Wall clock time and date at job start Sun Mar 29 2020 23:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47000 * 2 1 4 4 C 1.35310 * 125.86679 * 124.98204 * 3 2 1 5 5 C 1.35351 * 106.17354 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.75046 * 180.02562 * 5 4 3 7 7 N 1.46906 * 109.46861 * 95.00331 * 6 5 4 8 8 C 1.46895 * 110.99931 * 66.05038 * 7 6 5 9 9 C 1.46907 * 110.99690 * 189.99743 * 7 6 5 10 10 H 1.09002 * 109.47008 * 55.00073 * 9 7 6 11 11 C 1.53000 * 109.47459 * 295.00233 * 9 7 6 12 12 C 1.50697 * 109.46921 * 175.00145 * 9 7 6 13 13 H 1.07994 * 120.00458 * 114.92770 * 12 9 7 14 14 C 1.37888 * 119.99782 * 294.92940 * 12 9 7 15 15 N 1.31514 * 119.99436 * 179.97438 * 14 12 9 16 16 Si 1.86796 * 120.00069 * 359.97438 * 14 12 9 17 17 H 1.48500 * 109.47299 * 84.86660 * 16 14 12 18 18 H 1.48503 * 109.47202 * 204.86509 * 16 14 12 19 19 H 1.48504 * 109.47326 * 324.86672 * 16 14 12 20 20 N 1.33766 * 106.49546 * 0.02562 * 5 4 3 21 21 N 1.28631 * 108.88677 * 359.97438 * 20 5 4 22 22 H 1.08997 * 109.47220 * 299.99954 * 1 2 3 23 23 H 1.08996 * 109.47172 * 60.00333 * 1 2 3 24 24 H 1.09000 * 109.47390 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46939 * 239.99609 * 2 1 3 26 26 H 1.08999 * 109.46897 * 120.00115 * 2 1 3 27 27 H 1.08006 * 126.91388 * 0.07379 * 4 3 2 28 28 H 1.09004 * 109.47543 * 215.00288 * 6 5 4 29 29 H 1.08996 * 109.47455 * 335.00424 * 6 5 4 30 30 H 1.08991 * 109.47722 * 59.99586 * 8 7 6 31 31 H 1.09003 * 109.46939 * 180.02562 * 8 7 6 32 32 H 1.09002 * 109.46803 * 299.99557 * 8 7 6 33 33 H 1.09001 * 109.47227 * 55.18499 * 11 9 7 34 34 H 1.08994 * 109.47340 * 175.19219 * 11 9 7 35 35 H 1.09001 * 109.46633 * 295.18600 * 11 9 7 36 36 H 0.97005 * 119.99482 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8752 1.9191 0.8984 5 6 3.0530 3.2079 0.5250 6 6 3.9221 4.2327 1.2074 7 7 5.2377 4.2715 0.5548 8 6 5.1274 4.7686 -0.8231 9 6 6.1870 5.0799 1.3317 10 1 6.2355 4.7018 2.3528 11 6 5.7211 6.5371 1.3491 12 6 7.5524 4.9965 0.6996 13 1 8.0044 5.8792 0.2720 14 6 8.2248 3.7931 0.6673 15 7 9.4163 3.7204 0.1152 16 14 7.4435 2.2664 1.4075 17 1 6.5479 1.6336 0.4062 18 1 8.5066 1.3058 1.7977 19 1 6.6547 2.6461 2.6072 20 7 2.3055 3.3930 -0.5687 21 7 1.7051 2.2918 -0.8540 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 3.3272 1.4202 1.7431 28 1 3.4519 5.2135 1.1358 29 1 4.0448 3.9644 2.2566 30 1 4.7120 5.7763 -0.8137 31 1 6.1154 4.7867 -1.2830 32 1 4.4727 4.1112 -1.3952 33 1 4.7001 6.5877 1.7272 34 1 6.3772 7.1206 1.9950 35 1 5.7544 6.9412 0.3373 36 1 9.8892 2.8737 0.0922 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887110193.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:49 Heat of formation + Delta-G solvation = 82.887820 kcal Electronic energy + Delta-G solvation = -17452.041275 eV Core-core repulsion = 14780.018532 eV Total energy + Delta-G solvation = -2672.022743 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.149 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.17618 -39.10001 -36.35976 -34.57039 -32.91108 -31.74174 -30.81374 -28.28401 -27.38542 -25.50629 -25.26446 -22.66944 -21.75931 -20.75038 -18.81616 -18.18791 -17.50723 -16.60409 -16.27141 -15.90732 -15.54767 -15.16837 -15.12524 -14.69052 -14.17814 -13.91456 -13.53485 -13.18543 -13.12071 -12.77440 -12.68023 -12.63971 -12.39287 -12.36468 -12.09554 -11.78437 -11.63638 -11.57603 -11.12936 -10.92841 -10.69758 -10.13742 -8.89033 -8.19262 -6.29183 0.68692 1.46971 1.49284 1.56917 1.60853 1.68286 2.55913 3.07847 3.41184 3.65455 3.72882 3.97373 4.00884 4.19672 4.28646 4.48005 4.51216 4.55873 4.67813 4.73523 4.75144 4.77342 4.84834 4.89386 5.04213 5.13784 5.21442 5.25911 5.36194 5.49802 5.69184 5.75736 6.11573 6.49841 6.60724 6.86294 7.45119 7.55975 8.94324 Molecular weight = 238.15amu Principal moments of inertia in cm(-1) A = 0.029467 B = 0.007596 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.979619 B = 3685.047154 C = 4235.375595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.286 5.286 4 C -0.033 4.033 5 C -0.026 4.026 6 C 0.132 3.868 7 N -0.544 5.544 8 C 0.057 3.943 9 C 0.173 3.827 10 H 0.054 0.946 11 C -0.157 4.157 12 C -0.508 4.508 13 H 0.028 0.972 14 C 0.023 3.977 15 N -0.953 5.953 16 Si 0.982 3.018 17 H -0.276 1.276 18 H -0.319 1.319 19 H -0.240 1.240 20 N -0.300 5.300 21 N -0.115 5.115 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.111 0.889 25 H 0.106 0.894 26 H 0.138 0.862 27 H 0.220 0.780 28 H 0.051 0.949 29 H 0.104 0.896 30 H 0.024 0.976 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.037 0.963 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.243 -9.731 5.270 21.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.020 4.020 3 N -0.081 5.081 4 C -0.185 4.185 5 C -0.165 4.165 6 C 0.003 3.997 7 N -0.270 5.270 8 C -0.091 4.091 9 C 0.068 3.932 10 H 0.072 0.928 11 C -0.216 4.216 12 C -0.547 4.547 13 H 0.046 0.954 14 C -0.175 4.175 15 N -0.593 5.593 16 Si 0.809 3.191 17 H -0.202 1.202 18 H -0.248 1.248 19 H -0.164 1.164 20 N -0.167 5.167 21 N -0.094 5.094 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.130 0.870 25 H 0.124 0.876 26 H 0.156 0.844 27 H 0.237 0.763 28 H 0.069 0.931 29 H 0.122 0.878 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.795 -10.004 3.940 21.653 hybrid contribution 0.699 0.030 0.606 0.926 sum -18.097 -9.974 4.547 21.158 Atomic orbital electron populations 1.22038 0.91929 1.05028 1.02694 1.22588 0.97534 0.74510 1.07357 1.47801 1.29847 1.12862 1.17635 1.23854 0.99211 0.94933 1.00493 1.22126 1.01657 0.96217 0.96468 1.20375 0.87337 0.94617 0.97408 1.62414 1.07418 1.54228 1.02923 1.21869 0.99841 0.96969 0.90425 1.19747 0.89658 0.89711 0.94116 0.92830 1.22182 1.00315 0.98432 1.00698 1.21125 1.00166 0.95073 1.38302 0.95364 1.25913 0.94318 1.02758 0.94520 1.70110 1.15258 1.27055 1.46880 0.85140 0.76378 0.77457 0.80085 1.20217 1.24800 1.16383 1.74973 1.09999 1.17216 1.14476 1.78076 1.22016 0.93414 1.15936 0.92294 0.92722 0.87026 0.87559 0.84361 0.76310 0.93111 0.87774 0.95738 0.93771 0.93473 0.92021 0.92787 0.94397 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 10.04 71.98 0.72 -1.06 16 2 C 0.10 1.32 7.17 86.38 0.62 1.94 16 3 N -0.29 -7.17 3.44 -347.74 -1.20 -8.36 16 4 C -0.03 -0.88 11.50 83.49 0.96 0.08 16 5 C -0.03 -0.86 5.96 41.60 0.25 -0.61 16 6 C 0.13 4.46 4.97 85.56 0.43 4.89 16 7 N -0.54 -22.94 2.78 -906.03 -2.52 -25.46 16 8 C 0.06 2.53 8.61 127.69 1.10 3.63 16 9 C 0.17 7.78 1.70 44.17 0.08 7.86 16 10 H 0.05 2.34 6.80 -2.39 -0.02 2.32 16 11 C -0.16 -6.11 8.40 71.98 0.60 -5.51 16 12 C -0.51 -28.69 7.76 25.60 0.20 -28.49 16 13 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 14 C 0.02 1.35 5.47 84.66 0.46 1.81 16 15 N -0.95 -60.30 13.96 21.45 0.30 -60.01 16 16 Si 0.98 46.66 26.26 68.60 1.80 48.46 16 17 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 18 H -0.32 -15.30 7.11 99.48 0.71 -14.59 16 19 H -0.24 -10.06 6.52 99.48 0.65 -9.41 16 20 N -0.30 -11.11 11.44 -48.60 -0.56 -11.67 16 21 N -0.12 -3.79 12.91 37.02 0.48 -3.31 16 22 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.05 0.85 8.12 -2.39 -0.02 0.83 16 24 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.14 0.91 8.07 -2.39 -0.02 0.89 16 27 H 0.22 4.08 8.06 -2.91 -0.02 4.06 16 28 H 0.05 1.68 6.83 -2.39 -0.02 1.66 16 29 H 0.10 3.01 8.00 -2.39 -0.02 2.99 16 30 H 0.02 1.01 6.62 -2.39 -0.02 0.99 16 31 H 0.04 2.22 6.99 -2.39 -0.02 2.20 16 32 H 0.05 2.06 6.55 -2.39 -0.02 2.05 16 33 H 0.06 2.01 6.53 -2.39 -0.02 1.99 16 34 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.04 1.54 6.75 -2.39 -0.02 1.52 16 36 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 Total: -1.00 -74.33 291.28 4.72 -69.61 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 1.00 Total: 6.21 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 5.42 Total: -15.48 kcal Atomic # 7 Polarization: -105.31 SS G_CDS: -3.50 Total: -108.81 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.80 Total: 48.46 kcal Total: -74.33 4.72 -69.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887110193.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.502 kcal (2) G-P(sol) polarization free energy of solvation -74.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds