Wall clock time and date at job start Sun Mar 29 2020 22:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46651 * 2 1 4 4 C 1.50693 * 109.46916 * 119.99837 * 2 1 3 5 5 C 1.34330 * 126.44300 * 120.00615 * 4 2 1 6 6 N 1.34485 * 107.66981 * 179.76475 * 5 4 2 7 7 C 1.30251 * 108.69711 * 0.41913 * 6 5 4 8 8 C 1.50703 * 125.61767 * 179.83988 * 7 6 5 9 9 N 1.46899 * 109.47107 * 89.69203 * 8 7 6 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.46835 * 325.00273 * 10 9 8 12 12 C 1.52997 * 109.46874 * 85.00270 * 10 9 8 13 13 C 1.50699 * 109.46851 * 204.99994 * 10 9 8 14 14 H 1.07998 * 120.00472 * 0.02562 * 13 10 9 15 15 C 1.37879 * 119.99705 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00261 * 180.02562 * 15 13 10 17 17 Si 1.86804 * 120.00001 * 0.02562 * 15 13 10 18 18 H 1.48495 * 109.47348 * 89.99570 * 17 15 13 19 19 H 1.48496 * 109.47246 * 210.00199 * 17 15 13 20 20 H 1.48509 * 109.46943 * 329.99773 * 17 15 13 21 21 O 1.33972 * 108.76183 * 359.57692 * 7 6 5 22 22 H 1.09003 * 109.46962 * 180.02562 * 1 2 3 23 23 H 1.08988 * 109.47299 * 299.99930 * 1 2 3 24 24 H 1.08998 * 109.47002 * 60.00390 * 1 2 3 25 25 H 1.08995 * 109.46917 * 240.00138 * 2 1 3 26 26 H 1.09000 * 109.46863 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47099 * 299.99550 * 3 2 1 28 28 H 1.08991 * 109.47650 * 59.99731 * 3 2 1 29 29 H 1.08001 * 126.16650 * 0.02562 * 5 4 2 30 30 H 1.09002 * 109.47152 * 329.69290 * 8 7 6 31 31 H 1.09001 * 109.46980 * 209.69391 * 8 7 6 32 32 H 1.00902 * 111.00582 * 303.95889 * 9 8 7 33 33 H 1.08997 * 109.47489 * 179.97438 * 12 10 9 34 34 H 1.09007 * 109.47004 * 300.00081 * 12 10 9 35 35 H 1.09007 * 109.47280 * 59.99720 * 12 10 9 36 36 H 0.96997 * 119.99862 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2304 5 6 2.8078 -1.8069 1.2581 6 7 3.0324 -2.1155 2.5477 7 6 2.4129 -1.2498 3.2982 8 6 2.4060 -1.2409 4.8052 9 7 3.5345 -0.4384 5.2954 10 6 3.5594 -0.4065 6.7639 11 1 2.5380 -0.4030 7.1445 12 6 4.2949 -1.6414 7.2883 13 6 4.2725 0.8375 7.2273 14 1 4.6675 1.5350 6.5034 15 6 4.4209 1.0853 8.5755 16 7 5.0428 2.1712 8.9800 17 14 3.7385 -0.1214 9.8276 18 1 4.7734 -1.1354 10.1531 19 1 3.3560 0.6096 11.0622 20 1 2.5432 -0.7979 9.2626 21 8 1.7878 -0.3653 2.5098 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1865 -2.3415 0.3996 30 1 2.4986 -2.2621 5.1751 31 1 1.4709 -0.8088 5.1616 32 1 4.4090 -0.7803 4.9259 33 1 4.3138 -1.6176 8.3779 34 1 3.7790 -2.5412 6.9530 35 1 5.3163 -1.6449 6.9076 36 1 5.1475 2.3452 9.9285 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878816354.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:30 Heat of formation + Delta-G solvation = -7.031674 kcal Electronic energy + Delta-G solvation = -16757.656483 eV Core-core repulsion = 14049.441788 eV Total energy + Delta-G solvation = -2708.214696 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.32419 -38.24712 -36.62022 -35.71200 -34.64003 -32.40223 -29.81902 -28.09120 -27.19894 -26.55255 -23.69415 -22.86299 -22.16111 -21.24364 -18.99410 -17.87706 -17.69570 -16.88319 -16.50057 -15.96953 -15.57780 -15.29852 -15.00383 -14.65231 -14.26225 -14.11772 -13.99817 -13.68225 -13.13166 -13.09474 -12.91544 -12.56527 -12.51776 -12.31441 -12.18280 -12.00558 -11.97425 -11.47518 -11.46576 -11.25122 -10.75417 -9.70128 -9.21112 -8.26416 -6.30361 0.43766 1.33222 1.38449 1.48941 1.63370 1.73523 2.33894 3.02421 3.07635 3.54683 3.63357 3.91440 4.06619 4.12265 4.26022 4.38703 4.42810 4.50318 4.57143 4.66257 4.73604 4.77961 4.83996 4.90411 4.95110 4.99196 5.16260 5.29707 5.31692 5.35979 5.36913 5.63534 5.89893 6.48988 6.59120 6.75916 6.76505 7.34241 8.91130 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039836 B = 0.004977 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.709794 B = 5624.113244 C = 5944.907733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.006 4.006 3 C -0.150 4.150 4 C -0.043 4.043 5 C -0.058 4.058 6 N -0.501 5.501 7 C 0.187 3.813 8 C 0.153 3.847 9 N -0.682 5.682 10 C 0.190 3.810 11 H 0.043 0.957 12 C -0.179 4.179 13 C -0.508 4.508 14 H 0.031 0.969 15 C 0.009 3.991 16 N -0.952 5.952 17 Si 0.955 3.045 18 H -0.266 1.266 19 H -0.299 1.299 20 H -0.243 1.243 21 O -0.206 6.206 22 H 0.061 0.939 23 H 0.042 0.958 24 H 0.091 0.909 25 H 0.133 0.867 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.040 0.960 29 H 0.211 0.789 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.339 0.661 33 H 0.041 0.959 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.582 -8.794 -17.648 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 C -0.207 4.207 4 C -0.096 4.096 5 C -0.196 4.196 6 N -0.231 5.231 7 C -0.020 4.020 8 C 0.024 3.976 9 N -0.314 5.314 10 C 0.081 3.919 11 H 0.060 0.940 12 C -0.238 4.238 13 C -0.547 4.547 14 H 0.050 0.950 15 C -0.188 4.188 16 N -0.593 5.593 17 Si 0.781 3.219 18 H -0.193 1.193 19 H -0.227 1.227 20 H -0.166 1.166 21 O -0.092 6.092 22 H 0.080 0.920 23 H 0.061 0.939 24 H 0.110 0.890 25 H 0.151 0.849 26 H 0.071 0.929 27 H 0.111 0.889 28 H 0.059 0.941 29 H 0.228 0.772 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.157 0.843 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.557 -8.549 -17.304 21.537 hybrid contribution 0.218 -0.304 0.888 0.964 sum -9.339 -8.853 -16.416 20.858 Atomic orbital electron populations 1.21871 0.92785 1.02670 1.03037 1.19995 0.97080 0.95852 0.89485 1.21885 1.01224 0.94623 1.02953 1.24249 1.02471 0.98763 0.84150 1.23580 1.02618 0.98411 0.94986 1.70409 1.21914 1.27340 1.03485 1.26294 0.93787 0.85822 0.96061 1.20320 0.97555 0.98885 0.80876 1.60471 1.05544 1.55394 1.09981 1.19464 0.96134 0.92664 0.83666 0.93965 1.22738 1.01549 0.99014 1.00454 1.21208 1.35557 1.06018 0.91893 0.95031 1.25844 0.95202 0.97219 1.00524 1.70052 1.44698 1.28445 1.16062 0.85775 0.80130 0.78365 0.77597 1.19253 1.22716 1.16626 1.84402 1.59112 1.48305 1.17373 0.92040 0.93860 0.89050 0.84938 0.92859 0.88853 0.94121 0.77240 0.89815 0.88027 0.84303 0.94079 0.91603 0.92806 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.18 71.98 0.66 -1.49 16 2 C -0.01 -0.09 3.33 -11.54 -0.04 -0.13 16 3 C -0.15 -2.61 9.18 71.98 0.66 -1.95 16 4 C -0.04 -1.09 5.89 24.79 0.15 -0.95 16 5 C -0.06 -1.50 11.79 83.39 0.98 -0.52 16 6 N -0.50 -16.33 11.29 -303.82 -3.43 -19.76 16 7 C 0.19 6.31 7.86 88.34 0.69 7.00 16 8 C 0.15 5.14 6.11 85.56 0.52 5.66 16 9 N -0.68 -28.15 6.22 -499.46 -3.11 -31.26 16 10 C 0.19 8.66 2.17 44.17 0.10 8.75 16 11 H 0.04 1.90 6.86 -2.39 -0.02 1.89 16 12 C -0.18 -7.16 8.64 71.98 0.62 -6.54 16 13 C -0.51 -29.35 9.42 25.60 0.24 -29.11 16 14 H 0.03 2.08 8.06 -2.91 -0.02 2.05 16 15 C 0.01 0.52 5.45 84.65 0.46 0.98 16 16 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 17 Si 0.95 44.15 24.37 68.60 1.67 45.82 16 18 H -0.27 -11.70 6.87 99.48 0.68 -11.02 16 19 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 20 H -0.24 -10.12 6.53 99.48 0.65 -9.47 16 21 O -0.21 -6.75 10.78 -3.72 -0.04 -6.79 16 22 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.13 1.36 8.11 -2.39 -0.02 1.35 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.21 3.75 8.06 -2.91 -0.02 3.73 16 30 H 0.08 2.50 7.44 -2.39 -0.02 2.48 16 31 H 0.10 3.22 8.05 -2.39 -0.02 3.20 16 32 H 0.34 13.85 8.47 -89.69 -0.76 13.09 16 33 H 0.04 1.70 3.27 -2.39 -0.01 1.69 16 34 H 0.07 2.16 7.45 -2.38 -0.02 2.14 16 35 H 0.05 2.16 8.13 -2.38 -0.02 2.14 16 36 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -70.38 297.18 0.67 -69.71 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.23 Total: 20.42 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 5.05 Total: -18.29 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -6.24 Total: -110.86 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.04 Total: -6.79 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.67 Total: 45.82 kcal Total: -70.38 0.67 -69.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878816354.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.674 kcal (2) G-P(sol) polarization free energy of solvation -70.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds