Wall clock time and date at job start Sun Mar 29 2020 23:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00336 * 2 1 4 4 H 1.48498 * 109.47113 * 240.00432 * 3 2 1 5 5 H 1.48502 * 109.46778 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47295 * 120.00070 * 3 2 1 7 7 C 1.37882 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00173 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47248 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47134 * 179.97438 * 10 9 7 12 12 C 1.46899 * 110.99898 * 179.97438 * 11 10 9 13 13 C 1.53123 * 109.57491 * 85.30254 * 12 11 10 14 14 C 1.53034 * 109.27992 * 177.60193 * 13 12 11 15 15 N 1.46847 * 109.51345 * 300.80438 * 14 13 12 16 16 C 1.46895 * 110.99982 * 185.84805 * 15 14 13 17 17 C 1.53001 * 117.49790 * 248.62113 * 16 15 14 18 18 C 1.53006 * 60.00157 * 252.50752 * 17 16 15 19 19 C 1.46843 * 111.20124 * 61.74903 * 15 14 13 20 20 C 1.53042 * 109.52278 * 298.25596 * 19 15 14 21 21 H 0.97000 * 119.99444 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47001 * 60.00145 * 9 7 2 23 23 H 1.09005 * 109.47194 * 300.00276 * 9 7 2 24 24 H 1.09011 * 109.46613 * 60.00135 * 10 9 7 25 25 H 1.08999 * 109.47477 * 300.00484 * 10 9 7 26 26 H 1.00892 * 111.00118 * 303.95967 * 11 10 9 27 27 H 1.09003 * 109.52480 * 325.13364 * 12 11 10 28 28 H 1.08997 * 109.51083 * 57.64787 * 13 12 11 29 29 H 1.08998 * 109.48980 * 297.53718 * 13 12 11 30 30 H 1.09002 * 109.46271 * 180.79158 * 14 13 12 31 31 H 1.08994 * 109.46242 * 60.81457 * 14 13 12 32 32 H 1.09002 * 115.55182 * 34.32677 * 16 15 14 33 33 H 1.08993 * 117.50121 * 359.97438 * 17 16 15 34 34 H 1.08996 * 117.49842 * 145.02062 * 17 16 15 35 35 H 1.08995 * 117.50070 * 252.51168 * 18 17 16 36 36 H 1.08994 * 117.49688 * 107.48335 * 18 17 16 37 37 H 1.08993 * 109.46313 * 58.27251 * 19 15 14 38 38 H 1.09000 * 109.46480 * 178.25361 * 19 15 14 39 39 H 1.08997 * 109.50758 * 179.11703 * 20 19 15 40 40 H 1.08998 * 109.50897 * 299.20258 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9343 0.0001 12 6 2.4352 -6.0759 -0.0005 13 6 2.8509 -6.4001 1.4371 14 6 3.7659 -7.6268 1.4340 15 7 3.0552 -8.7674 0.8422 16 6 3.8522 -9.9968 0.9483 17 6 4.4085 -10.5920 -0.3467 18 6 3.2492 -11.2813 0.3758 19 6 2.6873 -8.4976 -0.5536 20 6 1.7403 -7.2967 -0.6100 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.8719 -3.6043 0.8896 25 1 2.8720 -3.6044 -0.8904 26 1 0.8745 -4.9841 0.7816 27 1 3.3191 -5.8286 -0.5885 28 1 1.9634 -6.6095 2.0343 29 1 3.3838 -5.5496 1.8621 30 1 4.0524 -7.8688 2.4575 31 1 4.6594 -7.4119 0.8480 32 1 4.4637 -10.0846 1.8463 33 1 4.1829 -10.0717 -1.2775 34 1 5.3863 -11.0715 -0.3009 35 1 3.4644 -12.2140 0.8970 36 1 2.2612 -11.2140 -0.0795 37 1 3.5860 -8.2788 -1.1302 38 1 2.1902 -9.3720 -0.9737 39 1 1.4798 -7.0870 -1.6474 40 1 0.8350 -7.5203 -0.0455 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256069464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:48 Heat of formation + Delta-G solvation = -1.833339 kcal Electronic energy + Delta-G solvation = -16969.828394 eV Core-core repulsion = 14397.672210 eV Total energy + Delta-G solvation = -2572.156185 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.69580 -38.29042 -36.08317 -34.72416 -32.40355 -31.73161 -29.71769 -26.32526 -24.58030 -23.78314 -23.23214 -22.50176 -21.66983 -20.38758 -18.52835 -17.70352 -16.68272 -16.37786 -16.27605 -15.76305 -15.49111 -14.96817 -14.84900 -14.46602 -14.26797 -13.90534 -13.41697 -13.10624 -13.02553 -12.83482 -12.56814 -12.53264 -12.35511 -12.11116 -11.99235 -11.79475 -11.58709 -11.49187 -11.38395 -11.23953 -11.00159 -10.56422 -9.22341 -9.07824 -8.20575 -6.32470 1.39910 1.43407 1.51390 2.40281 2.68290 3.09728 3.12616 3.32563 3.76896 3.86348 3.93254 4.06054 4.12441 4.19077 4.27385 4.39318 4.49668 4.56166 4.61885 4.63357 4.73939 4.77463 4.82914 4.86033 4.99895 5.06637 5.11101 5.12167 5.24958 5.25717 5.31959 5.45083 5.67725 5.79136 6.09207 6.14311 6.16546 6.30028 6.55609 6.84782 7.36811 8.91468 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.065780 B = 0.003742 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.560866 B = 7481.019024 C = 7629.992452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.032 3.968 10 C 0.087 3.913 11 N -0.692 5.692 12 C 0.087 3.913 13 C -0.140 4.140 14 C 0.069 3.931 15 N -0.516 5.516 16 C 0.010 3.990 17 C -0.219 4.219 18 C -0.168 4.168 19 C 0.060 3.940 20 C -0.098 4.098 21 H 0.264 0.736 22 H -0.007 1.007 23 H -0.009 1.009 24 H 0.019 0.981 25 H 0.054 0.946 26 H 0.339 0.661 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.034 0.966 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.038 0.962 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.948 -21.078 1.626 22.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.042 4.042 11 N -0.322 5.322 12 C -0.023 4.023 13 C -0.180 4.180 14 C -0.060 4.060 15 N -0.238 5.238 16 C -0.099 4.099 17 C -0.258 4.258 18 C -0.205 4.205 19 C -0.068 4.068 20 C -0.136 4.136 21 H 0.073 0.927 22 H 0.011 0.989 23 H 0.009 0.991 24 H 0.038 0.962 25 H 0.072 0.928 26 H 0.156 0.844 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.052 0.948 32 H 0.145 0.855 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.109 0.891 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.266 -21.003 1.204 22.603 hybrid contribution 1.038 1.251 0.409 1.676 sum 9.304 -19.752 1.613 21.893 Atomic orbital electron populations 1.70105 1.07860 1.27905 1.51306 1.25996 0.95784 1.03430 0.94572 0.85465 0.78244 0.77892 0.79221 1.19141 1.20751 1.19067 1.21594 0.93524 0.92295 1.51113 0.92166 1.18916 0.94311 0.92339 0.94980 1.21768 0.95538 0.88457 0.98471 1.60586 1.19932 1.01631 1.50015 1.21662 0.94540 0.90740 0.95399 1.22253 1.00554 0.97422 0.97733 1.21954 0.94341 0.89563 1.00100 1.61800 1.41746 1.02454 1.17848 1.22778 0.99625 0.89757 0.97782 1.23580 0.99259 1.05585 0.97402 1.23117 0.97765 0.96092 1.03547 1.22155 0.97950 0.98167 0.88544 1.21507 0.98511 0.92466 1.01135 0.92702 0.98861 0.99073 0.96246 0.92778 0.84350 0.91878 0.91289 0.92125 0.89555 0.94753 0.85472 0.88805 0.87799 0.87075 0.89054 0.94424 0.89637 0.91245 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.55 -31.78 9.11 25.60 0.23 -31.54 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.75 5.23 29.85 0.16 1.90 16 10 C 0.09 3.73 5.42 86.30 0.47 4.20 16 11 N -0.69 -25.21 6.25 -491.13 -3.07 -28.28 16 12 C 0.09 2.51 2.53 45.00 0.11 2.62 16 13 C -0.14 -3.58 5.35 30.65 0.16 -3.41 16 14 C 0.07 1.45 5.44 86.32 0.47 1.92 16 15 N -0.52 -10.66 4.88 -871.13 -4.25 -14.91 16 16 C 0.01 0.16 6.11 44.92 0.27 0.43 16 17 C -0.22 -3.21 9.58 30.60 0.29 -2.91 16 18 C -0.17 -2.40 9.94 30.60 0.30 -2.10 16 19 C 0.06 1.25 4.12 86.33 0.36 1.60 16 20 C -0.10 -2.46 5.70 30.65 0.17 -2.28 16 21 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 22 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 23 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 24 H 0.02 0.81 7.51 -2.38 -0.02 0.80 16 25 H 0.05 2.34 8.06 -2.39 -0.02 2.32 16 26 H 0.34 12.17 8.45 -89.70 -0.76 11.42 16 27 H 0.06 1.91 7.80 -2.39 -0.02 1.89 16 28 H 0.07 1.81 8.10 -2.39 -0.02 1.79 16 29 H 0.06 1.64 7.54 -2.39 -0.02 1.62 16 30 H 0.09 1.60 8.07 -2.39 -0.02 1.58 16 31 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.13 1.84 8.04 -2.39 -0.02 1.82 16 33 H 0.09 1.49 5.97 -2.39 -0.01 1.47 16 34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.09 1.42 7.23 -2.39 -0.02 1.40 16 37 H 0.04 0.78 7.12 -2.39 -0.02 0.77 16 38 H 0.09 1.61 6.42 -2.39 -0.02 1.59 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -63.81 312.63 -1.30 -65.11 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.24 Total: 17.92 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: 3.47 Total: -29.10 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -7.03 Total: -100.63 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -63.81 -1.30 -65.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256069464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.277 kcal (2) G-P(sol) polarization free energy of solvation -63.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds