Wall clock time and date at job start Sun Mar 29 2020 23:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47338 * 2 1 4 4 H 1.08997 * 109.46665 * 54.51760 * 3 2 1 5 5 C 1.50696 * 109.47037 * 174.52054 * 3 2 1 6 6 H 1.08008 * 120.00071 * 120.00301 * 5 3 2 7 7 C 1.37880 * 120.00343 * 299.99918 * 5 3 2 8 8 N 1.31515 * 119.99565 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00020 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46935 * 90.00151 * 9 7 5 11 11 H 1.48500 * 109.46809 * 209.99991 * 9 7 5 12 12 H 1.48492 * 109.47339 * 330.00023 * 9 7 5 13 13 N 1.46898 * 109.46914 * 294.52081 * 3 2 1 14 14 C 1.46903 * 110.99903 * 154.44733 * 13 3 2 15 15 C 1.50698 * 109.47277 * 174.77034 * 14 13 3 16 16 N 1.30830 * 125.96501 * 269.69709 * 15 14 13 17 17 C 1.33238 * 109.83066 * 179.86558 * 16 15 14 18 18 N 1.30722 * 108.94477 * 0.39964 * 17 16 15 19 19 N 1.34430 * 125.95764 * 90.00159 * 15 14 13 20 20 C 1.46502 * 126.82275 * 359.94517 * 19 15 14 21 21 C 1.53004 * 109.47037 * 89.99905 * 20 19 15 22 22 H 1.09001 * 109.47766 * 305.93085 * 1 2 3 23 23 H 1.08999 * 109.47199 * 65.92742 * 1 2 3 24 24 H 1.08998 * 109.47278 * 185.92463 * 1 2 3 25 25 H 1.09003 * 109.46807 * 239.99913 * 2 1 3 26 26 H 1.09005 * 109.47071 * 120.00424 * 2 1 3 27 27 H 0.96994 * 119.99864 * 179.97438 * 8 7 5 28 28 H 1.00897 * 111.00390 * 30.49608 * 13 3 2 29 29 H 1.08994 * 109.47461 * 294.78165 * 14 13 3 30 30 H 1.09007 * 109.46425 * 54.77693 * 14 13 3 31 31 H 1.08005 * 125.53164 * 180.12665 * 17 16 15 32 32 H 1.09004 * 109.46979 * 209.99484 * 20 19 15 33 33 H 1.08996 * 109.47364 * 330.00231 * 20 19 15 34 34 H 1.09000 * 109.47430 * 179.97438 * 21 20 19 35 35 H 1.08997 * 109.46895 * 300.00014 * 21 20 19 36 36 H 1.09004 * 109.47360 * 59.99805 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5987 1.9838 0.8368 5 6 3.5408 1.4446 0.1357 6 1 4.1523 1.8870 -0.6369 7 6 4.1335 0.8818 1.2461 8 7 3.3890 0.3426 2.1866 9 14 5.9939 0.8850 1.4145 10 1 6.4250 2.1199 2.1176 11 1 6.4223 -0.3039 2.1944 12 1 6.6131 0.8416 0.0656 13 7 1.6613 2.0957 -1.2601 14 6 1.5684 3.5520 -1.0909 15 6 1.3053 4.1972 -2.4272 16 7 2.2138 4.6167 -3.2700 17 6 1.6259 5.1304 -4.3497 18 7 0.3291 5.0522 -4.2044 19 7 0.0961 4.4473 -2.9586 20 6 -1.2060 4.1476 -2.3578 21 6 -1.6676 5.3411 -1.5191 22 1 -0.3635 0.6030 0.8321 23 1 -0.3633 0.4192 -0.9383 24 1 -0.3634 -1.0221 0.1061 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8059 -0.0537 2.9676 28 1 0.7971 1.7175 -1.6180 29 1 0.7530 3.7871 -0.4070 30 1 2.5055 3.9308 -0.6828 31 1 2.1376 5.5480 -5.2042 32 1 -1.9338 3.9542 -3.1459 33 1 -1.1182 3.2679 -1.7203 34 1 -2.6366 5.1184 -1.0725 35 1 -0.9397 5.5346 -0.7311 36 1 -1.7553 6.2210 -2.1566 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579490506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:18 Heat of formation + Delta-G solvation = 63.104614 kcal Electronic energy + Delta-G solvation = -17228.979096 eV Core-core repulsion = 14556.098489 eV Total energy + Delta-G solvation = -2672.880607 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.06653 -38.28714 -36.03277 -34.71672 -33.37981 -31.77217 -30.96179 -28.76662 -26.68633 -24.96928 -24.26084 -22.71847 -21.58890 -21.09862 -18.38891 -17.95735 -17.02004 -16.68942 -16.41127 -16.02973 -15.62099 -15.00485 -14.86499 -14.25993 -14.04871 -13.97197 -13.77215 -13.29667 -13.15542 -13.06713 -12.74057 -12.69760 -12.53608 -12.12759 -11.95174 -11.61662 -11.47977 -11.07692 -10.95243 -10.72997 -10.50229 -10.40999 -9.12303 -8.05667 -6.15951 0.57548 1.36285 1.43259 1.45319 1.55912 1.97643 2.47014 3.12447 3.21408 3.51565 3.69012 3.93253 4.03366 4.08315 4.28606 4.46566 4.52088 4.58748 4.63557 4.73391 4.78682 4.82106 5.09570 5.14394 5.23668 5.36798 5.37975 5.52362 5.57202 5.76248 5.85066 5.88940 6.31210 6.43622 6.86701 6.96194 7.17741 7.52678 8.97386 Molecular weight = 238.15amu Principal moments of inertia in cm(-1) A = 0.026058 B = 0.006769 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.274169 B = 4135.497102 C = 4804.964802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.230 3.770 4 H -0.013 1.013 5 C -0.514 4.514 6 H 0.046 0.954 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.680 5.680 14 C 0.151 3.849 15 C 0.289 3.711 16 N -0.567 5.567 17 C 0.190 3.810 18 N -0.341 5.341 19 N -0.372 5.372 20 C 0.112 3.888 21 C -0.162 4.162 22 H 0.045 0.955 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.032 0.968 26 H 0.071 0.929 27 H 0.261 0.739 28 H 0.329 0.671 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.246 0.754 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.052 0.948 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.920 6.492 -6.240 14.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C 0.123 3.877 4 H 0.004 0.996 5 C -0.553 4.553 6 H 0.064 0.936 7 C -0.183 4.183 8 N -0.556 5.556 9 Si 0.776 3.224 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.202 1.202 13 N -0.314 5.314 14 C 0.019 3.981 15 C 0.012 3.988 16 N -0.295 5.295 17 C -0.113 4.113 18 N -0.170 5.170 19 N -0.164 5.164 20 C -0.008 4.008 21 C -0.220 4.220 22 H 0.064 0.936 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.148 0.852 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.262 0.738 32 H 0.132 0.868 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.071 0.929 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.526 6.643 -6.748 14.159 hybrid contribution 0.412 -0.084 0.836 0.936 sum -10.114 6.559 -5.912 13.426 Atomic orbital electron populations 1.21756 0.95836 1.01406 1.00690 1.21607 0.94587 0.98613 1.01297 1.18948 0.94033 0.90808 0.83926 0.99568 1.21469 0.92981 1.36674 1.04156 0.93574 1.25552 1.01786 0.95294 0.95618 1.69960 1.36016 1.39763 1.09853 0.85692 0.81425 0.77524 0.77790 1.20311 1.20754 1.20182 1.60421 1.37223 1.01223 1.32486 1.20193 1.02363 0.89154 0.86414 1.24363 0.81775 0.95591 0.97111 1.70497 1.34203 1.20552 1.04296 1.26593 0.88458 0.97959 0.98261 1.77875 1.18735 1.21124 0.99251 1.50708 1.07860 1.44438 1.13395 1.22142 0.80209 1.00144 0.98352 1.22142 1.03312 0.97054 0.99492 0.93578 0.92453 0.92537 0.94888 0.91039 0.92983 0.85182 0.91893 0.89669 0.73804 0.86843 0.87677 0.87360 0.92853 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 9.64 71.98 0.69 -3.97 16 2 C -0.12 -5.45 5.36 30.59 0.16 -5.28 16 3 C 0.23 10.91 2.02 44.17 0.09 11.00 16 4 H -0.01 -0.67 7.85 -2.39 -0.02 -0.69 16 5 C -0.51 -28.19 8.57 25.60 0.22 -27.97 16 6 H 0.05 2.66 7.81 -2.91 -0.02 2.63 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.92 -50.98 11.29 21.45 0.24 -50.74 16 9 Si 0.95 44.15 29.54 68.60 2.03 46.18 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 N -0.68 -27.43 6.26 -499.47 -3.12 -30.56 16 14 C 0.15 5.47 5.57 85.56 0.48 5.94 16 15 C 0.29 9.97 7.54 138.23 1.04 11.01 16 16 N -0.57 -20.99 11.19 -191.77 -2.15 -23.13 16 17 C 0.19 5.73 13.03 180.76 2.36 8.08 16 18 N -0.34 -10.38 12.70 -61.24 -0.78 -11.16 16 19 N -0.37 -10.78 3.64 -338.48 -1.23 -12.01 16 20 C 0.11 2.22 6.85 86.38 0.59 2.82 16 21 C -0.16 -2.69 10.24 71.98 0.74 -1.95 16 22 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.06 1.63 6.65 -2.39 -0.02 1.61 16 24 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.07 3.66 5.94 -2.38 -0.01 3.64 16 27 H 0.26 13.91 8.31 -92.71 -0.77 13.13 16 28 H 0.33 11.60 6.63 -89.70 -0.60 11.00 16 29 H 0.06 1.96 7.76 -2.39 -0.02 1.94 16 30 H 0.08 3.55 7.94 -2.38 -0.02 3.53 16 31 H 0.25 5.14 8.06 -2.91 -0.02 5.12 16 32 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.11 1.89 7.72 -2.39 -0.02 1.87 16 34 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -65.42 301.70 2.27 -63.14 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.47 Total: 17.29 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 6.82 Total: 0.99 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -7.04 Total: -127.61 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -65.42 2.27 -63.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579490506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.246 kcal (2) G-P(sol) polarization free energy of solvation -65.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds