Wall clock time and date at job start Sun Mar 29 2020 21:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 115.55766 * 2 1 4 4 C 1.53002 * 117.49773 * 214.31684 * 2 1 3 5 5 C 1.53000 * 60.02940 * 252.51785 * 4 2 1 6 6 H 1.09007 * 117.49605 * 107.50099 * 5 4 2 7 7 C 1.50690 * 117.50063 * 252.49714 * 5 4 2 8 8 O 1.21283 * 120.00042 * 68.61154 * 7 5 4 9 9 N 1.34777 * 120.00347 * 248.60878 * 7 5 4 10 10 C 1.46501 * 120.00401 * 179.97438 * 9 7 5 11 11 H 1.09001 * 112.84603 * 23.79998 * 10 9 7 12 12 C 1.53780 * 113.61631 * 155.00275 * 10 9 7 13 13 C 1.53788 * 87.08209 * 139.98132 * 12 10 9 14 14 H 1.08993 * 113.61410 * 220.02016 * 13 12 10 15 15 N 1.46506 * 113.61239 * 89.11412 * 13 12 10 16 16 C 1.36933 * 119.99722 * 154.99748 * 15 13 12 17 17 H 1.08006 * 119.99960 * 0.02562 * 16 15 13 18 18 C 1.38807 * 119.99929 * 179.97438 * 16 15 13 19 19 N 1.31620 * 120.00050 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00075 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46967 * 89.99987 * 20 18 16 22 22 H 1.48495 * 109.47135 * 210.00027 * 20 18 16 23 23 H 1.48500 * 109.47209 * 330.00048 * 20 18 16 24 24 C 1.53779 * 113.61490 * 252.50221 * 10 9 7 25 25 H 1.09005 * 109.47034 * 154.29268 * 1 2 3 26 26 H 1.08996 * 109.47323 * 274.29157 * 1 2 3 27 27 H 1.08997 * 109.47719 * 34.29727 * 1 2 3 28 28 H 1.09002 * 117.49918 * 145.01819 * 4 2 1 29 29 H 1.09002 * 117.49754 * 0.02562 * 4 2 1 30 30 H 0.97000 * 120.00030 * 0.02562 * 9 7 5 31 31 H 1.09005 * 113.61397 * 254.53084 * 12 10 9 32 32 H 1.09000 * 113.61162 * 25.43248 * 12 10 9 33 33 H 0.97005 * 119.99868 * 335.00244 * 15 13 12 34 34 H 0.96999 * 120.00364 * 180.02562 * 19 18 16 35 35 H 1.09006 * 113.61651 * 334.56284 * 24 10 9 36 36 H 1.09003 * 113.61763 * 105.46932 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2367 -1.1218 0.7649 6 1 1.6116 -1.8598 1.2678 7 6 3.5297 -0.7828 1.4607 8 8 3.9726 0.3447 1.4015 9 7 4.1939 -1.7325 2.1488 10 6 5.4512 -1.4030 2.8247 11 1 5.5409 -0.3420 3.0580 12 6 5.7713 -2.3244 4.0136 13 6 7.2350 -2.2923 3.5431 14 1 7.7396 -3.2553 3.6201 15 7 8.0129 -1.1931 4.1201 16 6 9.3735 -1.3014 4.2305 17 1 9.8732 -2.1970 3.8917 18 6 10.1106 -0.2597 4.7767 19 7 11.4185 -0.3636 4.8823 20 14 9.2465 1.2895 5.3619 21 1 8.8700 1.1368 6.7903 22 1 10.1586 2.4517 5.2120 23 1 8.0239 1.5117 4.5488 24 6 6.6936 -1.9913 2.1355 25 1 -0.3633 -0.9260 -0.4458 26 1 -0.3634 0.0769 1.0247 27 1 -0.3634 0.8489 -0.5790 28 1 3.1715 -0.8751 -1.2684 29 1 1.6112 -1.8581 -1.2688 30 1 3.8398 -2.6343 2.1958 31 1 5.6143 -1.8547 4.9847 32 1 5.3102 -3.3093 3.9391 33 1 7.5641 -0.3886 4.4241 34 1 11.9336 0.3641 5.2643 35 1 6.4848 -2.8852 1.5477 36 1 7.2814 -1.2527 1.5904 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019957771.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:30 Heat of formation + Delta-G solvation = -8.139160 kcal Electronic energy + Delta-G solvation = -16604.961479 eV Core-core repulsion = 13896.698759 eV Total energy + Delta-G solvation = -2708.262720 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30295 -39.82239 -37.63423 -35.81750 -34.27474 -32.33539 -29.63364 -26.72294 -26.55568 -25.16288 -23.64254 -21.85614 -21.12500 -20.42380 -19.63111 -18.35569 -17.54429 -16.59361 -16.22857 -16.07581 -15.75568 -15.04605 -14.78652 -14.57832 -14.24910 -13.85214 -13.80343 -13.64005 -13.34620 -12.92787 -12.91674 -12.56032 -12.31745 -12.25128 -11.88380 -11.80956 -11.40571 -11.32479 -11.05727 -10.98130 -10.72626 -10.01089 -9.34897 -8.07134 -5.40462 1.33984 1.36481 1.42694 1.46419 2.16917 2.43244 2.85520 3.22780 3.45701 3.62905 3.74018 3.78474 3.79866 3.90211 4.15348 4.22516 4.25909 4.41903 4.71920 4.78247 4.81185 4.87258 4.94874 4.96381 5.05150 5.09535 5.18568 5.21942 5.25916 5.42256 5.60426 5.76088 6.18653 6.60399 7.02817 7.28970 7.79942 7.96116 9.14164 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041052 B = 0.004760 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.901155 B = 5880.886503 C = 6222.058429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.135 4.135 3 H 0.084 0.916 4 C -0.136 4.136 5 C -0.190 4.190 6 H 0.157 0.843 7 C 0.529 3.471 8 O -0.598 6.598 9 N -0.696 5.696 10 C 0.125 3.875 11 H 0.072 0.928 12 C -0.136 4.136 13 C 0.152 3.848 14 H 0.079 0.921 15 N -0.738 5.738 16 C -0.232 4.232 17 H 0.065 0.935 18 C -0.059 4.059 19 N -0.980 5.980 20 Si 0.948 3.052 21 H -0.272 1.272 22 H -0.294 1.294 23 H -0.265 1.265 24 C -0.172 4.172 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.137 0.863 30 H 0.420 0.580 31 H 0.070 0.930 32 H 0.129 0.871 33 H 0.363 0.637 34 H 0.259 0.741 35 H 0.107 0.893 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.430 -6.358 -8.781 27.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.154 4.154 3 H 0.103 0.897 4 C -0.173 4.173 5 C -0.210 4.210 6 H 0.175 0.825 7 C 0.318 3.682 8 O -0.479 6.479 9 N -0.347 5.347 10 C 0.020 3.980 11 H 0.091 0.909 12 C -0.175 4.175 13 C 0.042 3.958 14 H 0.097 0.903 15 N -0.379 5.379 16 C -0.363 4.363 17 H 0.083 0.917 18 C -0.251 4.251 19 N -0.630 5.630 20 Si 0.776 3.224 21 H -0.197 1.197 22 H -0.221 1.221 23 H -0.191 1.191 24 C -0.214 4.214 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.155 0.845 30 H 0.258 0.742 31 H 0.089 0.911 32 H 0.147 0.853 33 H 0.196 0.804 34 H 0.068 0.932 35 H 0.125 0.875 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -24.892 -5.673 -8.803 27.006 hybrid contribution 0.428 1.056 0.481 1.237 sum -24.464 -4.617 -8.322 26.250 Atomic orbital electron populations 1.21384 0.89946 1.03425 1.02589 1.22419 0.96817 0.93962 1.02191 0.89731 1.23193 1.02705 1.01481 0.89958 1.22389 0.96074 1.06190 0.96386 0.82525 1.20510 0.85591 0.84187 0.77954 1.90694 1.70350 1.23709 1.63192 1.45806 1.23330 1.13812 1.51747 1.22281 0.82803 0.98805 0.94146 0.90945 1.23754 0.95609 1.01128 0.97009 1.21218 0.91117 0.91282 0.92210 0.90297 1.42573 1.03521 1.17668 1.74167 1.19109 0.83009 1.01561 1.32639 0.91673 1.25419 0.95921 1.01498 1.02276 1.69856 1.06186 1.34313 1.52692 0.85520 0.78012 0.79978 0.78939 1.19744 1.22100 1.19055 1.24180 0.96722 1.01173 0.99344 0.90316 0.91818 0.91384 0.90047 0.84486 0.74207 0.91134 0.85263 0.80385 0.93235 0.87504 0.94521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 10.19 71.98 0.73 -0.57 16 2 C -0.13 -2.40 5.92 -10.77 -0.06 -2.46 16 3 H 0.08 2.06 7.67 -2.39 -0.02 2.04 16 4 C -0.14 -2.03 9.88 30.60 0.30 -1.73 16 5 C -0.19 -3.27 5.91 -11.52 -0.07 -3.34 16 6 H 0.16 1.59 8.14 -2.38 -0.02 1.57 16 7 C 0.53 14.36 7.61 87.65 0.67 15.02 16 8 O -0.60 -23.10 15.86 -3.04 -0.05 -23.14 16 9 N -0.70 -15.90 5.35 -440.05 -2.36 -18.25 16 10 C 0.13 3.78 4.12 45.52 0.19 3.97 16 11 H 0.07 2.79 7.46 -2.39 -0.02 2.77 16 12 C -0.14 -3.60 7.58 31.12 0.24 -3.36 16 13 C 0.15 5.52 4.56 45.52 0.21 5.73 16 14 H 0.08 2.84 8.10 -2.39 -0.02 2.82 16 15 N -0.74 -35.15 5.11 -320.43 -1.64 -36.79 16 16 C -0.23 -13.42 10.45 84.03 0.88 -12.54 16 17 H 0.07 4.04 8.06 -2.91 -0.02 4.02 16 18 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 19 N -0.98 -63.71 13.97 21.65 0.30 -63.41 16 20 Si 0.95 47.45 27.74 68.60 1.90 49.35 16 21 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.29 -14.88 7.11 99.48 0.71 -14.18 16 23 H -0.27 -12.65 6.52 99.48 0.65 -12.00 16 24 C -0.17 -5.67 7.68 31.12 0.24 -5.43 16 25 H 0.08 0.57 7.90 -2.38 -0.02 0.55 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.14 1.14 8.05 -2.39 -0.02 1.12 16 30 H 0.42 5.89 8.73 -92.71 -0.81 5.08 16 31 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.13 2.30 8.12 -2.39 -0.02 2.28 16 33 H 0.36 17.14 5.76 -92.70 -0.53 16.61 16 34 H 0.26 16.03 8.31 -92.71 -0.77 15.25 16 35 H 0.11 2.79 8.14 -2.38 -0.02 2.77 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -77.01 303.32 1.62 -75.39 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -0.32 Total: 24.67 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 3.79 Total: -7.82 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -3.69 Total: -118.44 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.05 Total: -23.14 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 1.90 Total: 49.35 kcal Total: -77.01 1.62 -75.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019957771.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.248 kcal (2) G-P(sol) polarization free energy of solvation -77.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds