Wall clock time and date at job start Sun Mar 29 2020 22:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50700 * 109.47798 * 185.00026 * 4 2 1 6 6 H 1.08007 * 119.99653 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00569 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00211 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00049 * 0.02562 * 7 5 4 10 10 H 1.48492 * 109.47440 * 89.99537 * 9 7 5 11 11 H 1.48504 * 109.47039 * 209.99968 * 9 7 5 12 12 H 1.48502 * 109.46671 * 329.99509 * 9 7 5 13 13 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 14 14 C 1.47017 * 110.99427 * 306.04447 * 13 2 1 15 15 C 1.53103 * 109.25521 * 182.39053 * 14 13 2 16 16 O 1.43015 * 109.25801 * 303.15179 * 15 14 13 17 17 C 1.43020 * 113.73915 * 58.67089 * 16 15 14 18 18 C 1.52999 * 109.50640 * 181.39065 * 17 16 15 19 19 C 1.47203 * 109.50453 * 61.30721 * 17 16 15 20 20 N 4.86109 * 134.15891 * 256.78360 * 2 1 3 21 21 C 1.47007 * 111.00077 * 69.67646 * 13 2 1 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 26 26 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 27 27 H 0.96996 * 119.99912 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.50427 * 302.32460 * 14 13 2 29 29 H 1.09000 * 109.51019 * 62.41702 * 14 13 2 30 30 H 1.09002 * 109.50255 * 63.08974 * 15 14 13 31 31 H 1.08996 * 109.50749 * 183.21701 * 15 14 13 32 32 H 1.09006 * 109.47024 * 60.00184 * 18 17 16 33 33 H 1.09003 * 109.46846 * 179.97438 * 18 17 16 34 34 H 1.08993 * 109.47359 * 300.00248 * 18 17 16 35 35 H 1.09003 * 109.51122 * 297.54558 * 21 13 2 36 36 H 1.09002 * 109.50869 * 57.67362 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5419 -0.6149 1.3127 6 1 4.0791 -0.0861 0.5391 7 6 4.2304 -1.1926 2.3582 8 7 5.5412 -1.1003 2.4133 9 14 3.3016 -2.1078 3.6958 10 1 3.1709 -3.5379 3.3179 11 1 4.0449 -2.0002 4.9769 12 1 1.9505 -1.5127 3.8559 13 7 2.0197 -0.6924 -1.1995 14 6 1.4339 -2.0364 -1.3080 15 6 2.0151 -2.7430 -2.5356 16 8 1.7669 -1.9487 -3.6986 17 6 2.3240 -0.6334 -3.6272 18 6 1.9730 0.1399 -4.8999 19 6 3.7873 -0.7260 -3.4962 20 7 4.9165 -0.7973 -3.3950 21 6 1.7459 0.0945 -2.4107 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.6054 -0.2618 2.1369 26 1 1.7517 -1.7715 1.2055 27 1 6.0255 -1.5070 3.1487 28 1 1.6705 -2.6100 -0.4118 29 1 0.3520 -1.9546 -1.4127 30 1 3.0896 -2.8729 -2.4059 31 1 1.5416 -3.7177 -2.6527 32 1 0.8894 0.2094 -4.9956 33 1 2.3975 1.1423 -4.8446 34 1 2.3815 -0.3809 -5.7658 35 1 0.6691 0.2105 -2.5338 36 1 2.2103 1.0764 -2.3196 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933606495.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:50 Heat of formation + Delta-G solvation = -31.885348 kcal Electronic energy + Delta-G solvation = -17855.608519 eV Core-core repulsion = 15146.316086 eV Total energy + Delta-G solvation = -2709.292432 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.33368 -38.30367 -37.08867 -34.86865 -34.03893 -32.64400 -29.92006 -29.04823 -26.54849 -24.71619 -24.66498 -23.11118 -20.46543 -18.91954 -18.78246 -17.40147 -17.02596 -16.35445 -16.09584 -15.86502 -15.20092 -15.01563 -14.78110 -14.44143 -13.99160 -13.95968 -13.74377 -13.51446 -13.25104 -13.22070 -12.89279 -12.77881 -12.61723 -12.50411 -12.21672 -11.95676 -11.71625 -11.59930 -11.35872 -11.21473 -10.76125 -10.69430 -8.97099 -8.19977 -6.20174 1.34160 1.36542 1.47498 1.55310 1.77483 2.39139 2.70699 2.81237 2.97148 3.18022 3.66890 3.97757 4.01212 4.20410 4.24652 4.38427 4.48208 4.59768 4.61231 4.69508 4.73337 4.87445 4.90914 4.96163 5.06437 5.15562 5.21403 5.26683 5.31253 5.55443 5.73113 5.90142 6.26179 6.29879 6.47215 6.53009 6.89368 7.40947 8.98053 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027632 B = 0.008160 C = 0.007309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.056451 B = 3430.629494 C = 3829.962557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.101 3.899 3 H 0.062 0.938 4 C -0.004 4.004 5 C -0.489 4.489 6 H 0.025 0.975 7 C -0.009 4.009 8 N -0.963 5.963 9 Si 0.948 3.052 10 H -0.272 1.272 11 H -0.291 1.291 12 H -0.240 1.240 13 N -0.550 5.550 14 C 0.019 3.981 15 C 0.059 3.941 16 O -0.355 6.355 17 C 0.218 3.782 18 C -0.130 4.130 19 C 0.212 3.788 20 N -0.475 5.475 21 C 0.033 3.967 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.020 0.980 27 H 0.259 0.741 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.135 0.865 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.956 0.638 -12.207 20.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.007 4.007 3 H 0.081 0.919 4 C -0.042 4.042 5 C -0.528 4.528 6 H 0.043 0.957 7 C -0.204 4.204 8 N -0.606 5.606 9 Si 0.772 3.228 10 H -0.197 1.197 11 H -0.218 1.218 12 H -0.163 1.163 13 N -0.275 5.275 14 C -0.108 4.108 15 C -0.017 4.017 16 O -0.271 6.271 17 C 0.175 3.825 18 C -0.187 4.187 19 C -0.107 4.107 20 N -0.153 5.153 21 C -0.096 4.096 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.043 0.957 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.153 0.847 32 H 0.131 0.869 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.740 0.352 -12.076 19.058 hybrid contribution -0.131 -0.354 1.223 1.279 sum -14.871 -0.002 -10.853 18.410 Atomic orbital electron populations 1.22406 0.95362 1.02627 1.02953 1.21485 0.93085 0.96928 0.89202 0.91931 1.19641 0.94009 0.96131 0.94408 1.21306 0.92387 1.32410 1.06680 0.95693 1.26061 0.95486 0.97774 1.01046 1.70127 1.08798 1.48100 1.33555 0.85692 0.79870 0.79229 0.77975 1.19713 1.21782 1.16312 1.62174 1.60139 1.02943 1.02259 1.22784 0.98419 0.90790 0.98849 1.22865 0.99354 0.95420 0.84101 1.88097 1.74937 1.23875 1.40193 1.19537 0.77302 0.86047 0.99660 1.21865 1.05679 0.99351 0.91853 1.30505 0.96392 0.92628 0.91138 1.81150 1.15699 1.08094 1.10366 1.22867 1.01482 0.97301 0.87995 0.91726 0.91836 0.90721 0.95747 0.96155 0.93193 0.90890 0.90869 0.95648 0.84692 0.86897 0.88764 0.90433 0.88784 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.34 8.44 71.98 0.61 -3.73 16 2 C 0.10 3.56 2.26 44.91 0.10 3.66 16 3 H 0.06 2.36 8.04 -2.39 -0.02 2.34 16 4 C 0.00 -0.20 3.44 29.85 0.10 -0.10 16 5 C -0.49 -28.54 9.39 25.60 0.24 -28.30 16 6 H 0.02 1.67 7.99 -2.91 -0.02 1.64 16 7 C -0.01 -0.57 5.47 84.65 0.46 -0.10 16 8 N -0.96 -63.76 13.96 21.44 0.30 -63.46 16 9 Si 0.95 45.21 27.47 68.60 1.88 47.09 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 12 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 13 N -0.55 -18.80 4.05 -869.98 -3.52 -22.32 16 14 C 0.02 0.57 4.80 86.32 0.41 0.98 16 15 C 0.06 1.63 6.70 72.02 0.48 2.11 16 16 O -0.35 -8.90 10.26 -148.98 -1.53 -10.43 16 17 C 0.22 5.41 1.05 -12.57 -0.01 5.40 16 18 C -0.13 -1.92 8.81 71.98 0.63 -1.29 16 19 C 0.21 7.45 12.50 89.44 1.12 8.57 16 20 N -0.48 -20.44 18.54 20.01 0.37 -20.07 16 21 C 0.03 0.82 4.05 86.32 0.35 1.17 16 22 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 1.49 6.38 -2.39 -0.02 1.47 16 24 H 0.07 1.45 6.73 -2.38 -0.02 1.44 16 25 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 26 H 0.02 0.88 5.72 -2.39 -0.01 0.87 16 27 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 28 H 0.07 2.49 6.28 -2.39 -0.01 2.48 16 29 H 0.07 1.71 6.37 -2.39 -0.02 1.70 16 30 H 0.03 0.89 7.23 -2.39 -0.02 0.87 16 31 H 0.14 2.77 8.14 -2.39 -0.02 2.76 16 32 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.73 6.72 -2.39 -0.02 1.71 16 36 H 0.09 2.24 8.09 -2.39 -0.02 2.22 16 Total: -1.00 -77.67 287.68 3.01 -74.66 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.01 Total: 6.16 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 4.50 Total: -11.62 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -2.85 Total: -105.85 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -1.53 Total: -10.43 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.88 Total: 47.09 kcal Total: -77.67 3.01 -74.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933606495.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.772 kcal (2) G-P(sol) polarization free energy of solvation -77.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds