Wall clock time and date at job start Sun Mar 29 2020 23:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47239 * 2 1 4 4 C 1.53002 * 109.47327 * 239.99813 * 2 1 3 5 5 C 1.50696 * 109.46919 * 64.99798 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00183 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 299.99939 * 9 7 5 13 13 C 1.52999 * 109.47107 * 119.99444 * 2 1 3 14 14 N 1.46903 * 109.47368 * 295.00343 * 13 2 1 15 15 C 1.46898 * 111.00043 * 179.97438 * 14 13 2 16 16 C 1.50697 * 109.47119 * 179.97438 * 15 14 13 17 17 C 1.35353 * 126.90945 * 95.02607 * 16 15 14 18 18 N 1.33773 * 106.49534 * 179.97438 * 17 16 15 19 19 N 1.28629 * 108.88457 * 0.02562 * 18 17 16 20 20 N 1.28712 * 110.18311 * 359.75279 * 19 18 17 21 21 C 1.46498 * 125.87564 * 180.24007 * 20 19 18 22 22 H 1.08997 * 109.47105 * 60.00166 * 1 2 3 23 23 H 1.08997 * 109.46686 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47004 * 300.00313 * 1 2 3 25 25 H 1.09000 * 109.46497 * 305.00064 * 4 2 1 26 26 H 1.08999 * 109.46623 * 185.00128 * 4 2 1 27 27 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 28 28 H 1.09008 * 109.47057 * 55.00147 * 13 2 1 29 29 H 1.09005 * 109.47222 * 174.99830 * 13 2 1 30 30 H 1.00898 * 110.99650 * 303.95303 * 14 13 2 31 31 H 1.09006 * 109.47224 * 299.99867 * 15 14 13 32 32 H 1.09009 * 109.47278 * 59.99601 * 15 14 13 33 33 H 1.08005 * 126.75447 * 359.97438 * 17 16 15 34 34 H 1.08996 * 109.47412 * 270.17658 * 21 20 19 35 35 H 1.09001 * 109.46552 * 30.17768 * 21 20 19 36 36 H 1.08997 * 109.47304 * 150.17493 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0800 0.9740 -2.3757 7 6 1.9925 -0.4024 -3.7283 8 7 2.6705 -1.5225 -3.8513 9 14 1.4976 0.5619 -5.2497 10 1 2.0897 1.9224 -5.1877 11 1 1.9928 -0.1381 -6.4622 12 1 0.0176 0.6683 -5.3087 13 6 2.0400 -0.7211 1.2493 14 7 1.6514 0.0376 2.4457 15 6 2.1247 -0.6269 3.6673 16 6 1.7087 0.1789 4.8708 17 6 0.6044 -0.0066 5.6312 18 7 0.6380 0.9308 6.5849 19 7 1.6928 1.6495 6.4253 20 7 2.3665 1.2305 5.4118 21 6 3.6271 1.7966 4.9254 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6054 -1.7198 -1.2950 26 1 3.1264 -0.7995 -1.2054 27 1 2.9272 -2.0234 -3.0613 28 1 1.6054 -1.7197 1.2953 29 1 3.1264 -0.7994 1.2057 30 1 1.9881 0.9874 2.3966 31 1 1.6903 -1.6247 3.7298 32 1 3.2117 -0.7049 3.6406 33 1 -0.1546 -0.7628 5.4947 34 1 3.4168 2.5781 4.1954 35 1 4.1816 2.2209 5.7625 36 1 4.2209 1.0119 4.4567 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877534828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:55 Heat of formation + Delta-G solvation = 55.408243 kcal Electronic energy + Delta-G solvation = -16546.775261 eV Core-core repulsion = 13873.560914 eV Total energy + Delta-G solvation = -2673.214347 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.26981 -38.58562 -36.33120 -35.46816 -34.18767 -32.01845 -28.95416 -28.50078 -27.56347 -25.75377 -24.05762 -23.59813 -21.83911 -20.98686 -18.84918 -18.21268 -17.65743 -16.88136 -16.19681 -15.85301 -15.55219 -15.51043 -15.00650 -14.66416 -14.21269 -13.88386 -13.80244 -13.54819 -13.39624 -13.05759 -12.84887 -12.54707 -12.48038 -12.05160 -11.95314 -11.78546 -11.56566 -11.32885 -11.08061 -10.57933 -10.50134 -10.24671 -9.43674 -8.62964 -6.32131 0.51913 1.45640 1.53483 1.53902 1.61419 1.80380 2.58677 3.12895 3.20580 3.46244 3.62403 3.84686 4.06908 4.10350 4.20554 4.24332 4.42855 4.46792 4.59442 4.61252 4.80159 4.82806 4.86702 4.91099 5.10609 5.20936 5.35509 5.37263 5.50377 5.58148 5.66568 5.89560 6.10450 6.24568 6.30247 6.65772 7.45078 7.47870 8.78115 Molecular weight = 238.15amu Principal moments of inertia in cm(-1) A = 0.049760 B = 0.003982 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.561049 B = 7030.361635 C = 7080.661969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.069 4.069 3 H 0.052 0.948 4 C 0.016 3.984 5 C -0.606 4.606 6 H 0.050 0.950 7 C -0.041 4.041 8 N -0.942 5.942 9 Si 1.112 2.888 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.271 1.271 13 C 0.079 3.921 14 N -0.683 5.683 15 C 0.137 3.863 16 C -0.007 4.007 17 C -0.043 4.043 18 N -0.309 5.309 19 N -0.118 5.118 20 N -0.283 5.283 21 C 0.064 3.936 22 H 0.032 0.968 23 H 0.037 0.963 24 H 0.066 0.934 25 H -0.011 1.011 26 H -0.013 1.013 27 H 0.256 0.744 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.341 0.659 31 H 0.113 0.887 32 H 0.063 0.937 33 H 0.208 0.792 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.085 3.570 16.081 16.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 H 0.070 0.930 4 C -0.022 4.022 5 C -0.644 4.644 6 H 0.068 0.932 7 C -0.238 4.238 8 N -0.580 5.580 9 Si 0.934 3.066 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.197 1.197 13 C -0.050 4.050 14 N -0.314 5.314 15 C 0.007 3.993 16 C -0.141 4.141 17 C -0.202 4.202 18 N -0.174 5.174 19 N -0.097 5.097 20 N -0.078 5.078 21 C -0.075 4.075 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.084 0.916 25 H 0.007 0.993 26 H 0.005 0.995 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.159 0.841 31 H 0.131 0.869 32 H 0.081 0.919 33 H 0.225 0.775 34 H 0.123 0.877 35 H 0.134 0.866 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.510 4.369 15.651 16.320 hybrid contribution 1.061 -0.719 0.627 1.427 sum 2.571 3.650 16.279 16.880 Atomic orbital electron populations 1.21492 0.94908 1.00480 1.00305 1.20902 0.96526 0.98343 0.92989 0.92981 1.19187 0.93967 0.94926 0.94082 1.22454 1.37954 1.10411 0.93579 0.93199 1.27294 0.94159 0.97265 1.05042 1.70918 1.38280 1.15939 1.32905 0.82988 0.76864 0.74622 0.72108 1.19487 1.21123 1.19672 1.21882 0.97322 0.97489 0.88301 1.60438 1.64462 1.05819 1.00720 1.20410 0.99036 0.96690 0.83204 1.22307 0.96187 0.94551 1.01007 1.23832 1.00087 1.02050 0.94266 1.75031 1.12956 1.06190 1.23198 1.78209 1.02834 1.21834 1.06851 1.47553 1.19641 1.21172 1.19421 1.22704 0.79994 1.01861 1.02973 0.94892 0.94356 0.91552 0.99316 0.99467 0.93502 0.90948 0.95032 0.84141 0.86891 0.91937 0.77489 0.87708 0.86560 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.17 8.89 71.98 0.64 -3.53 16 2 C -0.07 -2.56 2.48 -10.79 -0.03 -2.59 16 3 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 4 C 0.02 0.78 3.76 29.85 0.11 0.89 16 5 C -0.61 -33.54 8.41 25.60 0.22 -33.33 16 6 H 0.05 2.71 7.06 -2.91 -0.02 2.68 16 7 C -0.04 -2.31 5.46 84.66 0.46 -1.85 16 8 N -0.94 -57.71 13.65 21.45 0.29 -57.42 16 9 Si 1.11 49.75 29.90 68.60 2.05 51.80 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 13 C 0.08 2.21 5.07 86.30 0.44 2.65 16 14 N -0.68 -15.12 5.94 -517.90 -3.08 -18.20 16 15 C 0.14 2.30 5.91 85.56 0.51 2.81 16 16 C -0.01 -0.14 6.51 41.35 0.27 0.13 16 17 C -0.04 -1.00 11.99 83.73 1.00 0.01 16 18 N -0.31 -8.83 12.41 -58.25 -0.72 -9.56 16 19 N -0.12 -3.16 13.16 37.02 0.49 -2.67 16 20 N -0.28 -5.62 3.74 -355.74 -1.33 -6.95 16 21 C 0.06 0.65 11.21 127.77 1.43 2.09 16 22 H 0.03 1.32 6.95 -2.39 -0.02 1.31 16 23 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.07 2.11 7.75 -2.39 -0.02 2.09 16 25 H -0.01 -0.61 8.00 -2.39 -0.02 -0.63 16 26 H -0.01 -0.67 8.01 -2.39 -0.02 -0.69 16 27 H 0.26 15.73 7.22 -92.71 -0.67 15.06 16 28 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.34 7.22 8.72 -89.70 -0.78 6.44 16 31 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.06 0.83 7.31 -2.38 -0.02 0.82 16 33 H 0.21 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.12 0.87 8.14 -2.39 -0.02 0.86 16 36 H 0.12 0.71 7.22 -2.39 -0.02 0.70 16 Total: -1.00 -71.06 303.13 3.13 -67.93 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.38 Total: 7.78 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: 5.05 Total: -32.72 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -4.35 Total: -94.79 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.05 Total: 51.80 kcal Total: -71.06 3.13 -67.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877534828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.337 kcal (2) G-P(sol) polarization free energy of solvation -71.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds