Wall clock time and date at job start Sun Mar 29 2020 22:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36939 * 120.00161 * 2 1 4 4 H 1.07996 * 119.99755 * 201.85880 * 3 2 1 5 5 C 1.38809 * 119.99715 * 21.85065 * 3 2 1 6 6 N 1.31623 * 120.00317 * 11.54923 * 5 3 2 7 7 Si 1.86810 * 119.99867 * 191.54728 * 5 3 2 8 8 H 1.48496 * 109.46948 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.46839 * 120.00021 * 7 5 3 10 10 H 1.48500 * 109.46950 * 240.00209 * 7 5 3 11 11 C 1.46500 * 119.99923 * 179.97438 * 2 1 3 12 12 H 1.08998 * 109.67345 * 179.50306 * 11 2 1 13 13 C 1.52899 * 109.76680 * 58.92763 * 11 2 1 14 14 C 1.52912 * 108.91010 * 172.64360 * 13 11 2 15 15 N 1.45754 * 110.32573 * 50.81136 * 14 13 11 16 16 C 1.46503 * 117.95093 * 161.04860 * 15 14 13 17 17 C 1.52999 * 117.49532 * 9.54072 * 16 15 14 18 18 C 1.52995 * 117.49772 * 300.87943 * 16 15 14 19 19 C 1.33357 * 124.10180 * 341.02654 * 15 14 13 20 20 O 1.21281 * 118.24158 * 182.24502 * 19 15 14 21 21 C 1.50172 * 123.51221 * 2.22271 * 19 15 14 22 22 H 1.08992 * 109.47325 * 275.16321 * 1 2 3 23 23 H 1.09000 * 109.46604 * 35.16202 * 1 2 3 24 24 H 1.08998 * 109.46893 * 155.15575 * 1 2 3 25 25 H 0.97004 * 120.00058 * 179.97438 * 6 5 3 26 26 H 1.08999 * 109.35202 * 52.89464 * 13 11 2 27 27 H 1.08999 * 109.61421 * 292.55420 * 13 11 2 28 28 H 1.09006 * 109.30445 * 290.60131 * 14 13 11 29 29 H 1.09003 * 109.30277 * 171.01803 * 14 13 11 30 30 H 1.08998 * 115.54935 * 155.20768 * 16 15 14 31 31 H 1.08999 * 117.49843 * 359.97438 * 17 16 15 32 32 H 1.08998 * 117.49890 * 145.02638 * 17 16 15 33 33 H 1.08997 * 117.50007 * 214.98143 * 18 16 15 34 34 H 1.09008 * 117.49957 * 359.97438 * 18 16 15 35 35 H 1.09001 * 109.39998 * 102.54097 * 21 19 15 36 36 H 1.09000 * 109.40200 * 222.28557 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1715 1.2195 -0.3482 5 6 1.5305 2.3448 0.4474 6 7 0.3780 2.2734 1.0792 7 14 2.3328 4.0059 0.1530 8 1 3.6135 3.8151 -0.5741 9 1 1.4256 4.8569 -0.6583 10 1 2.5968 4.6662 1.4566 11 6 2.1975 -1.2687 0.0006 12 1 3.2698 -1.0734 -0.0084 13 6 1.8129 -2.0884 -1.2315 14 6 2.7176 -3.3187 -1.3104 15 7 2.7268 -4.0230 -0.0344 16 6 3.1736 -5.4182 -0.0234 17 6 3.8075 -5.9671 -1.3032 18 6 2.4023 -6.4139 -0.8920 19 6 2.3544 -3.4769 1.1238 20 8 2.4434 -4.1483 2.1298 21 6 1.8310 -2.0749 1.2491 22 1 -0.3633 0.0925 1.0234 23 1 -0.3632 0.8402 -0.5918 24 1 -0.3633 -0.9325 -0.4318 25 1 -0.0545 3.0833 1.3922 26 1 1.9447 -1.4796 -2.1259 27 1 0.7727 -2.4039 -1.1510 28 1 3.7322 -3.0048 -1.5559 29 1 2.3493 -3.9875 -2.0884 30 1 3.5664 -5.7786 0.9274 31 1 3.8916 -5.2902 -2.1534 32 1 4.6169 -6.6889 -1.1944 33 1 2.2879 -7.4294 -0.5129 34 1 1.5621 -6.0310 -1.4714 35 1 0.7467 -2.1015 1.3574 36 1 2.2699 -1.6017 2.1274 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172018706.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:39 Heat of formation + Delta-G solvation = 18.904974 kcal Electronic energy + Delta-G solvation = -17558.128352 eV Core-core repulsion = 14851.038354 eV Total energy + Delta-G solvation = -2707.089998 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.35698 -37.15408 -36.73196 -34.24464 -31.93995 -29.72231 -29.14189 -26.06804 -24.66758 -23.11452 -22.31873 -21.91827 -19.98500 -18.11140 -16.93968 -16.77188 -16.06488 -15.35935 -15.00146 -14.35504 -13.96173 -13.80250 -13.70043 -13.27499 -12.62181 -12.28085 -12.19470 -11.74304 -11.52211 -11.41383 -11.05905 -10.87680 -10.82335 -10.59447 -10.46293 -10.31000 -10.26112 -9.98296 -9.84588 -9.30515 -8.59337 -8.36062 -6.83443 -5.75850 -3.22907 2.93566 3.10336 3.35977 3.43197 3.45051 3.82397 4.43456 4.65819 4.83389 4.87914 5.03895 5.08890 5.15074 5.33934 5.47006 5.50219 5.68615 5.73959 5.78163 5.92366 5.95223 5.96195 6.03911 6.23197 6.36593 6.64351 6.69950 6.77848 6.81429 7.35693 7.69922 7.71091 7.78362 8.34564 8.48398 9.19136 9.81298 10.29626 11.28665 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.045048 B = 0.005898 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.407109 B = 4746.033161 C = 4899.421817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.593 5.593 3 C -0.258 4.258 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.178 3.822 12 H 0.070 0.930 13 C -0.150 4.150 14 C 0.116 3.884 15 N -0.579 5.579 16 C 0.077 3.923 17 C -0.188 4.188 18 C -0.195 4.195 19 C 0.526 3.474 20 O -0.565 6.565 21 C -0.146 4.146 22 H 0.031 0.969 23 H 0.045 0.955 24 H -0.001 1.001 25 H 0.252 0.748 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.133 0.867 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.835 -12.832 -6.585 14.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.314 5.314 3 C -0.387 4.387 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.552 5.552 7 Si 0.736 3.264 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.069 3.931 12 H 0.088 0.912 13 C -0.190 4.190 14 C -0.007 4.007 15 N -0.311 5.311 16 C -0.028 4.028 17 C -0.226 4.226 18 C -0.234 4.234 19 C 0.317 3.683 20 O -0.444 6.444 21 C -0.188 4.188 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.017 0.983 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.150 0.850 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.745 -12.933 -5.988 14.736 hybrid contribution 0.251 0.940 -0.176 0.988 sum 3.996 -11.993 -6.164 14.064 Atomic orbital electron populations 1.20808 0.82462 0.95508 0.99591 1.43979 1.01884 0.99961 1.85595 1.19280 0.97750 0.85135 1.36540 0.91179 1.25031 0.97623 0.98550 0.98326 1.70082 1.17627 1.26984 1.40481 0.86168 0.78621 0.84177 0.77458 1.20316 1.21627 1.21698 1.20304 0.96610 0.86291 0.89925 0.91204 1.22406 0.99222 0.95199 1.02130 1.21441 1.00573 0.94105 0.84547 1.46891 1.64888 1.10914 1.08388 1.21646 1.02161 0.82362 0.96604 1.23364 0.96690 1.03830 0.98748 1.23357 0.95206 1.00158 1.04637 1.20659 0.76126 0.89757 0.81807 1.90638 1.55240 1.63071 1.35468 1.22379 1.03116 0.89892 1.03436 0.95100 0.93659 0.98282 0.93726 0.89650 0.91572 0.91738 0.91347 0.84953 0.88160 0.88108 0.88293 0.88630 0.88557 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.79 7.81 59.85 0.47 4.26 16 2 N -0.59 -14.10 2.84 -173.51 -0.49 -14.59 16 3 C -0.26 -6.82 9.61 -15.06 -0.14 -6.96 16 4 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 5 C 0.00 0.08 5.13 -17.43 -0.09 -0.01 16 6 N -0.91 -25.92 10.56 55.49 0.59 -25.34 16 7 Si 0.91 21.41 29.57 -169.99 -5.03 16.39 16 8 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 C 0.18 3.43 2.67 -67.95 -0.18 3.25 16 12 H 0.07 1.37 7.85 -51.93 -0.41 0.96 16 13 C -0.15 -2.32 5.08 -26.83 -0.14 -2.45 16 14 C 0.12 1.50 5.21 -4.49 -0.02 1.47 16 15 N -0.58 -8.67 3.15 -167.38 -0.53 -9.19 16 16 C 0.08 1.00 6.07 -67.93 -0.41 0.59 16 17 C -0.19 -1.80 9.70 -26.69 -0.26 -2.06 16 18 C -0.19 -2.03 10.04 -26.69 -0.27 -2.30 16 19 C 0.53 9.62 7.47 -11.87 -0.09 9.53 16 20 O -0.57 -11.91 16.30 5.56 0.09 -11.82 16 21 C -0.15 -2.80 5.49 -28.10 -0.15 -2.95 16 22 H 0.03 0.80 7.37 -51.93 -0.38 0.41 16 23 H 0.04 1.16 7.22 -51.93 -0.38 0.78 16 24 H 0.00 -0.03 6.56 -51.93 -0.34 -0.37 16 25 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.07 1.04 6.95 -51.93 -0.36 0.68 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.74 6.50 -51.93 -0.34 0.40 16 30 H 0.13 1.86 7.38 -51.93 -0.38 1.48 16 31 H 0.10 0.90 6.58 -51.93 -0.34 0.56 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.10 1.00 7.82 -51.92 -0.41 0.60 16 35 H 0.10 1.89 7.33 -51.93 -0.38 1.51 16 36 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 LS Contribution 286.42 15.07 4.32 4.32 Total: -1.00 -30.38 286.42 -7.72 -38.09 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.37 Total: -0.23 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -1.29 Total: 2.37 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.43 Total: -49.12 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.38 -7.72 -38.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172018706.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.999 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds