Wall clock time and date at job start Sun Mar 29 2020 23:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47239 * 2 1 4 4 C 1.53002 * 109.47327 * 239.99813 * 2 1 3 5 5 C 1.50696 * 109.46919 * 64.99798 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00183 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 299.99939 * 9 7 5 13 13 C 1.52999 * 109.47107 * 119.99444 * 2 1 3 14 14 N 1.46903 * 109.47368 * 295.00343 * 13 2 1 15 15 C 1.46898 * 111.00043 * 179.97438 * 14 13 2 16 16 C 1.50697 * 109.47119 * 179.97438 * 15 14 13 17 17 C 1.35353 * 126.90945 * 95.02607 * 16 15 14 18 18 N 1.33773 * 106.49534 * 179.97438 * 17 16 15 19 19 N 1.28629 * 108.88457 * 0.02562 * 18 17 16 20 20 N 1.28712 * 110.18311 * 359.75279 * 19 18 17 21 21 C 1.46498 * 125.87564 * 180.24007 * 20 19 18 22 22 H 1.08997 * 109.47105 * 60.00166 * 1 2 3 23 23 H 1.08997 * 109.46686 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47004 * 300.00313 * 1 2 3 25 25 H 1.09000 * 109.46497 * 305.00064 * 4 2 1 26 26 H 1.08999 * 109.46623 * 185.00128 * 4 2 1 27 27 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 28 28 H 1.09008 * 109.47057 * 55.00147 * 13 2 1 29 29 H 1.09005 * 109.47222 * 174.99830 * 13 2 1 30 30 H 1.00898 * 110.99650 * 303.95303 * 14 13 2 31 31 H 1.09006 * 109.47224 * 299.99867 * 15 14 13 32 32 H 1.09009 * 109.47278 * 59.99601 * 15 14 13 33 33 H 1.08005 * 126.75447 * 359.97438 * 17 16 15 34 34 H 1.08996 * 109.47412 * 270.17658 * 21 20 19 35 35 H 1.09001 * 109.46552 * 30.17768 * 21 20 19 36 36 H 1.08997 * 109.47304 * 150.17493 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0800 0.9740 -2.3757 7 6 1.9925 -0.4024 -3.7283 8 7 2.6705 -1.5225 -3.8513 9 14 1.4976 0.5619 -5.2497 10 1 2.0897 1.9224 -5.1877 11 1 1.9928 -0.1381 -6.4622 12 1 0.0176 0.6683 -5.3087 13 6 2.0400 -0.7211 1.2493 14 7 1.6514 0.0376 2.4457 15 6 2.1247 -0.6269 3.6673 16 6 1.7087 0.1789 4.8708 17 6 0.6044 -0.0066 5.6312 18 7 0.6380 0.9308 6.5849 19 7 1.6928 1.6495 6.4253 20 7 2.3665 1.2305 5.4118 21 6 3.6271 1.7966 4.9254 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6054 -1.7198 -1.2950 26 1 3.1264 -0.7995 -1.2054 27 1 2.9272 -2.0234 -3.0613 28 1 1.6054 -1.7197 1.2953 29 1 3.1264 -0.7994 1.2057 30 1 1.9881 0.9874 2.3966 31 1 1.6903 -1.6247 3.7298 32 1 3.2117 -0.7049 3.6406 33 1 -0.1546 -0.7628 5.4947 34 1 3.4168 2.5781 4.1954 35 1 4.1816 2.2209 5.7625 36 1 4.2209 1.0119 4.4567 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877534828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:56 Heat of formation + Delta-G solvation = 78.623347 kcal Electronic energy + Delta-G solvation = -16545.768579 eV Core-core repulsion = 13873.560914 eV Total energy + Delta-G solvation = -2672.207664 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.149 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.38739 -37.30674 -35.05992 -34.37524 -32.45919 -30.86302 -28.24117 -26.79499 -26.28285 -24.27083 -22.71803 -22.39806 -20.95950 -19.47350 -17.40293 -16.90833 -16.67734 -15.84290 -15.10022 -14.59306 -14.40935 -13.73929 -13.59799 -13.55804 -13.31778 -13.18184 -12.76825 -12.00209 -11.81030 -11.63983 -11.44136 -11.06974 -11.01897 -10.72840 -10.34695 -10.24548 -10.12258 -9.91018 -9.59704 -9.30534 -8.52930 -8.43863 -8.33880 -6.36643 -4.05244 1.38931 2.15772 2.46599 3.42798 3.44473 3.63050 4.04409 4.22159 4.39982 4.54074 4.57629 4.65145 4.88127 4.95443 5.27852 5.37211 5.39258 5.46571 5.57844 5.69371 5.92779 6.05823 6.19646 6.31013 6.37176 6.49407 6.77525 6.94936 7.01334 7.09229 7.27720 7.35514 7.52003 8.21533 8.36658 8.45770 8.88073 9.66140 11.03760 Molecular weight = 238.15amu Principal moments of inertia in cm(-1) A = 0.049760 B = 0.003982 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.561049 B = 7030.361635 C = 7080.661969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.075 4.075 3 H 0.054 0.946 4 C 0.014 3.986 5 C -0.595 4.595 6 H 0.050 0.950 7 C 0.013 3.987 8 N -0.915 5.915 9 Si 1.067 2.933 10 H -0.289 1.289 11 H -0.283 1.283 12 H -0.288 1.288 13 C 0.063 3.937 14 N -0.680 5.680 15 C 0.131 3.869 16 C -0.010 4.010 17 C -0.033 4.033 18 N -0.273 5.273 19 N -0.091 5.091 20 N -0.291 5.291 21 C 0.077 3.923 22 H 0.055 0.945 23 H 0.040 0.960 24 H 0.043 0.957 25 H 0.008 0.992 26 H 0.003 0.997 27 H 0.268 0.732 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.337 0.663 31 H 0.102 0.898 32 H 0.041 0.959 33 H 0.190 0.810 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.907 2.939 15.778 16.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.094 4.094 3 H 0.073 0.927 4 C -0.023 4.023 5 C -0.634 4.634 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.552 5.552 9 Si 0.895 3.105 10 H -0.215 1.215 11 H -0.208 1.208 12 H -0.214 1.214 13 C -0.065 4.065 14 N -0.311 5.311 15 C 0.000 4.000 16 C -0.143 4.143 17 C -0.191 4.191 18 N -0.139 5.139 19 N -0.071 5.071 20 N -0.085 5.085 21 C -0.064 4.064 22 H 0.074 0.926 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.026 0.974 26 H 0.021 0.979 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.154 0.846 31 H 0.120 0.880 32 H 0.059 0.941 33 H 0.207 0.793 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.324 3.712 15.305 15.804 hybrid contribution 1.082 -0.524 0.695 1.388 sum 2.405 3.188 16.000 16.491 Atomic orbital electron populations 1.21588 0.95318 1.00713 1.00435 1.21070 0.96327 0.98778 0.93243 0.92734 1.19248 0.95087 0.95690 0.92277 1.22023 1.38739 1.10336 0.92257 0.93206 1.25824 0.94681 0.97103 1.01385 1.70788 1.36265 1.14640 1.33458 0.83573 0.76137 0.75113 0.75666 1.21535 1.20823 1.21419 1.22232 0.97270 0.97945 0.89091 1.60561 1.64021 1.05677 1.00877 1.20374 0.97674 0.96850 0.85095 1.22185 0.96522 0.94565 1.00985 1.23375 0.99162 1.02010 0.94551 1.75076 1.12036 1.05036 1.21723 1.78281 1.02293 1.21096 1.05392 1.47211 1.19104 1.21735 1.20469 1.22285 0.81342 1.00781 1.02014 0.92558 0.94085 0.93774 0.97374 0.97886 0.92207 0.91013 0.95536 0.84605 0.87974 0.94128 0.79294 0.88803 0.87920 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.89 37.16 0.33 -2.00 16 2 C -0.08 -1.45 2.48 -90.62 -0.22 -1.67 16 3 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.01 0.35 3.76 -27.88 -0.10 0.25 16 5 C -0.60 -16.46 8.41 -34.44 -0.29 -16.75 16 6 H 0.05 1.36 7.06 -52.49 -0.37 0.99 16 7 C 0.01 0.38 5.46 -17.82 -0.10 0.29 16 8 N -0.91 -27.68 13.65 55.43 0.76 -26.92 16 9 Si 1.07 25.03 29.90 -169.99 -5.08 19.94 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.06 0.95 5.07 -3.82 -0.02 0.93 16 14 N -0.68 -8.55 5.94 -115.05 -0.68 -9.23 16 15 C 0.13 1.32 5.91 -4.98 -0.03 1.29 16 16 C -0.01 -0.11 6.51 -82.09 -0.53 -0.65 16 17 C -0.03 -0.40 11.99 -17.73 -0.21 -0.61 16 18 N -0.27 -3.99 12.41 30.24 0.38 -3.61 16 19 N -0.09 -1.26 13.16 60.35 0.79 -0.47 16 20 N -0.29 -3.18 3.74 -63.79 -0.24 -3.42 16 21 C 0.08 0.50 11.21 59.85 0.67 1.17 16 22 H 0.06 1.16 6.95 -51.93 -0.36 0.80 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 25 H 0.01 0.21 8.00 -51.93 -0.42 -0.21 16 26 H 0.00 0.07 8.01 -51.93 -0.42 -0.34 16 27 H 0.27 8.03 7.22 -40.82 -0.29 7.73 16 28 H 0.07 1.10 8.14 -51.92 -0.42 0.67 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.34 4.09 8.72 -39.29 -0.34 3.75 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.36 7.31 -51.92 -0.38 -0.02 16 33 H 0.19 1.82 8.06 -52.48 -0.42 1.39 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.47 7.22 -51.93 -0.37 0.09 16 LS Contribution 303.13 15.07 4.57 4.57 Total: -1.00 -32.83 303.13 -5.56 -38.38 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.53 Total: -1.49 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -0.51 Total: -17.76 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 1.00 Total: -43.65 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.08 Total: 19.94 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.83 -5.56 -38.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877534828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.008 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds