Wall clock time and date at job start Sun Mar 29 2020 23:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47193 * 2 1 4 4 C 1.52997 * 109.46884 * 119.99898 * 2 1 3 5 5 N 1.46908 * 109.46983 * 179.35363 * 4 2 1 6 6 C 1.46900 * 110.99934 * 156.86572 * 5 4 2 7 7 C 1.50698 * 109.47121 * 288.19279 * 6 5 4 8 8 H 1.08003 * 120.00156 * 4.89989 * 7 6 5 9 9 C 1.37883 * 119.99942 * 184.90383 * 7 6 5 10 10 N 1.31510 * 119.99609 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99947 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47256 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.46722 * 119.99652 * 11 9 7 14 14 H 1.48501 * 109.46995 * 239.99796 * 11 9 7 15 15 C 1.46901 * 111.00031 * 280.82363 * 5 4 2 16 16 C 1.50703 * 109.47185 * 78.32100 * 15 5 4 17 17 N 1.33233 * 125.52557 * 254.96026 * 16 15 5 18 18 C 1.30833 * 109.83120 * 180.26489 * 17 16 15 19 19 N 1.34432 * 108.07386 * 359.97438 * 18 17 16 20 20 H 0.97005 * 126.82160 * 180.02562 * 19 18 17 21 21 N 1.30716 * 125.52267 * 75.27197 * 16 15 5 22 22 H 1.08997 * 109.47128 * 300.00417 * 1 2 3 23 23 H 1.09006 * 109.47203 * 59.99782 * 1 2 3 24 24 H 1.09002 * 109.47469 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46719 * 239.99862 * 2 1 3 26 26 H 1.08992 * 109.47372 * 64.94345 * 3 2 1 27 27 H 1.08998 * 109.47257 * 184.94945 * 3 2 1 28 28 H 1.08998 * 109.46990 * 304.94871 * 3 2 1 29 29 H 1.09000 * 109.47353 * 59.35973 * 4 2 1 30 30 H 1.09001 * 109.47585 * 299.35431 * 4 2 1 31 31 H 1.09000 * 109.47204 * 48.18982 * 6 5 4 32 32 H 1.09003 * 109.46957 * 168.19025 * 6 5 4 33 33 H 0.97000 * 119.99907 * 180.02562 * 10 9 7 34 34 H 1.08998 * 109.47144 * 318.31968 * 15 5 4 35 35 H 1.09006 * 109.46612 * 198.31932 * 15 5 4 36 36 H 1.07999 * 125.96658 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5089 -0.7348 1.2415 6 6 4.0410 -0.8985 2.6009 7 6 3.8228 0.3716 3.3821 8 1 3.2678 1.1873 2.9426 9 6 4.3316 0.4923 4.6579 10 7 5.0070 -0.5011 5.1931 11 14 4.0617 2.0670 5.6260 12 1 3.2772 3.0243 4.8053 13 1 3.3184 1.7592 6.8741 14 1 5.3753 2.6693 5.9677 15 6 4.0210 -1.7808 0.3461 16 6 3.9293 -1.3086 -1.0821 17 7 3.0307 -1.7178 -1.9766 18 6 3.2355 -1.1147 -3.1194 19 7 4.2889 -0.2922 -2.9740 20 1 4.6735 0.2853 -3.6519 21 7 4.7221 -0.4354 -1.6457 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.7508 1.9301 0.9309 27 1 3.1264 1.4438 -0.0887 28 1 1.6061 1.9813 -0.8423 29 1 1.6672 -1.7455 1.2551 30 1 1.6861 -0.2008 2.1392 31 1 3.5266 -1.7223 3.0957 32 1 5.1082 -1.1148 2.5497 33 1 5.3647 -0.4163 6.0907 34 1 3.4269 -2.6864 0.4682 35 1 5.0615 -1.9926 0.5927 36 1 2.6590 -1.2533 -4.0220 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118557452.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:27 Heat of formation + Delta-G solvation = 66.475193 kcal Electronic energy + Delta-G solvation = -17618.834729 eV Core-core repulsion = 14946.100281 eV Total energy + Delta-G solvation = -2672.734448 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.149 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.00749 -39.02985 -35.60025 -34.62134 -33.43110 -32.19349 -29.50829 -27.89896 -27.87293 -25.90393 -23.59259 -22.68908 -21.20547 -20.68835 -19.13800 -18.39658 -17.15317 -16.51772 -16.33896 -15.74963 -15.44649 -15.35312 -14.90501 -14.34394 -14.13021 -13.76715 -13.33843 -13.08178 -12.92507 -12.86846 -12.72419 -12.53493 -12.45365 -12.07263 -11.78142 -11.63089 -11.41175 -11.30920 -10.93258 -10.60476 -10.57265 -10.41448 -9.02030 -8.17499 -6.25819 0.83166 1.40245 1.41107 1.54404 1.94155 2.00219 2.42299 3.12754 3.19004 3.54752 3.81734 4.08583 4.21669 4.31552 4.42822 4.51941 4.58346 4.71644 4.84185 4.92737 4.98518 5.06454 5.15183 5.22862 5.25831 5.32706 5.41675 5.42457 5.60158 5.67795 5.70366 6.08137 6.37263 6.43670 6.60382 6.88881 7.27050 7.42464 8.93582 Molecular weight = 238.15amu Principal moments of inertia in cm(-1) A = 0.028513 B = 0.007148 C = 0.006536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.782555 B = 3916.134918 C = 4282.844477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 C -0.119 4.119 4 C 0.073 3.927 5 N -0.529 5.529 6 C 0.210 3.790 7 C -0.512 4.512 8 H 0.059 0.941 9 C 0.003 3.997 10 N -0.934 5.934 11 Si 0.965 3.035 12 H -0.267 1.267 13 H -0.277 1.277 14 H -0.279 1.279 15 C 0.139 3.861 16 C 0.243 3.757 17 N -0.569 5.569 18 C 0.271 3.729 19 N -0.478 5.478 20 H 0.455 0.545 21 N -0.331 5.331 22 H 0.045 0.955 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.094 0.906 26 H 0.032 0.968 27 H 0.038 0.962 28 H 0.052 0.948 29 H 0.024 0.976 30 H 0.053 0.947 31 H -0.033 1.033 32 H 0.008 0.992 33 H 0.264 0.736 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.325 0.278 -18.106 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.123 4.123 3 C -0.176 4.176 4 C -0.055 4.055 5 N -0.253 5.253 6 C 0.085 3.915 7 C -0.551 4.551 8 H 0.077 0.923 9 C -0.195 4.195 10 N -0.575 5.575 11 Si 0.790 3.210 12 H -0.191 1.191 13 H -0.202 1.202 14 H -0.205 1.205 15 C 0.008 3.992 16 C -0.040 4.040 17 N -0.299 5.299 18 C -0.027 4.027 19 N -0.198 5.198 20 H 0.304 0.696 21 N -0.161 5.161 22 H 0.065 0.935 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.112 0.888 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.072 0.928 31 H -0.015 1.015 32 H 0.027 0.973 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -5.734 0.768 -17.654 18.578 hybrid contribution 0.168 0.132 0.700 0.732 sum -5.566 0.900 -16.955 17.867 Atomic orbital electron populations 1.21709 0.94133 1.01695 1.01665 1.21440 0.95938 0.96219 0.98699 1.21503 1.00395 0.95989 0.99746 1.22116 0.86878 0.97872 0.98613 1.61847 1.08216 1.45173 1.10072 1.19421 0.93506 0.95051 0.83568 1.21419 1.33752 1.01031 0.98863 0.92307 1.25836 0.94976 0.99968 0.98724 1.70079 1.37717 1.33419 1.16269 0.85401 0.77972 0.79352 0.78300 1.19119 1.20249 1.20466 1.20265 1.01020 0.92867 0.85036 1.23787 0.90361 0.93126 0.96710 1.70326 1.27725 1.30843 1.01009 1.27010 0.89105 0.87458 0.99121 1.48083 1.25957 1.35852 1.09912 0.69626 1.78046 1.24799 1.21884 0.91366 0.93545 0.91427 0.92513 0.88830 0.94879 0.94280 0.92852 0.95748 0.92797 1.01501 0.97344 0.92737 0.92203 0.90325 0.71044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 9.19 71.98 0.66 -3.06 16 2 C -0.10 -3.54 2.64 -10.79 -0.03 -3.56 16 3 C -0.12 -4.23 8.97 71.98 0.65 -3.59 16 4 C 0.07 3.02 4.26 86.30 0.37 3.39 16 5 N -0.53 -24.04 3.71 -905.33 -3.36 -27.39 16 6 C 0.21 11.52 4.71 85.56 0.40 11.92 16 7 C -0.51 -29.82 8.39 25.60 0.21 -29.61 16 8 H 0.06 3.42 7.58 -2.91 -0.02 3.40 16 9 C 0.00 0.16 5.46 84.66 0.46 0.62 16 10 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 11 Si 0.96 45.59 29.54 68.60 2.03 47.62 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 15 C 0.14 5.53 5.65 85.56 0.48 6.01 16 16 C 0.24 8.41 5.82 138.63 0.81 9.22 16 17 N -0.57 -16.12 9.19 -191.80 -1.76 -17.88 16 18 C 0.27 4.82 13.07 180.36 2.36 7.17 16 19 N -0.48 -9.66 7.45 -60.49 -0.45 -10.11 16 20 H 0.46 5.31 8.96 -213.09 -1.91 3.40 16 21 N -0.33 -10.99 12.80 -51.34 -0.66 -11.65 16 22 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 24 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.09 3.09 3.96 -2.39 -0.01 3.09 16 26 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.04 1.59 7.78 -2.39 -0.02 1.57 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.02 0.98 7.63 -2.39 -0.02 0.96 16 30 H 0.05 2.48 6.95 -2.39 -0.02 2.46 16 31 H -0.03 -1.90 8.05 -2.39 -0.02 -1.92 16 32 H 0.01 0.50 7.66 -2.39 -0.02 0.48 16 33 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 34 H 0.06 2.28 7.64 -2.39 -0.02 2.26 16 35 H 0.08 3.22 7.60 -2.38 -0.02 3.20 16 36 H 0.27 1.22 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -73.42 296.32 1.62 -71.80 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -0.84 Total: 5.90 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 6.37 Total: -1.48 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -5.94 Total: -123.84 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -73.42 1.62 -71.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118557452.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.279 kcal (2) G-P(sol) polarization free energy of solvation -73.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds