Wall clock time and date at job start Sun Mar 29 2020 23:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47527 * 2 1 4 4 C 1.53002 * 109.46918 * 120.00126 * 2 1 3 5 5 C 1.50696 * 109.46919 * 294.99716 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00183 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 299.99939 * 9 7 5 13 13 C 1.53004 * 109.47082 * 240.00266 * 2 1 3 14 14 N 1.46899 * 109.47039 * 64.99745 * 13 2 1 15 15 C 1.46907 * 110.99495 * 180.02562 * 14 13 2 16 16 C 1.50697 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.39674 * 127.05069 * 95.00268 * 16 15 14 18 18 N 1.31381 * 105.90295 * 179.97438 * 17 16 15 19 19 N 1.28599 * 108.71763 * 0.02562 * 18 17 16 20 20 C 1.46495 * 124.62272 * 179.97438 * 19 18 17 21 21 N 1.28604 * 110.75958 * 359.74419 * 19 18 17 22 22 H 1.09001 * 109.46743 * 59.99815 * 1 2 3 23 23 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47048 * 300.00084 * 1 2 3 25 25 H 1.09000 * 109.46497 * 174.99981 * 4 2 1 26 26 H 1.08999 * 109.46623 * 55.00045 * 4 2 1 27 27 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 28 28 H 1.08995 * 109.46860 * 185.00644 * 13 2 1 29 29 H 1.09001 * 109.46604 * 304.99920 * 13 2 1 30 30 H 1.00896 * 111.00476 * 303.95134 * 14 13 2 31 31 H 1.09003 * 109.47363 * 300.00360 * 15 14 13 32 32 H 1.09000 * 109.46789 * 60.00422 * 15 14 13 33 33 H 1.07997 * 127.05162 * 359.95181 * 17 16 15 34 34 H 1.09001 * 109.47076 * 90.02272 * 20 19 18 35 35 H 1.09002 * 109.47337 * 210.02235 * 20 19 18 36 36 H 1.08998 * 109.47207 * 330.02130 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0570 2.4765 6 1 1.0807 0.9746 2.3756 7 6 1.9932 -0.4018 3.7283 8 7 2.6815 -1.5157 3.8507 9 14 1.4997 0.5634 5.2496 10 1 0.0197 0.6701 5.3095 11 1 1.9946 -0.1368 6.4621 12 1 2.0919 1.9238 5.1865 13 6 2.0400 -0.7212 -1.2493 14 7 1.6513 0.0375 -2.4456 15 6 2.1247 -0.6271 -3.6673 16 6 1.7088 0.1787 -4.8709 17 6 2.4685 1.1371 -5.5454 18 7 1.7086 1.5757 -6.5234 19 7 0.5802 0.9606 -6.4769 20 6 -0.5280 1.1832 -7.4087 21 7 0.5590 0.1201 -5.5038 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.1263 -0.7995 1.2055 26 1 1.6053 -1.7198 1.2950 27 1 2.9380 -2.0168 3.0608 28 1 3.1263 -0.7995 -1.2056 29 1 1.6054 -1.7198 -1.2952 30 1 0.6528 0.1793 -2.4754 31 1 3.2116 -0.7051 -3.6406 32 1 1.6903 -1.6248 -3.7297 33 1 3.4742 1.4533 -5.3110 34 1 -0.4301 0.5069 -8.2580 35 1 -1.4736 0.9937 -6.9006 36 1 -0.5051 2.2144 -7.7609 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877521893.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:52 Heat of formation + Delta-G solvation = 65.789743 kcal Electronic energy + Delta-G solvation = -16304.167598 eV Core-core repulsion = 13631.403426 eV Total energy + Delta-G solvation = -2672.764171 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.52326 -38.63311 -36.28595 -34.78261 -33.83135 -33.11168 -29.61160 -28.38289 -27.25163 -25.77204 -24.06119 -23.29436 -21.83585 -20.88468 -18.86714 -18.29559 -17.80614 -17.00466 -16.00025 -15.79321 -15.58170 -15.53671 -15.14628 -14.90032 -14.02156 -13.78185 -13.66986 -13.51445 -13.29501 -13.15633 -12.86781 -12.54277 -12.30707 -11.95347 -11.87136 -11.81521 -11.58293 -11.35373 -11.26588 -10.56981 -10.49515 -10.17713 -9.41896 -8.62851 -6.31675 0.76961 1.37289 1.50781 1.54033 1.62504 1.81441 2.59752 3.07009 3.21054 3.39007 3.77135 4.11326 4.15176 4.22385 4.28714 4.29981 4.37719 4.52827 4.60745 4.63436 4.71127 4.77236 4.94267 5.04635 5.07174 5.21500 5.25191 5.32378 5.49422 5.65108 5.75491 5.96471 6.11513 6.25114 6.34111 6.65608 7.30574 7.48752 8.78184 Molecular weight = 238.15amu Principal moments of inertia in cm(-1) A = 0.056749 B = 0.003677 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.278194 B = 7612.438116 C = 7780.618931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.070 4.070 3 H 0.056 0.944 4 C 0.017 3.983 5 C -0.606 4.606 6 H 0.051 0.949 7 C -0.042 4.042 8 N -0.942 5.942 9 Si 1.115 2.885 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.077 3.923 14 N -0.685 5.685 15 C 0.150 3.850 16 C -0.003 4.003 17 C -0.015 4.015 18 N -0.309 5.309 19 N -0.161 5.161 20 C 0.096 3.904 21 N -0.305 5.305 22 H 0.062 0.938 23 H 0.041 0.959 24 H 0.043 0.957 25 H -0.013 1.013 26 H -0.012 1.012 27 H 0.255 0.745 28 H 0.070 0.930 29 H 0.028 0.972 30 H 0.341 0.659 31 H 0.110 0.890 32 H 0.047 0.953 33 H 0.220 0.780 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.880 4.491 -21.986 22.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.089 4.089 3 H 0.074 0.926 4 C -0.020 4.020 5 C -0.644 4.644 6 H 0.069 0.931 7 C -0.239 4.239 8 N -0.580 5.580 9 Si 0.936 3.064 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.195 1.195 13 C -0.052 4.052 14 N -0.317 5.317 15 C 0.019 3.981 16 C -0.165 4.165 17 C -0.196 4.196 18 N -0.151 5.151 19 N -0.063 5.063 20 C -0.042 4.042 21 N -0.149 5.149 22 H 0.081 0.919 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.006 0.994 26 H 0.006 0.994 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.159 0.841 31 H 0.128 0.872 32 H 0.065 0.935 33 H 0.236 0.764 34 H 0.124 0.876 35 H 0.132 0.868 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.324 5.148 -21.256 22.509 hybrid contribution 0.154 -1.155 -1.043 1.564 sum -5.170 3.993 -22.299 23.236 Atomic orbital electron populations 1.21640 0.95236 1.00635 1.00860 1.20914 0.96018 0.99004 0.93010 0.92568 1.19167 0.94086 0.94755 0.94005 1.22457 1.38098 1.10357 0.93516 0.93091 1.27368 0.94086 0.97308 1.05137 1.70912 1.37853 1.16380 1.32897 0.82962 0.76895 0.74568 0.71931 1.19492 1.21047 1.19524 1.21880 1.00346 0.94194 0.88742 1.60542 1.20108 1.50181 1.00881 1.20136 1.01713 0.92949 0.83263 1.23161 0.91101 1.01882 1.00402 1.25059 1.03026 0.98062 0.93488 1.74025 0.95564 1.21636 1.23887 1.48404 1.12128 1.24225 1.21586 1.22536 0.84738 1.06064 0.90904 1.73953 1.24126 1.14593 1.02278 0.91910 0.93992 0.93742 0.99437 0.99414 0.93557 0.91129 0.95384 0.84054 0.87219 0.93494 0.76376 0.87588 0.86826 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 8.77 71.98 0.63 -4.12 16 2 C -0.07 -2.90 2.55 -10.79 -0.03 -2.93 16 3 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 4 C 0.02 0.91 3.76 29.85 0.11 1.02 16 5 C -0.61 -34.84 8.41 25.60 0.22 -34.63 16 6 H 0.05 2.86 7.06 -2.91 -0.02 2.84 16 7 C -0.04 -2.48 5.46 84.66 0.46 -2.02 16 8 N -0.94 -59.34 13.65 21.45 0.29 -59.05 16 9 Si 1.11 51.07 29.90 68.60 2.05 53.12 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 13 C 0.08 2.58 5.14 86.30 0.44 3.03 16 14 N -0.68 -19.60 6.49 -517.92 -3.36 -22.96 16 15 C 0.15 3.56 6.27 85.55 0.54 4.10 16 16 C 0.00 -0.08 6.87 42.97 0.30 0.21 16 17 C -0.01 -0.33 12.16 85.11 1.03 0.71 16 18 N -0.31 -7.31 12.05 -56.87 -0.69 -7.99 16 19 N -0.16 -3.49 4.35 -206.56 -0.90 -4.39 16 20 C 0.10 0.99 11.57 127.77 1.48 2.47 16 21 N -0.31 -7.74 12.05 -47.25 -0.57 -8.31 16 22 H 0.06 1.98 6.68 -2.39 -0.02 1.96 16 23 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.04 1.83 6.95 -2.39 -0.02 1.81 16 25 H -0.01 -0.70 8.00 -2.39 -0.02 -0.72 16 26 H -0.01 -0.69 8.01 -2.39 -0.02 -0.71 16 27 H 0.26 16.21 7.22 -92.71 -0.67 15.54 16 28 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.03 0.92 8.14 -2.39 -0.02 0.91 16 30 H 0.34 9.86 6.97 -89.70 -0.63 9.23 16 31 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.22 3.60 8.06 -2.91 -0.02 3.58 16 34 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.11 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -71.82 303.00 2.55 -69.28 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.54 Total: 12.48 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: 5.18 Total: -32.17 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -5.22 Total: -102.70 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.05 Total: 53.12 kcal Total: -71.82 2.55 -69.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877521893.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.065 kcal (2) G-P(sol) polarization free energy of solvation -71.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds