Wall clock time and date at job start Sun Mar 29 2020 23:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47287 * 2 1 4 4 N 1.46502 * 109.47025 * 179.97438 * 3 2 1 5 5 N 1.40444 * 126.82701 * 270.16952 * 4 3 2 6 6 C 1.30711 * 106.79452 * 180.25918 * 5 4 3 7 7 N 1.33241 * 108.94609 * 359.75174 * 6 5 4 8 8 C 1.30834 * 109.83154 * 359.97438 * 7 6 5 9 9 C 1.50697 * 125.96668 * 179.97438 * 8 7 6 10 10 N 1.46897 * 109.46908 * 90.02606 * 9 8 7 11 11 C 1.46906 * 111.00172 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.46389 * 324.99645 * 11 10 9 13 13 C 1.52997 * 109.47302 * 84.99810 * 11 10 9 14 14 C 1.50697 * 109.47180 * 205.00376 * 11 10 9 15 15 H 1.07998 * 120.00039 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99815 * 179.97438 * 14 11 10 17 17 N 1.31508 * 119.99915 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99777 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.47155 * 89.99872 * 18 16 14 20 20 H 1.48499 * 109.47102 * 210.00327 * 18 16 14 21 21 H 1.48499 * 109.46909 * 330.00049 * 18 16 14 22 22 H 1.09002 * 109.47460 * 300.00779 * 1 2 3 23 23 H 1.09006 * 109.46835 * 60.00119 * 1 2 3 24 24 H 1.08994 * 109.47790 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47286 * 239.99573 * 2 1 3 26 26 H 1.09006 * 109.46835 * 119.99881 * 2 1 3 27 27 H 1.09001 * 109.47246 * 59.99987 * 3 2 1 28 28 H 1.08997 * 109.47314 * 299.99855 * 3 2 1 29 29 H 1.07995 * 125.52917 * 179.72136 * 6 5 4 30 30 H 1.09005 * 109.46789 * 330.03010 * 9 8 7 31 31 H 1.09001 * 109.47726 * 210.02800 * 9 8 7 32 32 H 1.00899 * 111.00259 * 303.95552 * 10 9 8 33 33 H 1.09002 * 109.47153 * 180.02562 * 13 11 10 34 34 H 1.09001 * 109.46832 * 60.00356 * 13 11 10 35 35 H 1.09004 * 109.47261 * 300.00337 * 13 11 10 36 36 H 0.97001 * 119.99839 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 7 4.3464 1.4391 1.1251 6 6 5.5746 1.4460 0.6779 7 7 5.5499 1.4478 -0.6542 8 6 4.3112 1.4416 -1.0752 9 6 3.8657 1.4418 -2.5148 10 7 3.7281 0.0569 -2.9850 11 6 3.2947 0.0178 -4.3881 12 1 2.6135 0.8465 -4.5810 13 6 4.5155 0.1376 -5.3025 14 6 2.5895 -1.2859 -4.6599 15 1 2.4751 -2.0130 -3.8695 16 6 2.0904 -1.5506 -5.9176 17 7 2.2293 -0.6650 -6.8799 18 14 1.2168 -3.1670 -6.2547 19 1 -0.2347 -3.0113 -5.9827 20 1 1.4159 -3.5504 -7.6755 21 1 1.7748 -4.2243 -5.3738 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8901 27 1 1.6767 1.9563 0.8900 28 1 1.6768 1.9563 -0.8900 29 1 6.4650 1.4501 1.2891 30 1 4.6058 1.9605 -3.1241 31 1 2.9054 1.9508 -2.5980 32 1 4.5882 -0.4552 -2.8581 33 1 4.1939 0.1091 -6.3436 34 1 5.1968 -0.6911 -5.1095 35 1 5.0256 1.0807 -5.1059 36 1 1.8778 -0.8511 -7.7646 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602871289.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:57 Heat of formation + Delta-G solvation = 77.431065 kcal Electronic energy + Delta-G solvation = -17159.772023 eV Core-core repulsion = 14487.512658 eV Total energy + Delta-G solvation = -2672.259366 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.149 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.84414 -36.27167 -35.50358 -32.93828 -31.80181 -31.11954 -28.57490 -26.51074 -25.27230 -24.60303 -22.24227 -21.35250 -20.31482 -19.92986 -17.07690 -16.21349 -15.57221 -15.23309 -14.79435 -14.46300 -14.11295 -13.91019 -13.38720 -13.23053 -12.58967 -12.46190 -12.05436 -11.75402 -11.60643 -11.50478 -11.33854 -10.97645 -10.82600 -10.61190 -10.60698 -10.19321 -10.02664 -9.75490 -9.46622 -9.29715 -9.09400 -8.41777 -7.44393 -6.04433 -4.08012 1.84097 2.53179 3.18003 3.29153 3.36064 3.40157 4.34118 4.42909 4.63517 4.92374 5.02553 5.16904 5.27634 5.28532 5.35191 5.51778 5.52083 5.75981 5.93573 5.95527 6.10547 6.25675 6.41172 6.56185 6.63802 6.68087 6.81064 7.00924 7.04587 7.21767 7.68649 7.79116 8.15362 8.33882 8.39435 8.48169 8.98495 9.57510 11.02578 Molecular weight = 238.15amu Principal moments of inertia in cm(-1) A = 0.024563 B = 0.006840 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.631748 B = 4092.495749 C = 4887.622190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.143 4.143 3 C 0.133 3.867 4 N -0.366 5.366 5 N -0.333 5.333 6 C 0.192 3.808 7 N -0.550 5.550 8 C 0.299 3.701 9 C 0.132 3.868 10 N -0.676 5.676 11 C 0.214 3.786 12 H 0.036 0.964 13 C -0.171 4.171 14 C -0.496 4.496 15 H 0.063 0.937 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.275 1.275 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.212 0.788 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.335 0.665 33 H 0.090 0.910 34 H 0.030 0.970 35 H 0.008 0.992 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.315 4.526 11.057 11.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C 0.011 3.989 4 N -0.156 5.156 5 N -0.161 5.161 6 C -0.111 4.111 7 N -0.279 5.279 8 C 0.022 3.978 9 C 0.000 4.000 10 N -0.307 5.307 11 C 0.107 3.893 12 H 0.054 0.946 13 C -0.230 4.230 14 C -0.535 4.535 15 H 0.081 0.919 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.725 3.275 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.199 1.199 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.228 0.772 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.152 0.848 33 H 0.109 0.891 34 H 0.049 0.951 35 H 0.027 0.973 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.004 4.495 11.674 12.550 hybrid contribution 0.301 -0.585 -0.770 1.013 sum -0.703 3.910 10.904 11.605 Atomic orbital electron populations 1.21651 0.94509 1.02466 1.01682 1.21941 0.96540 0.95163 1.04463 1.21856 0.73504 0.99510 1.04010 1.50353 1.07750 1.53768 1.03698 1.77932 1.02095 1.27174 1.08914 1.25837 0.95666 0.98903 0.90682 1.70495 1.20008 1.26044 1.11319 1.24553 0.85769 0.94460 0.93038 1.20438 1.00528 0.95004 0.84021 1.60936 1.36592 1.07942 1.25267 1.19209 0.92469 0.98003 0.79619 0.94618 1.22443 0.98383 0.96300 1.05908 1.21086 1.34923 1.01949 0.95500 0.91920 1.24926 0.96336 0.96972 0.96123 1.69875 1.46459 1.34729 1.02480 0.86513 0.79856 0.83817 0.77291 1.20756 1.21376 1.19948 0.93115 0.91986 0.92000 0.88651 0.91861 0.89304 0.88439 0.77159 0.92248 0.89614 0.84812 0.89134 0.95107 0.97328 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 2 C -0.14 -1.89 6.26 -26.73 -0.17 -2.06 16 3 C 0.13 1.70 6.30 -4.04 -0.03 1.68 16 4 N -0.37 -5.75 3.64 -58.34 -0.21 -5.97 16 5 N -0.33 -5.36 12.70 29.29 0.37 -4.99 16 6 C 0.19 2.91 13.03 -91.82 -1.20 1.71 16 7 N -0.55 -9.55 11.19 -11.97 -0.13 -9.69 16 8 C 0.30 5.06 7.50 -155.69 -1.17 3.90 16 9 C 0.13 2.27 5.81 -4.98 -0.03 2.24 16 10 N -0.68 -13.49 6.22 -109.22 -0.68 -14.16 16 11 C 0.21 5.03 2.57 -68.86 -0.18 4.85 16 12 H 0.04 0.90 7.80 -51.93 -0.40 0.50 16 13 C -0.17 -3.95 8.94 37.16 0.33 -3.62 16 14 C -0.50 -13.02 8.84 -34.44 -0.30 -13.33 16 15 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 16 C 0.06 1.53 5.30 -17.82 -0.09 1.43 16 17 N -0.90 -24.67 11.32 55.43 0.63 -24.05 16 18 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.10 1.14 7.10 -51.93 -0.37 0.77 16 29 H 0.21 2.28 8.06 -52.49 -0.42 1.86 16 30 H 0.06 1.03 7.44 -51.93 -0.39 0.65 16 31 H 0.09 1.37 7.03 -51.93 -0.37 1.00 16 32 H 0.33 6.83 8.46 -39.29 -0.33 6.50 16 33 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 34 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 35 H 0.01 0.16 7.45 -51.93 -0.39 -0.22 16 36 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 302.90 15.07 4.56 4.56 Total: -1.00 -28.93 302.90 -8.43 -37.36 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.49 Total: 5.52 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -2.46 Total: -4.43 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.03 Total: -58.85 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.93 -8.43 -37.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602871289.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.794 kcal (2) G-P(sol) polarization free energy of solvation -28.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds