Wall clock time and date at job start Sun Mar 29 2020 23:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46934 * 2 1 4 4 H 1.09003 * 109.46920 * 54.99832 * 3 2 1 5 5 C 1.52998 * 109.47197 * 295.00233 * 3 2 1 6 6 C 1.53000 * 109.47236 * 175.00029 * 3 2 1 7 7 N 1.46497 * 109.47224 * 185.00110 * 6 3 2 8 8 C 1.35313 * 125.86667 * 125.29209 * 7 6 3 9 9 C 1.35349 * 106.17218 * 180.18574 * 8 7 6 10 10 C 1.50697 * 126.75364 * 179.85517 * 9 8 7 11 11 N 1.46499 * 109.47276 * 94.71254 * 10 9 8 12 12 C 1.36935 * 119.99938 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00518 * 359.72965 * 12 11 10 14 14 C 1.38817 * 119.99990 * 179.97438 * 12 11 10 15 15 N 1.31617 * 119.99869 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99909 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47361 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46860 * 120.00310 * 16 14 12 19 19 H 1.48500 * 109.47264 * 240.00123 * 16 14 12 20 20 N 1.33776 * 106.49865 * 359.59278 * 9 8 7 21 21 N 1.28634 * 108.88055 * 0.26390 * 20 9 8 22 22 H 1.08994 * 109.46858 * 60.00048 * 1 2 3 23 23 H 1.08999 * 109.46910 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47268 * 299.99721 * 1 2 3 25 25 H 1.08994 * 109.47060 * 240.00240 * 2 1 3 26 26 H 1.08997 * 109.47185 * 119.99542 * 2 1 3 27 27 H 1.09007 * 109.46937 * 300.00153 * 5 3 2 28 28 H 1.08998 * 109.47334 * 59.99784 * 5 3 2 29 29 H 1.08999 * 109.47370 * 180.02562 * 5 3 2 30 30 H 1.08997 * 109.46709 * 64.99831 * 6 3 2 31 31 H 1.09004 * 109.46796 * 305.00347 * 6 3 2 32 32 H 1.08001 * 126.91913 * 0.04070 * 8 7 6 33 33 H 1.09004 * 109.47205 * 334.71228 * 10 9 8 34 34 H 1.09005 * 109.47240 * 214.71438 * 10 9 8 35 35 H 0.96999 * 119.99984 * 0.02562 * 11 10 9 36 36 H 0.96996 * 119.99743 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4445 0.1257 7 7 4.0432 2.8239 0.2458 8 6 4.8253 3.3083 1.2381 9 6 5.0203 4.6183 0.9591 10 6 5.8239 5.6028 1.7689 11 7 7.1846 5.6817 1.2317 12 6 8.1019 6.5173 1.8107 13 1 7.8212 7.1216 2.6607 14 6 9.3914 6.5916 1.3019 15 7 9.7321 5.8592 0.2628 16 14 10.6426 7.7322 2.0913 17 1 10.0141 8.4410 3.2350 18 1 11.7993 6.9376 2.5773 19 1 11.1093 8.7242 1.0897 20 7 4.3642 4.8658 -0.1801 21 7 3.7958 3.7823 -0.5770 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 2.0698 1.5876 -2.1492 28 1 0.5489 2.1253 -1.3969 29 1 1.9989 3.1542 -1.3075 30 1 4.0029 0.9837 -0.7596 31 1 3.8570 0.8801 1.0113 32 1 5.2136 2.7605 2.0841 33 1 5.8619 5.2738 2.8074 34 1 5.3549 6.5854 1.7160 35 1 7.4357 5.1419 0.4659 36 1 10.6329 5.9115 -0.0929 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603198461.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:46 Heat of formation + Delta-G solvation = 74.732691 kcal Electronic energy + Delta-G solvation = -16525.589717 eV Core-core repulsion = 13853.213342 eV Total energy + Delta-G solvation = -2672.376376 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.19596 -38.33123 -36.72949 -34.77918 -33.59203 -31.65680 -30.72388 -28.26428 -27.57536 -24.97958 -24.75006 -22.72399 -21.99233 -20.99616 -19.32004 -18.14309 -17.32052 -16.62128 -16.15775 -15.85524 -15.60096 -15.35113 -15.01095 -14.47629 -14.24526 -14.07023 -13.64238 -13.15548 -13.00114 -12.97222 -12.79253 -12.45756 -12.36313 -12.04332 -11.91689 -11.85823 -11.73284 -11.53872 -11.44758 -10.97297 -10.85949 -10.14469 -9.01696 -7.93067 -5.23575 0.68969 1.46796 1.51320 1.52279 1.55815 1.62669 2.60029 3.37814 3.41681 3.57008 3.71688 3.95377 4.04824 4.20174 4.22340 4.30420 4.31963 4.47799 4.61632 4.65802 4.73730 4.82274 4.90221 5.04412 5.09819 5.13936 5.19694 5.21479 5.30203 5.44726 5.51466 5.53689 5.83456 6.26840 7.33396 7.58168 8.04840 8.31067 9.31234 Molecular weight = 238.15amu Principal moments of inertia in cm(-1) A = 0.069604 B = 0.003971 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.180670 B = 7049.135551 C = 7074.415605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.109 4.109 3 C -0.095 4.095 4 H 0.069 0.931 5 C -0.163 4.163 6 C 0.106 3.894 7 N -0.282 5.282 8 C -0.024 4.024 9 C -0.041 4.041 10 C 0.236 3.764 11 N -0.740 5.740 12 C -0.243 4.243 13 H 0.085 0.915 14 C -0.079 4.079 15 N -0.974 5.974 16 Si 0.980 3.020 17 H -0.261 1.261 18 H -0.291 1.291 19 H -0.297 1.297 20 N -0.307 5.307 21 N -0.103 5.103 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.107 0.893 31 H 0.141 0.859 32 H 0.227 0.773 33 H 0.063 0.937 34 H 0.027 0.973 35 H 0.370 0.630 36 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.568 -15.707 2.918 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C -0.114 4.114 4 H 0.087 0.913 5 C -0.220 4.220 6 C -0.013 4.013 7 N -0.076 5.076 8 C -0.176 4.176 9 C -0.180 4.180 10 C 0.108 3.892 11 N -0.382 5.382 12 C -0.374 4.374 13 H 0.103 0.897 14 C -0.271 4.271 15 N -0.625 5.625 16 Si 0.809 3.191 17 H -0.185 1.185 18 H -0.218 1.218 19 H -0.224 1.224 20 N -0.174 5.174 21 N -0.082 5.082 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.125 0.875 31 H 0.159 0.841 32 H 0.244 0.756 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.201 0.799 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -18.278 -15.201 1.743 23.836 hybrid contribution 1.433 0.264 0.596 1.574 sum -16.845 -14.936 2.339 22.634 Atomic orbital electron populations 1.21814 0.95320 1.02263 1.01821 1.21480 0.96463 0.93179 1.03615 1.21409 0.91934 0.98886 0.99198 0.91290 1.22117 1.01690 1.01540 0.96702 1.22757 0.96477 0.74729 1.07311 1.47699 1.32513 1.11869 1.15487 1.23865 1.00250 0.95069 0.98367 1.22289 1.03518 0.95802 0.96404 1.18953 0.82633 0.93572 0.94008 1.42537 1.07440 1.51103 1.37161 1.19753 0.91329 1.16127 1.10212 0.89737 1.25664 0.99838 1.02373 0.99214 1.69867 1.19392 1.45620 1.27573 0.84976 0.78689 0.77837 0.77646 1.18514 1.21774 1.22433 1.75035 1.11169 1.19098 1.12073 1.78055 1.21038 0.91766 1.17321 0.92836 0.91550 0.92988 0.90682 0.89919 0.92315 0.91751 0.92638 0.87477 0.84113 0.75630 0.91966 0.95534 0.79864 0.94074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.67 71.98 0.70 -0.84 16 2 C -0.11 -1.01 5.40 30.60 0.17 -0.85 16 3 C -0.09 -1.39 2.58 -10.79 -0.03 -1.42 16 4 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 5 C -0.16 -3.11 8.65 71.98 0.62 -2.49 16 6 C 0.11 1.65 5.93 86.38 0.51 2.17 16 7 N -0.28 -7.62 3.44 -347.74 -1.20 -8.82 16 8 C -0.02 -0.69 11.50 83.49 0.96 0.27 16 9 C -0.04 -1.62 6.61 41.59 0.28 -1.34 16 10 C 0.24 10.17 6.82 85.63 0.58 10.75 16 11 N -0.74 -39.90 5.59 -347.17 -1.94 -41.84 16 12 C -0.24 -13.90 9.99 84.04 0.84 -13.06 16 13 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 14 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 15 N -0.97 -61.79 13.06 21.65 0.28 -61.51 16 16 Si 0.98 46.90 29.55 68.60 2.03 48.92 16 17 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 18 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 19 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 20 N -0.31 -13.09 12.41 -48.60 -0.60 -13.69 16 21 N -0.10 -3.66 10.24 37.02 0.38 -3.29 16 22 H 0.05 0.59 6.56 -2.39 -0.02 0.58 16 23 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 25 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.06 1.09 6.56 -2.39 -0.02 1.07 16 29 H 0.05 1.46 5.49 -2.39 -0.01 1.45 16 30 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.14 1.17 8.07 -2.39 -0.02 1.15 16 32 H 0.23 4.53 8.06 -2.91 -0.02 4.51 16 33 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 34 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.37 21.85 7.66 -92.71 -0.71 21.14 16 36 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -74.87 300.10 4.40 -70.48 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.36 Total: 20.74 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 5.09 Total: -11.00 kcal Atomic # 7 Polarization: -126.06 SS G_CDS: -3.08 Total: -129.14 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -74.87 4.40 -70.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603198461.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.209 kcal (2) G-P(sol) polarization free energy of solvation -74.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds