Wall clock time and date at job start Sun Mar 29 2020 23:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47183 * 2 1 4 4 C 1.52995 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47350 * 305.00569 * 4 3 2 6 6 C 1.53000 * 109.46922 * 65.00049 * 4 3 2 7 7 N 1.46499 * 109.47385 * 185.00019 * 4 3 2 8 8 C 1.35309 * 125.87027 * 275.02709 * 7 4 3 9 9 C 1.35353 * 106.17498 * 179.97438 * 8 7 4 10 10 C 1.50706 * 126.75076 * 179.97438 * 9 8 7 11 11 N 1.46499 * 109.46696 * 94.99878 * 10 9 8 12 12 C 1.36944 * 119.99768 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99816 * 0.02562 * 12 11 10 14 14 C 1.38813 * 119.99974 * 179.97438 * 12 11 10 15 15 N 1.31615 * 120.00149 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99885 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.46971 * 60.00752 * 16 14 12 18 18 H 1.48504 * 109.47296 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47513 * 300.00794 * 16 14 12 20 20 N 1.33775 * 106.49785 * 359.97438 * 9 8 7 21 21 N 1.28637 * 108.88137 * 0.02562 * 20 9 8 22 22 H 1.08994 * 109.47079 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.46720 * 299.99882 * 1 2 3 24 24 H 1.09003 * 109.46712 * 59.99442 * 1 2 3 25 25 H 1.09001 * 109.47244 * 240.00531 * 2 1 3 26 26 H 1.08996 * 109.46977 * 120.00309 * 2 1 3 27 27 H 1.09000 * 109.47092 * 59.99959 * 3 2 1 28 28 H 1.08999 * 109.47344 * 300.00549 * 3 2 1 29 29 H 1.08998 * 109.47412 * 299.99984 * 6 4 3 30 30 H 1.09003 * 109.47058 * 60.00431 * 6 4 3 31 31 H 1.09007 * 109.47151 * 179.97438 * 6 4 3 32 32 H 1.08002 * 126.91290 * 359.97438 * 8 7 4 33 33 H 1.08998 * 109.46953 * 215.00023 * 10 9 8 34 34 H 1.08994 * 109.47138 * 335.00219 * 10 9 8 35 35 H 0.96994 * 120.00507 * 0.02562 * 11 10 9 36 36 H 0.96997 * 120.00336 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9331 0.8531 0.8427 6 6 4.0805 0.8327 -1.3064 7 7 4.0583 2.8185 0.1210 8 6 4.2325 3.6901 -0.8992 9 6 4.6942 4.8344 -0.3429 10 6 5.0446 6.1103 -1.0642 11 7 3.8960 7.0191 -1.0348 12 6 3.9805 8.2490 -1.6311 13 1 4.8938 8.5487 -2.1234 14 6 2.8920 9.1099 -1.6037 15 7 1.7788 8.7444 -1.0042 16 14 3.0076 10.7878 -2.4165 17 1 3.2943 10.6180 -3.8637 18 1 1.7206 11.5093 -2.2477 19 1 4.0998 11.5701 -1.7840 20 7 4.7783 4.6099 0.9733 21 7 4.3946 3.4063 1.2156 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9564 -0.8899 29 1 3.7173 -0.1910 -1.3960 30 1 3.7176 1.4221 -2.1485 31 1 5.1706 0.8332 -1.3062 32 1 4.0415 3.5092 -1.9467 33 1 5.8950 6.5834 -0.5732 34 1 5.3023 5.8838 -2.0988 35 1 3.0758 6.7501 -0.5923 36 1 1.0182 9.3461 -0.9847 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603199622.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:41 Heat of formation + Delta-G solvation = 94.035900 kcal Electronic energy + Delta-G solvation = -16632.943969 eV Core-core repulsion = 13961.404643 eV Total energy + Delta-G solvation = -2671.539326 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.149 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.89432 -37.43977 -34.84527 -33.61677 -31.87972 -30.45087 -29.85143 -27.16261 -25.78748 -24.06139 -22.76193 -21.73857 -20.68350 -20.29352 -17.38930 -16.74341 -16.13793 -15.70527 -14.66948 -14.57147 -14.27357 -13.86932 -13.61317 -13.24668 -13.06659 -12.69893 -12.55142 -12.36809 -11.97486 -11.61506 -11.50537 -11.35045 -11.14640 -10.92779 -10.83525 -10.75801 -10.33507 -10.08769 -9.78478 -9.61467 -8.83672 -8.74348 -6.87279 -5.69911 -2.99373 1.94483 2.52496 3.00700 3.48933 3.53054 3.54489 4.18676 4.36365 4.61358 4.65695 4.68935 4.75950 4.89327 5.06604 5.21489 5.31481 5.35678 5.40484 5.48043 5.54442 5.57774 5.65297 5.71668 5.82205 5.85012 5.99966 6.03811 6.23221 6.49176 6.73203 6.83754 6.92837 7.74296 8.47522 8.95377 9.59074 10.15588 10.51742 11.52949 Molecular weight = 238.15amu Principal moments of inertia in cm(-1) A = 0.029761 B = 0.004904 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.603134 B = 5708.807155 C = 6227.800646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.134 4.134 4 C 0.144 3.856 5 H 0.109 0.891 6 C -0.166 4.166 7 N -0.294 5.294 8 C -0.043 4.043 9 C -0.008 4.008 10 C 0.233 3.767 11 N -0.726 5.726 12 C -0.240 4.240 13 H 0.073 0.927 14 C -0.013 4.013 15 N -0.933 5.933 16 Si 0.909 3.091 17 H -0.286 1.286 18 H -0.292 1.292 19 H -0.285 1.285 20 N -0.257 5.257 21 N -0.099 5.099 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.185 0.815 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.385 0.615 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.065 -20.741 -1.392 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.172 4.172 4 C 0.042 3.958 5 H 0.127 0.873 6 C -0.224 4.224 7 N -0.088 5.088 8 C -0.194 4.194 9 C -0.146 4.146 10 C 0.104 3.896 11 N -0.371 5.371 12 C -0.371 4.371 13 H 0.091 0.909 14 C -0.209 4.209 15 N -0.582 5.582 16 Si 0.740 3.260 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.212 1.212 20 N -0.124 5.124 21 N -0.078 5.078 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.202 0.798 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.219 0.781 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.268 -20.749 0.064 20.788 hybrid contribution -0.518 0.857 -1.428 1.744 sum 0.750 -19.892 -1.364 19.953 Atomic orbital electron populations 1.21764 0.95207 1.01766 1.02383 1.21524 0.96559 0.95248 1.02410 1.22073 0.92336 0.98526 1.04298 1.21626 0.95389 0.77553 1.01220 0.87286 1.22247 1.02357 1.02095 0.95720 1.47462 1.43175 1.12510 1.05641 1.23278 1.08589 0.91103 0.96392 1.22453 1.04003 0.97455 0.90667 1.18930 0.92099 0.83710 0.94854 1.42306 1.12053 1.15179 1.67521 1.19203 0.98274 0.91846 1.27789 0.90946 1.24748 0.96101 0.98731 1.01299 1.69672 1.03383 1.36786 1.48310 0.86237 0.76632 0.84089 0.79026 1.21250 1.21743 1.21189 1.75080 1.16238 1.05878 1.15224 1.78232 1.16817 1.03069 1.09669 0.92512 0.92482 0.92426 0.91354 0.91578 0.90529 0.90530 0.89531 0.90939 0.91300 0.79797 0.94412 0.94576 0.78116 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -0.81 5.69 -26.73 -0.15 -0.96 16 3 C -0.13 -1.26 5.01 -26.73 -0.13 -1.39 16 4 C 0.14 1.42 3.32 -67.93 -0.23 1.19 16 5 H 0.11 0.97 8.14 -51.92 -0.42 0.55 16 6 C -0.17 -1.18 8.59 37.16 0.32 -0.86 16 7 N -0.29 -4.37 3.25 -54.76 -0.18 -4.55 16 8 C -0.04 -0.68 10.62 -17.05 -0.18 -0.87 16 9 C -0.01 -0.15 6.62 -82.77 -0.55 -0.70 16 10 C 0.23 5.09 6.82 -5.19 -0.04 5.06 16 11 N -0.73 -19.54 5.59 -61.09 -0.34 -19.88 16 12 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 13 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 14 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 15 N -0.93 -29.19 13.06 55.49 0.72 -28.46 16 16 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 20 N -0.26 -5.51 12.41 33.29 0.41 -5.10 16 21 N -0.10 -1.86 13.16 60.35 0.79 -1.06 16 22 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.37 6.57 -51.93 -0.34 0.03 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 0.42 6.57 -51.93 -0.34 0.08 16 30 H 0.07 0.52 7.17 -51.93 -0.37 0.15 16 31 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.18 2.34 7.30 -52.49 -0.38 1.96 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.39 11.18 7.66 -40.82 -0.31 10.87 16 36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 303.24 15.07 4.57 4.57 Total: -1.00 -34.18 303.24 -5.40 -39.58 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.52 Total: 3.94 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -0.83 Total: -6.80 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 1.41 Total: -59.06 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.18 -5.40 -39.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603199622.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.619 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds