Wall clock time and date at job start Sun Mar 29 2020 23:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 N 1.28710 * 125.86851 * 269.69582 * 3 2 1 5 5 N 1.28632 * 110.18067 * 179.81679 * 4 3 2 6 6 C 1.33775 * 108.88075 * 0.44712 * 5 4 3 7 7 C 1.50698 * 126.74932 * 179.71382 * 6 5 4 8 8 C 1.35313 * 125.86644 * 89.99944 * 3 2 1 9 9 C 1.50698 * 126.91250 * 0.02562 * 8 3 2 10 10 N 1.46898 * 109.47055 * 90.00114 * 9 8 3 11 11 C 1.46905 * 110.99883 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.46678 * 324.99540 * 11 10 9 13 13 C 1.52999 * 109.47415 * 84.99671 * 11 10 9 14 14 C 1.50701 * 109.47066 * 204.99897 * 11 10 9 15 15 H 1.08002 * 119.99658 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00030 * 179.97438 * 14 11 10 17 17 N 1.31521 * 120.00311 * 179.97438 * 16 14 11 18 18 Si 1.86803 * 120.00020 * 0.02562 * 16 14 11 19 19 H 1.48504 * 109.47010 * 90.00136 * 18 16 14 20 20 H 1.48497 * 109.47036 * 209.99300 * 18 16 14 21 21 H 1.48491 * 109.47155 * 329.99978 * 18 16 14 22 22 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 23 23 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 26 26 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 27 27 H 1.08995 * 109.47401 * 270.02000 * 7 6 5 28 28 H 1.09003 * 109.47427 * 30.02333 * 7 6 5 29 29 H 1.08998 * 109.47066 * 150.02181 * 7 6 5 30 30 H 1.09006 * 109.46977 * 209.99783 * 9 8 3 31 31 H 1.08996 * 109.47588 * 329.99723 * 9 8 3 32 32 H 1.00899 * 111.00046 * 56.04527 * 10 9 8 33 33 H 1.08997 * 109.46863 * 300.00288 * 13 11 10 34 34 H 1.09006 * 109.46632 * 59.99993 * 13 11 10 35 35 H 1.08999 * 109.47383 * 180.02562 * 13 11 10 36 36 H 0.96999 * 120.00175 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2750 2.0904 -1.0430 5 7 2.6824 3.2599 -0.6952 6 6 2.7074 3.3301 0.6405 7 6 3.1264 4.5140 1.4734 8 6 2.2826 2.1287 1.0966 9 6 2.1344 1.7079 2.5360 10 7 3.3922 1.1100 3.0033 11 6 3.2845 0.6863 4.4058 12 1 2.6496 1.3863 4.9490 13 6 2.6713 -0.7140 4.4700 14 6 4.6558 0.6633 5.0303 15 1 5.5207 0.9365 4.4441 16 6 4.8061 0.2945 6.3503 17 7 6.0029 0.2739 6.8952 18 14 3.3099 -0.1774 7.3644 19 1 3.0697 -1.6378 7.2422 20 1 3.5487 0.1674 8.7889 21 1 2.1221 0.5629 6.8682 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 4.1962 4.4568 1.6739 28 1 2.9068 5.4347 0.9328 29 1 2.5792 4.5069 2.4161 30 1 1.8973 2.5792 3.1467 31 1 1.3310 0.9761 2.6198 32 1 4.1645 1.7466 2.8758 33 1 1.6794 -0.6973 4.0183 34 1 3.3063 -1.4139 3.9267 35 1 2.5909 -1.0281 5.5107 36 1 6.1086 0.0141 7.8238 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601229705.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:29 Heat of formation + Delta-G solvation = 69.595104 kcal Electronic energy + Delta-G solvation = -17294.946074 eV Core-core repulsion = 14622.346916 eV Total energy + Delta-G solvation = -2672.599158 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.149 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.27185 -38.10484 -36.51425 -35.00144 -33.61176 -32.06410 -30.85579 -28.67379 -27.25042 -26.08618 -25.12247 -22.16609 -21.80040 -21.52766 -18.94410 -18.01819 -17.48786 -17.03673 -15.95410 -15.62577 -15.52573 -15.34295 -14.82803 -14.47113 -14.23869 -13.97819 -13.74028 -13.48285 -13.32919 -13.17197 -12.88257 -12.72017 -12.65545 -12.53861 -12.24428 -12.04768 -11.64183 -11.42881 -11.09211 -10.92067 -10.76158 -9.96537 -9.23595 -8.28984 -6.34587 0.57141 1.34475 1.38861 1.45658 1.49567 1.51491 2.33188 3.06848 3.31890 3.47883 3.67399 3.86318 3.94414 3.98918 4.24285 4.31591 4.47608 4.57794 4.70172 4.74513 4.75097 4.80985 4.83135 4.89633 4.94513 5.03539 5.11301 5.14880 5.37864 5.50219 5.64741 5.69589 5.94998 6.43194 6.59500 6.78165 7.32031 7.50355 8.87559 Molecular weight = 238.15amu Principal moments of inertia in cm(-1) A = 0.029858 B = 0.006636 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.535787 B = 4218.209490 C = 4781.605288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 N -0.270 5.270 4 N -0.114 5.114 5 N -0.305 5.305 6 C -0.033 4.033 7 C -0.066 4.066 8 C -0.004 4.004 9 C 0.132 3.868 10 N -0.676 5.676 11 C 0.189 3.811 12 H 0.008 0.992 13 C -0.137 4.137 14 C -0.525 4.525 15 H 0.037 0.963 16 C 0.013 3.987 17 N -0.948 5.948 18 Si 0.954 3.046 19 H -0.267 1.267 20 H -0.303 1.303 21 H -0.241 1.241 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.112 0.888 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.338 0.662 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.031 0.969 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.060 0.381 -9.106 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.065 5.065 4 N -0.092 5.092 5 N -0.171 5.171 6 C -0.173 4.173 7 C -0.124 4.124 8 C -0.138 4.138 9 C 0.002 3.998 10 N -0.308 5.308 11 C 0.079 3.921 12 H 0.026 0.974 13 C -0.194 4.194 14 C -0.563 4.563 15 H 0.055 0.945 16 C -0.185 4.185 17 N -0.588 5.588 18 Si 0.780 3.220 19 H -0.193 1.193 20 H -0.231 1.231 21 H -0.165 1.165 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.130 0.870 25 H 0.134 0.866 26 H 0.135 0.865 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.156 0.844 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.119 -0.284 -10.800 17.778 hybrid contribution 0.203 0.411 2.079 2.129 sum -13.916 0.127 -8.720 16.423 Atomic orbital electron populations 1.22129 0.91424 1.05399 1.02809 1.22503 0.97404 0.75218 1.07130 1.47552 1.41151 1.14088 1.03686 1.78106 1.18702 0.99424 1.12986 1.74946 1.17783 1.11276 1.13076 1.22294 1.05920 0.97854 0.91245 1.20156 1.02036 0.92599 0.97647 1.22033 1.07169 0.92366 0.92191 1.20424 0.94389 0.99354 0.85681 1.60548 1.04201 1.44593 1.21459 1.19394 0.94331 0.93373 0.84954 0.97406 1.22015 0.99981 0.98340 0.99109 1.21381 0.93201 1.45549 0.96215 0.94514 1.25828 0.98705 0.94943 0.98985 1.70050 1.24536 1.49981 1.14260 0.85786 0.80419 0.79305 0.76445 1.19321 1.23070 1.16509 0.91920 0.92287 0.86981 0.86600 0.86547 0.90583 0.89794 0.89504 0.91707 0.88495 0.84448 0.91635 0.93070 0.95054 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 10.24 71.98 0.74 -1.53 16 2 C 0.10 1.86 6.75 86.38 0.58 2.44 16 3 N -0.27 -7.50 3.34 -334.39 -1.12 -8.62 16 4 N -0.11 -3.76 13.16 37.02 0.49 -3.27 16 5 N -0.31 -10.62 12.41 -48.60 -0.60 -11.22 16 6 C -0.03 -1.03 7.25 41.59 0.30 -0.73 16 7 C -0.07 -1.61 10.27 71.24 0.73 -0.88 16 8 C 0.00 -0.12 6.51 41.35 0.27 0.15 16 9 C 0.13 3.67 5.37 85.56 0.46 4.13 16 10 N -0.68 -24.10 6.29 -499.45 -3.14 -27.25 16 11 C 0.19 7.83 2.19 44.17 0.10 7.92 16 12 H 0.01 0.34 6.86 -2.39 -0.02 0.33 16 13 C -0.14 -5.08 8.89 71.98 0.64 -4.44 16 14 C -0.53 -28.12 9.17 25.60 0.23 -27.89 16 15 H 0.04 2.22 7.86 -2.91 -0.02 2.20 16 16 C 0.01 0.73 5.45 84.65 0.46 1.19 16 17 N -0.95 -57.47 13.96 21.45 0.30 -57.17 16 18 Si 0.95 42.16 24.37 68.60 1.67 43.83 16 19 H -0.27 -11.27 6.87 99.48 0.68 -10.59 16 20 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 21 H -0.24 -9.55 6.53 99.48 0.65 -8.90 16 22 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.12 2.20 7.72 -2.38 -0.02 2.18 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.09 1.86 7.31 -2.39 -0.02 1.84 16 30 H 0.07 1.70 7.23 -2.38 -0.02 1.69 16 31 H 0.10 2.31 7.10 -2.39 -0.02 2.30 16 32 H 0.34 13.04 8.22 -89.69 -0.74 12.30 16 33 H 0.06 1.90 7.45 -2.39 -0.02 1.88 16 34 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.03 1.21 3.27 -2.39 -0.01 1.21 16 36 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -67.47 294.45 2.37 -65.10 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.26 Total: 18.23 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 4.51 Total: -19.64 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -4.07 Total: -107.52 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.67 Total: 43.83 kcal Total: -67.47 2.37 -65.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601229705.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.694 kcal (2) G-P(sol) polarization free energy of solvation -67.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds