Wall clock time and date at job start Sun Mar 29 2020 23:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47193 * 2 1 4 4 C 1.52997 * 109.46884 * 119.99898 * 2 1 3 5 5 N 1.46908 * 109.46983 * 179.35363 * 4 2 1 6 6 C 1.46900 * 110.99934 * 156.86572 * 5 4 2 7 7 C 1.50698 * 109.47121 * 288.19279 * 6 5 4 8 8 H 1.08003 * 120.00156 * 4.89989 * 7 6 5 9 9 C 1.37883 * 119.99942 * 184.90383 * 7 6 5 10 10 N 1.31510 * 119.99609 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99947 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47256 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.46722 * 119.99652 * 11 9 7 14 14 H 1.48501 * 109.46995 * 239.99796 * 11 9 7 15 15 C 1.46901 * 111.00031 * 280.82363 * 5 4 2 16 16 C 1.50703 * 109.47185 * 78.32100 * 15 5 4 17 17 N 1.33233 * 125.52557 * 254.96026 * 16 15 5 18 18 C 1.30833 * 109.83120 * 180.26489 * 17 16 15 19 19 N 1.34432 * 108.07386 * 359.97438 * 18 17 16 20 20 H 0.97005 * 126.82160 * 180.02562 * 19 18 17 21 21 N 1.30716 * 125.52267 * 75.27197 * 16 15 5 22 22 H 1.08997 * 109.47128 * 300.00417 * 1 2 3 23 23 H 1.09006 * 109.47203 * 59.99782 * 1 2 3 24 24 H 1.09002 * 109.47469 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46719 * 239.99862 * 2 1 3 26 26 H 1.08992 * 109.47372 * 64.94345 * 3 2 1 27 27 H 1.08998 * 109.47257 * 184.94945 * 3 2 1 28 28 H 1.08998 * 109.46990 * 304.94871 * 3 2 1 29 29 H 1.09000 * 109.47353 * 59.35973 * 4 2 1 30 30 H 1.09001 * 109.47585 * 299.35431 * 4 2 1 31 31 H 1.09000 * 109.47204 * 48.18982 * 6 5 4 32 32 H 1.09003 * 109.46957 * 168.19025 * 6 5 4 33 33 H 0.97000 * 119.99907 * 180.02562 * 10 9 7 34 34 H 1.08998 * 109.47144 * 318.31968 * 15 5 4 35 35 H 1.09006 * 109.46612 * 198.31932 * 15 5 4 36 36 H 1.07999 * 125.96658 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5089 -0.7348 1.2415 6 6 4.0410 -0.8985 2.6009 7 6 3.8228 0.3716 3.3821 8 1 3.2678 1.1873 2.9426 9 6 4.3316 0.4923 4.6579 10 7 5.0070 -0.5011 5.1931 11 14 4.0617 2.0670 5.6260 12 1 3.2772 3.0243 4.8053 13 1 3.3184 1.7592 6.8741 14 1 5.3753 2.6693 5.9677 15 6 4.0210 -1.7808 0.3461 16 6 3.9293 -1.3086 -1.0821 17 7 3.0307 -1.7178 -1.9766 18 6 3.2355 -1.1147 -3.1194 19 7 4.2889 -0.2922 -2.9740 20 1 4.6735 0.2853 -3.6519 21 7 4.7221 -0.4354 -1.6457 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.7508 1.9301 0.9309 27 1 3.1264 1.4438 -0.0887 28 1 1.6061 1.9813 -0.8423 29 1 1.6672 -1.7455 1.2551 30 1 1.6861 -0.2008 2.1392 31 1 3.5266 -1.7223 3.0957 32 1 5.1082 -1.1148 2.5497 33 1 5.3647 -0.4163 6.0907 34 1 3.4269 -2.6864 0.4682 35 1 5.0615 -1.9926 0.5927 36 1 2.6590 -1.2533 -4.0220 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118557452.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:27 Heat of formation + Delta-G solvation = 88.177245 kcal Electronic energy + Delta-G solvation = -17617.893657 eV Core-core repulsion = 14946.100281 eV Total energy + Delta-G solvation = -2671.793376 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.149 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.90433 -37.38915 -33.98454 -32.81837 -32.05428 -30.96149 -27.63584 -26.55346 -26.26394 -24.06947 -22.47661 -20.94243 -19.88559 -19.21103 -18.12641 -16.25145 -15.67975 -15.09278 -14.63964 -14.39837 -13.95530 -13.80180 -13.32309 -12.89584 -12.31494 -12.12888 -11.84372 -11.69254 -11.40009 -11.27564 -10.94767 -10.78507 -10.64023 -10.48002 -10.26429 -10.06743 -9.80493 -9.68038 -9.40272 -9.31018 -9.05149 -8.38476 -7.22343 -5.97415 -3.97338 1.86617 2.88882 3.13651 3.34803 3.42170 3.47648 4.31775 4.49343 4.96834 5.01315 5.26572 5.39539 5.54039 5.60258 5.85292 5.99392 6.05942 6.11173 6.20885 6.40474 6.41366 6.49108 6.55375 6.64446 6.68407 6.71529 7.06924 7.08917 7.20570 7.32053 7.36986 7.87224 8.12877 8.24838 8.37930 8.58063 9.10396 9.66089 11.13498 Molecular weight = 238.15amu Principal moments of inertia in cm(-1) A = 0.028513 B = 0.007148 C = 0.006536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.782555 B = 3916.134918 C = 4282.844477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.128 4.128 4 C 0.070 3.930 5 N -0.525 5.525 6 C 0.195 3.805 7 C -0.499 4.499 8 H 0.064 0.936 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.896 3.104 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.138 3.862 16 C 0.255 3.745 17 N -0.539 5.539 18 C 0.246 3.754 19 N -0.494 5.494 20 H 0.436 0.564 21 N -0.292 5.292 22 H 0.049 0.951 23 H 0.043 0.957 24 H 0.048 0.952 25 H 0.085 0.915 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.026 0.974 29 H 0.022 0.978 30 H 0.080 0.920 31 H -0.009 1.009 32 H 0.035 0.965 33 H 0.260 0.740 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.925 -0.744 -15.862 16.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.186 4.186 4 C -0.058 4.058 5 N -0.250 5.250 6 C 0.070 3.930 7 C -0.537 4.537 8 H 0.082 0.918 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.724 3.276 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.211 1.211 15 C 0.007 3.993 16 C -0.028 4.028 17 N -0.269 5.269 18 C -0.053 4.053 19 N -0.212 5.212 20 H 0.281 0.719 21 N -0.120 5.120 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.103 0.897 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.098 0.902 31 H 0.009 0.991 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.335 -0.268 -15.362 15.964 hybrid contribution -0.282 0.488 0.144 0.582 sum -4.617 0.219 -15.218 15.905 Atomic orbital electron populations 1.21759 0.96497 1.00820 1.00695 1.21455 0.94066 0.97156 1.00158 1.21612 1.02119 0.95287 0.99534 1.22119 0.88022 0.97682 0.98024 1.61910 1.07107 1.43837 1.12155 1.19786 0.95254 0.96593 0.81340 1.21182 1.33773 1.00580 0.98212 0.91758 1.24964 0.95395 0.96565 0.97707 1.69963 1.36912 1.31377 1.15735 0.86475 0.77841 0.83540 0.79774 1.19721 1.21189 1.21095 1.20391 1.01807 0.93314 0.83777 1.24385 0.88974 0.92109 0.97367 1.70389 1.27335 1.29269 0.99873 1.25941 0.90327 0.90146 0.98881 1.48215 1.25946 1.35685 1.11340 0.71919 1.78172 1.23748 1.21439 0.88680 0.93154 0.93764 0.93293 0.89685 0.93253 0.91539 0.95491 0.95941 0.90162 0.99102 0.94727 0.93057 0.92612 0.89159 0.76886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.19 37.16 0.34 -1.77 16 2 C -0.11 -1.92 2.64 -90.62 -0.24 -2.16 16 3 C -0.13 -2.35 8.97 37.16 0.33 -2.01 16 4 C 0.07 1.41 4.26 -3.82 -0.02 1.40 16 5 N -0.53 -11.49 3.71 -237.51 -0.88 -12.37 16 6 C 0.19 5.05 4.71 -4.98 -0.02 5.03 16 7 C -0.50 -14.03 8.39 -34.44 -0.29 -14.32 16 8 H 0.06 1.82 7.58 -52.48 -0.40 1.42 16 9 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 11 Si 0.90 21.96 29.54 -169.99 -5.02 16.93 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.14 2.66 5.65 -4.97 -0.03 2.63 16 16 C 0.25 4.46 5.82 -156.86 -0.91 3.55 16 17 N -0.54 -8.26 9.19 -11.98 -0.11 -8.37 16 18 C 0.25 2.69 13.07 -90.65 -1.18 1.50 16 19 N -0.49 -5.71 7.45 29.53 0.22 -5.49 16 20 H 0.44 3.27 8.96 -182.33 -1.63 1.64 16 21 N -0.29 -4.97 12.80 32.42 0.41 -4.55 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.09 1.49 3.96 -51.93 -0.21 1.28 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 1.37 7.78 -51.93 -0.40 0.97 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.02 0.44 7.63 -51.93 -0.40 0.05 16 30 H 0.08 1.78 6.95 -51.93 -0.36 1.42 16 31 H -0.01 -0.24 8.05 -51.93 -0.42 -0.66 16 32 H 0.03 0.96 7.66 -51.93 -0.40 0.56 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.06 1.02 7.64 -51.93 -0.40 0.63 16 35 H 0.09 1.73 7.60 -51.93 -0.39 1.34 16 36 H 0.21 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 296.32 15.07 4.47 4.47 Total: -1.00 -32.77 296.32 -8.97 -41.73 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -6.68 Total: -1.58 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.12 Total: -4.70 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.38 Total: -56.86 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.77 -8.97 -41.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118557452.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.910 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds