Wall clock time and date at job start Sun Mar 29 2020 22:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21275 * 120.00123 * 2 1 4 4 N 1.34782 * 119.99707 * 179.71541 * 2 1 3 5 5 C 1.44501 * 116.63352 * 354.51591 * 4 2 1 6 6 C 1.51637 * 112.65328 * 154.59756 * 5 4 2 7 7 C 1.51323 * 111.97887 * 42.76221 * 6 5 4 8 8 C 1.50714 * 113.54338 * 304.60589 * 7 6 5 9 9 H 1.08998 * 109.33394 * 169.06634 * 8 7 6 10 10 C 1.54180 * 110.51064 * 289.39672 * 8 7 6 11 11 N 1.46931 * 106.26456 * 151.09986 * 10 8 7 12 12 C 1.36933 * 125.37645 * 162.12910 * 11 10 8 13 13 H 1.07997 * 119.99914 * 5.83612 * 12 11 10 14 14 C 1.38811 * 119.99988 * 185.84300 * 12 11 10 15 15 N 1.31624 * 119.99741 * 7.38608 * 14 12 11 16 16 Si 1.86796 * 120.00069 * 187.38789 * 14 12 11 17 17 H 1.48502 * 109.47095 * 84.99274 * 16 14 12 18 18 H 1.48505 * 109.47363 * 204.98911 * 16 14 12 19 19 H 1.48499 * 109.47143 * 324.98798 * 16 14 12 20 20 C 1.46820 * 109.24489 * 342.14785 * 11 10 8 21 21 C 1.44101 * 116.62394 * 174.25580 * 4 2 1 22 22 H 1.08997 * 109.10677 * 73.87624 * 21 4 2 23 23 H 1.08999 * 109.47298 * 0.02562 * 1 2 3 24 24 H 1.09009 * 109.47018 * 120.00402 * 1 2 3 25 25 H 1.08999 * 109.47355 * 240.00082 * 1 2 3 26 26 H 1.09002 * 108.84802 * 275.42141 * 5 4 2 27 27 H 1.09004 * 108.85000 * 33.78308 * 5 4 2 28 28 H 1.09003 * 108.97413 * 163.40404 * 6 5 4 29 29 H 1.08998 * 108.97701 * 282.11378 * 6 5 4 30 30 H 1.09000 * 108.67437 * 65.65820 * 7 6 5 31 31 H 1.08996 * 108.66843 * 183.69513 * 7 6 5 32 32 H 1.09002 * 110.09513 * 270.29541 * 10 8 7 33 33 H 1.08994 * 110.09902 * 31.89384 * 10 8 7 34 34 H 0.97000 * 119.99914 * 180.02562 * 15 14 12 35 35 H 1.08995 * 109.84262 * 120.40293 * 20 11 10 36 36 H 1.09001 * 109.83864 * 241.31215 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0058 5 6 1.3912 -2.3705 0.1352 6 6 2.0758 -3.5853 -0.4606 7 6 3.5475 -3.6338 -0.1119 8 6 4.3008 -2.3892 -0.5055 9 1 5.2939 -2.4114 -0.0568 10 6 4.4367 -2.3022 -2.0389 11 7 4.5042 -0.8713 -2.3655 12 6 4.9652 -0.3480 -3.5439 13 1 5.2291 -1.0047 -4.3597 14 6 5.0934 1.0264 -3.6899 15 7 4.9125 1.8180 -2.6540 16 14 5.5227 1.7526 -5.3566 17 1 4.2828 1.9266 -6.1550 18 1 6.1789 3.0714 -5.1678 19 1 6.4478 0.8374 -6.0719 20 6 3.9998 -0.0911 -1.2286 21 6 3.6138 -1.0864 -0.1235 22 1 4.0369 -0.7268 0.8144 23 1 -0.3634 1.0276 -0.0005 24 1 -0.3633 -0.5139 -0.8900 25 1 -0.3634 -0.5138 0.8900 26 1 1.2025 -2.5558 1.1927 27 1 0.4367 -2.2213 -0.3697 28 1 1.5919 -4.4858 -0.0823 29 1 1.9690 -3.5561 -1.5449 30 1 3.6467 -3.7761 0.9642 31 1 3.9981 -4.4870 -0.6188 32 1 5.3486 -2.8037 -2.3631 33 1 3.5689 -2.7553 -2.5181 34 1 5.0017 2.7785 -2.7561 35 1 4.7771 0.5827 -0.8683 36 1 3.1247 0.4830 -1.5332 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049936877.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:38 Heat of formation + Delta-G solvation = -24.974354 kcal Electronic energy + Delta-G solvation = -18322.602295 eV Core-core repulsion = 15613.609546 eV Total energy + Delta-G solvation = -2708.992749 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.88804 -39.14514 -37.03014 -34.72478 -33.78659 -31.86900 -30.44322 -28.40868 -27.32671 -25.51320 -23.42240 -22.65974 -20.83786 -19.30833 -18.73185 -17.81590 -17.12067 -17.07684 -16.23343 -15.91970 -15.69245 -15.10050 -14.72060 -14.34156 -14.19046 -13.94930 -13.68053 -13.32935 -13.15874 -12.88928 -12.86247 -12.58992 -12.33750 -12.09898 -11.93771 -11.78531 -11.59103 -11.42732 -11.32637 -10.79953 -10.42958 -9.38790 -8.86330 -7.80290 -5.22993 1.39714 1.44153 1.52480 1.74605 2.24393 2.47957 3.31587 3.55581 3.69509 3.86393 3.88455 4.07295 4.09533 4.14108 4.47073 4.53038 4.61790 4.65226 4.72993 4.76079 4.85178 4.92466 4.97312 5.10718 5.17154 5.21968 5.39953 5.42342 5.49596 5.53977 5.82352 6.02538 6.22145 6.56091 7.07095 7.38214 7.79418 8.42476 9.24486 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.026946 B = 0.009371 C = 0.007704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.864206 B = 2987.185618 C = 3633.413358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.475 3.525 3 O -0.587 6.587 4 N -0.592 5.592 5 C 0.102 3.898 6 C -0.126 4.126 7 C -0.098 4.098 8 C -0.089 4.089 9 H 0.079 0.921 10 C 0.136 3.864 11 N -0.630 5.630 12 C -0.248 4.248 13 H 0.085 0.915 14 C -0.072 4.072 15 N -0.945 5.945 16 Si 0.981 3.019 17 H -0.286 1.286 18 H -0.296 1.296 19 H -0.262 1.262 20 C 0.182 3.818 21 C 0.144 3.856 22 H 0.044 0.956 23 H 0.080 0.920 24 H 0.104 0.896 25 H 0.123 0.877 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.118 0.882 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.036 0.964 33 H 0.027 0.973 34 H 0.242 0.758 35 H 0.010 0.990 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.115 -14.318 7.450 19.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.265 3.735 3 O -0.467 6.467 4 N -0.325 5.325 5 C -0.019 4.019 6 C -0.164 4.164 7 C -0.136 4.136 8 C -0.109 4.109 9 H 0.097 0.903 10 C 0.012 3.988 11 N -0.357 5.357 12 C -0.377 4.377 13 H 0.102 0.898 14 C -0.265 4.265 15 N -0.593 5.593 16 Si 0.808 3.192 17 H -0.213 1.213 18 H -0.223 1.223 19 H -0.187 1.187 20 C 0.056 3.944 21 C 0.038 3.962 22 H 0.062 0.938 23 H 0.099 0.901 24 H 0.123 0.877 25 H 0.142 0.858 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.136 0.864 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.028 0.972 36 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -9.719 -13.668 7.385 18.325 hybrid contribution 0.735 1.267 -0.944 1.742 sum -8.985 -12.401 6.441 16.613 Atomic orbital electron populations 1.21957 0.87937 1.05589 1.06202 1.21960 0.92840 0.83217 0.75483 1.90785 1.72016 1.33736 1.50140 1.46917 1.05624 1.07787 1.72156 1.21276 0.94565 0.83512 1.02512 1.21190 0.95435 0.98480 1.01279 1.20514 0.95406 0.95140 1.02528 1.21315 0.99694 0.94180 0.95705 0.90308 1.21631 0.98165 0.85085 0.93965 1.44757 1.74240 1.01915 1.14764 1.19437 1.36607 0.90928 0.90735 0.89771 1.25826 1.02570 0.96807 1.01305 1.70314 1.56525 1.02578 1.29851 0.85069 0.77779 0.77419 0.78917 1.21260 1.22273 1.18685 1.21219 0.96108 0.91210 0.85842 1.20580 0.81260 0.96965 0.97376 0.93829 0.90071 0.87729 0.85825 0.89705 0.88462 0.86385 0.92864 0.90155 0.89620 0.94539 0.95504 0.94837 0.97184 0.96170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 8.67 71.24 0.62 -3.09 16 2 C 0.47 18.06 6.89 87.66 0.60 18.67 16 3 O -0.59 -30.44 14.40 -3.02 -0.04 -30.48 16 4 N -0.59 -20.13 3.09 -811.20 -2.51 -22.64 16 5 C 0.10 2.10 5.69 86.30 0.49 2.59 16 6 C -0.13 -2.34 5.83 29.60 0.17 -2.17 16 7 C -0.10 -2.16 5.17 29.30 0.15 -2.01 16 8 C -0.09 -3.07 3.05 -11.41 -0.03 -3.10 16 9 H 0.08 2.68 8.14 -2.39 -0.02 2.67 16 10 C 0.14 5.77 6.65 86.70 0.58 6.35 16 11 N -0.63 -35.31 3.39 -696.55 -2.36 -37.67 16 12 C -0.25 -14.98 10.24 84.03 0.86 -14.12 16 13 H 0.08 4.78 7.84 -2.91 -0.02 4.75 16 14 C -0.07 -4.45 5.45 84.86 0.46 -3.99 16 15 N -0.94 -63.48 10.41 21.65 0.23 -63.25 16 16 Si 0.98 49.12 29.56 68.60 2.03 51.15 16 17 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 18 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 19 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 20 C 0.18 10.30 4.20 86.54 0.36 10.67 16 21 C 0.14 6.03 3.09 45.38 0.14 6.17 16 22 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.08 2.02 8.12 -2.39 -0.02 2.00 16 24 H 0.10 2.05 7.39 -2.38 -0.02 2.03 16 25 H 0.12 1.83 7.91 -2.39 -0.02 1.82 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.10 1.56 6.08 -2.39 -0.01 1.55 16 28 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 1.18 7.00 -2.39 -0.02 1.17 16 30 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 1.62 8.10 -2.39 -0.02 1.60 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.03 1.09 6.69 -2.39 -0.02 1.08 16 34 H 0.24 15.95 8.31 -92.71 -0.77 15.18 16 35 H 0.01 0.67 6.86 -2.39 -0.02 0.65 16 36 H 0.02 1.30 5.19 -2.39 -0.01 1.29 16 Total: -1.00 -85.64 275.45 2.80 -82.84 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.06 Total: 4.08 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 4.40 Total: 15.97 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -4.64 Total: -123.56 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.04 Total: -30.48 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 2.03 Total: 51.15 kcal Total: -85.64 2.80 -82.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049936877.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.864 kcal (2) G-P(sol) polarization free energy of solvation -85.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds