1.6702 2.0925 -1.2644 14 6 2.6508 1.7937 -2.3165 15 6 2.1910 2.3981 -3.6182 16 7 1.4413 1.8109 -4.5153 17 6 1.2285 2.6382 -5.5379 18 7 1.8497 3.7651 -5.3085 19 7 2.4844 3.6323 -4.0628 20 6 3.3028 4.6391 -3.3825 21 6 4.7655 4.4741 -3.7997 22 1 -0.3634 -1.0274 -0.0259 23 1 -0.3634 0.5360 -0.8768 24 1 -0.3634 0.4912 0.9026 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 2.5176 0.4034 3.5855 28 1 0.7403 1.8248 -1.5502 29 1 3.6180 2.2150 -2.0419 30 1 2.7441 0.7137 -2.4301 31 1 0.6419 2.4123 -6.4162 32 1 2.9566 5.6353 -3.6579 33 1 3.2159 4.5096 -2.3037 34 1 4.8525 4.6036 -4.8785 35 1 5.3744 5.2235 -3.2939 36 1 5.1117 3.4779 -3.5243 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579490505.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:16 Heat of formation + Delta-G solvation = 80.753345 kcal Electronic energy + Delta-G solvation = -17236.849151 eV Core-core repulsion = 14564.733850 eV Total energy + Delta-G solvation = -2672.115301 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.149 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.85049 -36.70019 -34.90827 -33.08981 -31.37237 -30.29828 -29.67349 -26.86987 -24.86735 -23.77527 -23.22575 -21.54681 -20.01574 -19.35517 -17.03647 -16.12246 -15.58440 -15.06869 -14.78971 -14.46523 -14.06128 -13.86842 -13.27351 -12.89521 -12.81546 -12.51001 -12.25784 -11.98331 -11.82728 -11.65072 -11.13912 -10.92342 -10.78351 -10.54891 -10.04898 -9.96240 -9.76353 -9.58522 -9.52270 -9.30222 -9.06080 -8.39454 -7.42218 -6.02819 -4.04905 1.83388 2.51847 3.17227 3.31267 3.36089 3.39217 4.34383 4.43368 4.63840 4.95051 4.98808 5.17756 5.28713 5.29284 5.39014 5.59066 5.70417 5.88682 5.98506 6.03913 6.35027 6.38871 6.50932 6.55790 6.67033 6.91300 7.02875 7.14295 7.22882 7.48498 7.64348 7.80775 8.17319 8.33578 8.39368 8.49562 8.99640 9.58851 11.04218 Molecular weight = 238.15amu Principal moments of inertia in cm(-1) A = 0.029183 B = 0.006338 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.235677 B = 4416.466147 C = 4866.847142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.147 4.147 3 C 0.218 3.782 4 H 0.036 0.964 5 C -0.492 4.492 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.678 5.678 14 C 0.131 3.869 15 C 0.298 3.702 16 N -0.550 5.550 17 C 0.192 3.808 18 N -0.333 5.333 19 N -0.365 5.365 20 C 0.121 3.879 21 C -0.167 4.167 22 H 0.023 0.977 23 H 0.030 0.970 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.014 0.986 27 H 0.261 0.739 28 H 0.336 0.664 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.212 0.788 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.415 3.899 -10.315 11.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.186 4.186 3 C 0.110 3.890 4 H 0.054 0.946 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.311 5.311 14 C -0.001 4.001 15 C 0.021 3.979 16 N -0.278 5.278 17 C -0.111 4.111 18 N -0.162 5.162 19 N -0.156 5.156 20 C -0.001 4.001 21 C -0.226 4.226 22 H 0.042 0.958 23 H 0.049 0.951 24 H 0.084 0.916 25 H 0.112 0.888 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.155 0.845 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.229 0.771 32 H 0.112 0.888 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.709 4.753 -10.418 11.767 hybrid contribution -0.573 -0.469 0.676 1.003 sum 2.135 4.284 -9.742 10.854 Atomic orbital electron populations 1.21557 0.97536 0.98188 1.01240 1.22111 0.95247 1.00807 1.00437 1.19245 0.96269 0.88923 0.84535 0.94611 1.20960 1.30845 1.11680 0.89596 0.92057 1.24885 0.95469 0.95128 0.98658 1.69866 1.38962 1.23991 1.20562 0.86621 0.79679 0.79960 0.81488 1.20357 1.21466 1.20359 1.61032 1.04141 1.63250 1.02713 1.20480 0.97454 0.98205 0.83984 1.24559 0.93290 0.83295 0.96716 1.70503 1.20620 1.33363 1.03330 1.25843 0.98895 0.87603 0.98724 1.77925 1.15891 1.23750 0.98601 1.50346 1.38201 1.12669 1.14368 1.21842 0.89476 0.90879 0.97862 1.22167 0.94815 1.03229 1.02355 0.95763 0.95084 0.91596 0.88813 0.96745 0.92955 0.84497 0.89585 0.92168 0.77146 0.88824 0.86995 0.92081 0.90207 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.39 37.15 0.35 -2.37 16 2 C -0.15 -3.31 5.50 -26.73 -0.15 -3.46 16 3 C 0.22 5.05 2.33 -68.86 -0.16 4.89 16 4 H 0.04 0.90 7.86 -51.93 -0.41 0.49 16 5 C -0.49 -12.70 7.35 -34.44 -0.25 -12.95 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.57 5.22 -17.82 -0.09 1.47 16 8 N -0.89 -24.28 11.39 55.43 0.63 -23.65 16 9 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.68 -13.63 6.24 -109.22 -0.68 -14.31 16 14 C 0.13 2.26 5.60 -4.98 -0.03 2.23 16 15 C 0.30 5.06 7.46 -155.70 -1.16 3.90 16 16 N -0.55 -9.59 11.19 -11.97 -0.13 -9.72 16 17 C 0.19 2.91 13.03 -91.82 -1.20 1.72 16 18 N -0.33 -5.34 12.70 29.29 0.37 -4.97 16 19 N -0.37 -5.70 3.64 -58.34 -0.21 -5.92 16 20 C 0.12 1.50 6.85 -4.04 -0.03 1.47 16 21 C -0.17 -1.70 10.24 37.16 0.38 -1.32 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.03 0.61 6.42 -51.93 -0.33 0.28 16 24 H 0.07 1.53 7.05 -51.93 -0.37 1.16 16 25 H 0.09 2.37 6.25 -51.93 -0.32 2.05 16 26 H 0.01 0.30 7.24 -51.93 -0.38 -0.08 16 27 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.34 6.93 6.55 -39.29 -0.26 6.68 16 29 H 0.09 1.37 7.75 -51.93 -0.40 0.96 16 30 H 0.06 1.06 7.23 -51.93 -0.38 0.69 16 31 H 0.21 2.28 8.06 -52.48 -0.42 1.86 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.11 1.43 7.72 -51.93 -0.40 1.03 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 297.93 15.07 4.49 4.49 Total: -1.00 -28.71 297.93 -8.22 -36.93 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.33 Total: 5.86 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -2.34 Total: -4.41 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.02 Total: -58.57 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.71 -8.22 -36.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579490505.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.687 kcal (2) G-P(sol) polarization free energy of solvation -28.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds