Wall clock time and date at job start Sun Mar 29 2020 22:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46880 * 124.37239 * 2 1 4 4 C 1.54703 * 105.51794 * 163.14514 * 3 2 1 5 5 C 1.53613 * 101.51456 * 24.53126 * 4 3 2 6 6 C 1.53613 * 110.85247 * 96.88896 * 5 4 3 7 7 C 1.55171 * 102.65714 * 142.27403 * 6 5 4 8 8 N 1.48691 * 103.38916 * 323.44850 * 7 6 5 9 9 C 1.46904 * 111.03963 * 159.10433 * 8 7 6 10 10 C 1.50695 * 109.47351 * 52.57265 * 9 8 7 11 11 H 1.08004 * 119.99883 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00314 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99479 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00089 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47312 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47296 * 120.00363 * 14 12 10 17 17 H 1.48505 * 109.46726 * 239.99619 * 14 12 10 18 18 C 1.48185 * 105.82721 * 38.56358 * 8 7 6 19 19 C 1.34743 * 124.36990 * 179.97438 * 2 1 3 20 20 O 1.21281 * 125.13338 * 1.04433 * 19 2 1 21 21 H 1.09004 * 109.47246 * 89.99574 * 1 2 3 22 22 H 1.08999 * 109.47524 * 209.99984 * 1 2 3 23 23 H 1.09004 * 109.46818 * 329.99591 * 1 2 3 24 24 H 1.08999 * 110.23832 * 44.12922 * 3 2 1 25 25 H 1.09003 * 110.23633 * 282.15628 * 3 2 1 26 26 H 1.09004 * 111.01914 * 266.47425 * 4 3 2 27 27 H 1.09001 * 111.04994 * 142.60570 * 4 3 2 28 28 H 1.08996 * 110.77451 * 260.56854 * 6 5 4 29 29 H 1.09001 * 110.76954 * 23.99030 * 6 5 4 30 30 H 1.09000 * 110.63763 * 81.89377 * 7 6 5 31 31 H 1.09002 * 110.63716 * 204.95265 * 7 6 5 32 32 H 1.09009 * 109.46826 * 172.56777 * 9 8 7 33 33 H 1.08997 * 109.46889 * 292.56886 * 9 8 7 34 34 H 0.97002 * 119.99763 * 179.97438 * 13 12 10 35 35 H 1.09002 * 110.02047 * 215.60196 * 18 8 7 36 36 H 1.08997 * 110.01692 * 94.25243 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2942 1.2123 0.0000 4 6 3.7054 0.7485 0.4322 5 6 3.6792 -0.7327 0.0260 6 6 4.3378 -0.9349 -1.3469 7 6 5.0860 -2.2828 -1.1699 8 7 5.5658 -2.2281 0.2364 9 6 5.8574 -3.5744 0.7469 10 6 6.7877 -4.2818 -0.2045 11 1 7.1279 -3.7816 -1.0992 12 6 7.2036 -5.5681 0.0666 13 7 6.7888 -6.1774 1.1558 14 14 8.3561 -6.4453 -1.1130 15 1 8.6721 -5.5493 -2.2543 16 1 9.6101 -6.8055 -0.4039 17 1 7.7018 -7.6787 -1.6189 18 6 4.4751 -1.5910 1.0111 19 6 2.2257 -1.1122 0.0005 20 8 1.8011 -2.2481 -0.0171 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.9012 1.9380 0.7121 25 1 2.3293 1.6451 -0.9998 26 1 3.8398 0.8564 1.5085 27 1 4.4792 1.2896 -0.1124 28 1 3.5836 -1.0113 -2.1301 29 1 5.0394 -0.1288 -1.5616 30 1 4.4045 -3.1218 -1.3104 31 1 5.9265 -2.3492 -1.8607 32 1 6.3294 -3.4971 1.7264 33 1 4.9290 -4.1387 0.8343 34 1 7.0811 -7.0825 1.3464 35 1 4.8935 -0.9643 1.7987 36 1 3.8306 -2.3551 1.4456 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032446.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:13 Heat of formation + Delta-G solvation = -48.859930 kcal Electronic energy + Delta-G solvation = -17567.792432 eV Core-core repulsion = 14857.763927 eV Total energy + Delta-G solvation = -2710.028505 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.12615 -38.97001 -37.50558 -35.30520 -33.71038 -31.21375 -29.71698 -28.27864 -27.71120 -24.92465 -23.99895 -22.25384 -21.79659 -20.03795 -18.46097 -17.58231 -17.20132 -16.90753 -16.35991 -16.22221 -15.54679 -15.12241 -14.82529 -14.65083 -14.27318 -14.08324 -13.69556 -13.36392 -13.30868 -13.05206 -12.89804 -12.78921 -12.65314 -12.33253 -12.27334 -12.02589 -11.81259 -11.50597 -11.18028 -10.74177 -10.68246 -9.71426 -9.24503 -8.25221 -6.36702 1.38274 1.40126 1.42617 1.53865 2.04662 2.37929 3.07961 3.15152 3.39445 3.52648 3.60222 3.96813 4.04821 4.33460 4.37020 4.41529 4.56444 4.60017 4.68181 4.73961 4.81323 4.82821 4.87277 4.93678 5.05998 5.14529 5.16036 5.21456 5.29391 5.57293 5.61378 5.87893 6.02664 6.15484 6.43305 6.79581 7.10415 7.33548 8.88021 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.046158 B = 0.005792 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.466399 B = 4833.108152 C = 4974.994397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.623 5.623 3 C 0.103 3.897 4 C -0.109 4.109 5 C -0.105 4.105 6 C -0.085 4.085 7 C 0.048 3.952 8 N -0.512 5.512 9 C 0.199 3.801 10 C -0.529 4.529 11 H 0.071 0.929 12 C -0.004 4.004 13 N -0.938 5.938 14 Si 0.977 3.023 15 H -0.257 1.257 16 H -0.274 1.274 17 H -0.281 1.281 18 C 0.053 3.947 19 C 0.513 3.487 20 O -0.584 6.584 21 H 0.063 0.937 22 H 0.049 0.951 23 H 0.109 0.891 24 H 0.111 0.889 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.124 0.876 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.003 0.997 31 H 0.081 0.919 32 H 0.006 0.994 33 H -0.051 1.051 34 H 0.265 0.735 35 H 0.099 0.901 36 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.127 20.300 -4.080 22.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.357 5.357 3 C -0.018 4.018 4 C -0.146 4.146 5 C -0.109 4.109 6 C -0.123 4.123 7 C -0.080 4.080 8 N -0.235 5.235 9 C 0.072 3.928 10 C -0.567 4.567 11 H 0.089 0.911 12 C -0.201 4.201 13 N -0.578 5.578 14 Si 0.801 3.199 15 H -0.181 1.181 16 H -0.199 1.199 17 H -0.207 1.207 18 C -0.076 4.076 19 C 0.302 3.698 20 O -0.464 6.464 21 H 0.082 0.918 22 H 0.068 0.932 23 H 0.128 0.872 24 H 0.129 0.871 25 H 0.114 0.886 26 H 0.111 0.889 27 H 0.142 0.858 28 H 0.091 0.909 29 H 0.138 0.862 30 H 0.021 0.979 31 H 0.099 0.901 32 H 0.024 0.976 33 H -0.034 1.034 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -8.963 19.887 -3.938 22.166 hybrid contribution -0.510 -2.061 -0.013 2.123 sum -9.473 17.826 -3.951 20.570 Atomic orbital electron populations 1.21716 0.76995 1.03706 1.02610 1.48496 1.07393 1.07457 1.72314 1.22504 0.89323 0.85837 1.04180 1.22773 0.98134 0.89919 1.03799 1.21560 0.91476 0.99508 0.98342 1.22414 0.98762 0.97681 0.93444 1.23075 0.97456 0.96092 0.91349 1.64969 1.35694 1.20362 1.02496 1.19542 0.93211 0.84596 0.95487 1.21559 1.28125 0.99146 1.07902 0.91094 1.26069 0.98364 0.98284 0.97416 1.70130 1.46369 1.13860 1.27468 0.85219 0.78003 0.78030 0.78677 1.18089 1.19895 1.20668 1.22793 0.91554 0.96519 0.96684 1.20957 0.90016 0.84335 0.74539 1.90698 1.79607 1.23693 1.52386 0.91807 0.93195 0.87218 0.87062 0.88582 0.88893 0.85826 0.90883 0.86156 0.97878 0.90061 0.97631 1.03355 0.92626 0.88308 0.97702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.60 10.97 127.77 1.40 3.00 16 2 N -0.62 -14.10 3.35 -843.06 -2.82 -16.92 16 3 C 0.10 1.31 7.37 86.89 0.64 1.95 16 4 C -0.11 -1.82 6.19 31.38 0.19 -1.63 16 5 C -0.10 -3.14 0.77 -52.66 -0.04 -3.18 16 6 C -0.08 -2.50 6.22 31.54 0.20 -2.31 16 7 C 0.05 2.06 5.56 86.70 0.48 2.54 16 8 N -0.51 -24.06 5.40 -887.88 -4.80 -28.86 16 9 C 0.20 11.74 4.79 85.55 0.41 12.15 16 10 C -0.53 -31.87 8.56 25.60 0.22 -31.65 16 11 H 0.07 4.08 6.54 -2.91 -0.02 4.06 16 12 C 0.00 -0.22 5.46 84.66 0.46 0.25 16 13 N -0.94 -60.11 13.29 21.45 0.28 -59.82 16 14 Si 0.98 46.11 29.54 68.60 2.03 48.13 16 15 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 18 C 0.05 2.12 6.02 86.05 0.52 2.64 16 19 C 0.51 17.52 6.60 87.52 0.58 18.10 16 20 O -0.58 -27.04 17.15 -3.03 -0.05 -27.09 16 21 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 22 H 0.05 1.12 7.95 -2.39 -0.02 1.10 16 23 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.09 1.44 7.59 -2.38 -0.02 1.43 16 27 H 0.12 1.44 7.45 -2.39 -0.02 1.42 16 28 H 0.07 2.04 7.84 -2.39 -0.02 2.02 16 29 H 0.12 2.66 7.46 -2.39 -0.02 2.64 16 30 H 0.00 0.14 8.01 -2.39 -0.02 0.12 16 31 H 0.08 3.38 7.18 -2.39 -0.02 3.37 16 32 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 33 H -0.05 -3.44 7.82 -2.39 -0.02 -3.46 16 34 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 35 H 0.10 3.38 7.40 -2.39 -0.02 3.36 16 36 H 0.00 0.22 6.87 -2.39 -0.02 0.20 16 Total: -1.00 -82.95 289.67 0.76 -82.19 By element: Atomic # 1 Polarization: -0.55 SS G_CDS: 1.05 Total: 0.50 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 5.06 Total: 1.87 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -7.33 Total: -105.60 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.05 Total: -27.09 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -82.95 0.76 -82.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032446.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.333 kcal (2) G-P(sol) polarization free energy of solvation -82.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds