Wall clock time and date at job start Sun Mar 29 2020 22:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47020 * 2 1 4 4 C 1.47197 * 109.47073 * 119.99869 * 2 1 3 5 5 N 2.60805 * 109.47128 * 119.99798 * 2 1 3 6 6 N 1.46900 * 109.47259 * 239.99865 * 2 1 3 7 7 C 1.46899 * 110.99757 * 69.81115 * 6 2 1 8 8 C 1.52998 * 109.47199 * 162.93764 * 7 6 2 9 9 O 1.42898 * 109.47376 * 70.48648 * 8 7 6 10 10 C 1.42900 * 113.99706 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.46838 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99698 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00247 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99768 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00493 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47038 * 90.00004 * 15 13 11 17 17 H 1.48500 * 109.47642 * 210.00568 * 15 13 11 18 18 H 1.48509 * 109.46920 * 330.00537 * 15 13 11 19 19 C 1.46892 * 111.00204 * 305.85694 * 6 2 1 20 20 C 1.52999 * 117.49778 * 276.58075 * 19 6 2 21 21 C 1.52992 * 60.00156 * 252.50890 * 20 19 6 22 22 H 1.08995 * 109.46925 * 305.37826 * 1 2 3 23 23 H 1.09001 * 109.46760 * 65.37951 * 1 2 3 24 24 H 1.08999 * 109.46956 * 185.37731 * 1 2 3 25 25 H 1.09008 * 109.47001 * 282.93483 * 7 6 2 26 26 H 1.09000 * 109.47366 * 42.93015 * 7 6 2 27 27 H 1.09002 * 109.47040 * 190.49041 * 8 7 6 28 28 H 1.09003 * 109.46961 * 310.48430 * 8 7 6 29 29 H 1.08996 * 109.47287 * 300.00182 * 10 9 8 30 30 H 1.08996 * 109.47114 * 60.00602 * 10 9 8 31 31 H 0.97005 * 120.00387 * 179.97438 * 14 13 11 32 32 H 1.09001 * 115.55432 * 62.28370 * 19 6 2 33 33 H 1.09004 * 117.49701 * 0.02562 * 20 19 6 34 34 H 1.09003 * 117.50073 * 145.01852 * 20 19 6 35 35 H 1.09001 * 117.49962 * 252.51135 * 21 20 19 36 36 H 1.09006 * 117.50057 * 107.48854 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3994 -1.2294 2.1295 6 7 2.0197 -0.6925 -1.1994 7 6 1.7490 0.0952 -2.4094 8 6 2.6194 -0.4188 -3.5579 9 8 2.1541 -1.7057 -3.9693 10 6 2.9026 -2.2783 -5.0435 11 6 2.3284 -3.6271 -5.3929 12 1 1.4768 -4.0086 -4.8493 13 6 2.8895 -4.3735 -6.4072 14 7 3.9263 -3.9087 -7.0695 15 14 2.1774 -6.0451 -6.8408 16 1 1.1275 -5.8818 -7.8782 17 1 3.2560 -6.9228 -7.3619 18 1 1.5823 -6.6596 -5.6268 19 6 1.4379 -2.0371 -1.3054 20 6 2.1091 -3.1617 -0.5143 21 6 2.2546 -3.1047 -2.0363 22 1 -0.3633 0.5950 0.8379 23 1 -0.3633 0.4281 -0.9343 24 1 -0.3633 -1.0231 0.0963 25 1 0.6972 -0.0026 -2.6788 26 1 1.9794 1.1435 -2.2197 27 1 2.5601 0.2744 -4.3971 28 1 3.6539 -0.4963 -3.2232 29 1 2.8488 -1.6236 -5.9133 30 1 3.9430 -2.3944 -4.7400 31 1 4.3214 -4.4339 -7.7829 32 1 0.3536 -2.0733 -1.4107 33 1 2.9822 -2.9036 0.0851 34 1 1.4663 -3.9378 -0.0989 35 1 1.7075 -3.8434 -2.6221 36 1 3.2237 -2.8093 -2.4385 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595709892.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:31 Heat of formation + Delta-G solvation = 18.240515 kcal Electronic energy + Delta-G solvation = -17359.878730 eV Core-core repulsion = 14652.759919 eV Total energy + Delta-G solvation = -2707.118812 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.27159 -36.72985 -35.79645 -34.54286 -32.76039 -31.10067 -27.94327 -26.63679 -24.46812 -22.53125 -22.12253 -21.57154 -19.89925 -17.57193 -16.38909 -16.00166 -15.60127 -15.30242 -14.79754 -14.52477 -14.19154 -13.78514 -13.56736 -13.01639 -12.65540 -12.58564 -12.35034 -11.95939 -11.89751 -11.63466 -11.24956 -11.12698 -10.87076 -10.74631 -10.74131 -10.52659 -10.08870 -9.77104 -9.51530 -9.06439 -8.73463 -8.33565 -8.06866 -6.10766 -4.11960 2.68103 2.84641 3.29384 3.35413 3.39257 3.84894 4.07670 4.32141 4.39141 4.84256 4.88082 4.93199 5.26281 5.29641 5.41251 5.44750 5.50858 5.64355 5.67487 5.79284 5.88260 6.01963 6.12282 6.16403 6.21664 6.36153 6.90648 6.96578 7.01657 7.13912 7.30327 7.45176 7.62850 7.79539 8.16441 8.59373 9.01275 9.53036 11.00694 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036253 B = 0.005950 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.170040 B = 4704.620695 C = 5074.469810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.176 3.824 3 H 0.120 0.880 4 C 0.228 3.772 5 N -0.435 5.435 6 N -0.500 5.500 7 C 0.065 3.935 8 C 0.064 3.936 9 O -0.383 6.383 10 C 0.196 3.804 11 C -0.508 4.508 12 H 0.066 0.934 13 C 0.057 3.943 14 N -0.898 5.898 15 Si 0.903 3.097 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 C -0.001 4.001 20 C -0.199 4.199 21 C -0.087 4.087 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.082 0.918 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.001 0.999 30 H 0.004 0.996 31 H 0.263 0.737 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.955 9.084 10.119 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.065 3.935 3 H 0.138 0.862 4 C -0.091 4.091 5 N -0.112 5.112 6 N -0.226 5.226 7 C -0.062 4.062 8 C -0.014 4.014 9 O -0.303 6.303 10 C 0.121 3.879 11 C -0.546 4.546 12 H 0.084 0.916 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.730 3.270 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.109 4.109 20 C -0.237 4.237 21 C -0.125 4.125 22 H 0.085 0.915 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.018 0.982 30 H 0.022 0.978 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.896 8.091 11.483 14.875 hybrid contribution -1.007 -0.387 -0.960 1.444 sum -5.903 7.703 10.523 14.315 Atomic orbital electron populations 1.22412 0.94451 1.03723 1.03498 1.19145 0.93770 0.96704 0.83885 0.86236 1.28867 0.92976 0.93331 0.93962 1.81152 1.08820 1.08582 1.12613 1.61960 1.57716 1.02159 1.00718 1.22156 0.99472 0.95912 0.88640 1.22220 0.97112 0.87856 0.94205 1.87989 1.58149 1.29770 1.54351 1.20120 0.91099 0.93098 0.83557 1.21003 1.15251 1.01220 1.17132 0.91617 1.24926 0.95024 0.98558 0.95945 1.69957 1.22535 1.38331 1.22910 0.86416 0.78573 0.83235 0.78728 1.20623 1.21193 1.19669 1.22285 0.95349 0.84707 1.08551 1.23213 1.02795 0.99853 0.97842 1.22871 1.02071 0.97532 0.89995 0.91466 0.90392 0.91250 0.93123 0.89952 0.94064 0.93637 0.98163 0.97842 0.92738 0.89678 0.89543 0.89897 0.88133 0.87822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 8.43 37.16 0.31 -1.21 16 2 C 0.18 1.79 2.77 -70.50 -0.20 1.59 16 3 H 0.12 0.88 7.86 -51.93 -0.41 0.47 16 4 C 0.23 2.95 12.70 -20.76 -0.26 2.68 16 5 N -0.44 -6.68 18.46 42.16 0.78 -5.90 16 6 N -0.50 -6.56 4.51 -222.08 -1.00 -7.56 16 7 C 0.07 0.81 4.90 -3.83 -0.02 0.79 16 8 C 0.06 1.06 5.83 37.16 0.22 1.27 16 9 O -0.38 -8.02 5.86 -35.23 -0.21 -8.22 16 10 C 0.20 4.95 5.21 36.01 0.19 5.14 16 11 C -0.51 -13.89 9.27 -34.44 -0.32 -14.21 16 12 H 0.07 1.77 7.26 -52.49 -0.38 1.39 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 15 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 C 0.00 -0.01 3.34 -67.72 -0.23 -0.24 16 20 C -0.20 -3.15 9.27 -26.74 -0.25 -3.40 16 21 C -0.09 -1.58 7.28 -26.74 -0.19 -1.78 16 22 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.08 0.60 6.86 -51.93 -0.36 0.24 16 24 H 0.07 0.67 6.74 -51.93 -0.35 0.32 16 25 H 0.05 0.63 7.21 -51.92 -0.37 0.25 16 26 H 0.08 0.75 7.79 -51.93 -0.40 0.35 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 30 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.09 1.24 6.87 -51.93 -0.36 0.89 16 33 H 0.09 1.45 7.49 -51.93 -0.39 1.06 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.10 2.00 7.43 -51.93 -0.39 1.61 16 36 H 0.10 2.13 6.75 -51.93 -0.35 1.78 16 LS Contribution 296.84 15.07 4.47 4.47 Total: -1.00 -30.08 296.84 -6.51 -36.60 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -5.43 Total: -2.31 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -0.85 Total: -7.89 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.51 Total: -38.89 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.21 Total: -8.22 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.08 -6.51 -36.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595709892.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.838 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds