Wall clock time and date at job start Sun Mar 29 2020 21:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 115.55953 * 2 1 4 4 C 1.53075 * 117.49709 * 214.29198 * 2 1 3 5 5 C 1.52996 * 117.50202 * 145.68761 * 2 1 3 6 6 H 1.09001 * 117.50062 * 359.97438 * 5 2 1 7 7 C 1.50698 * 117.50324 * 214.97982 * 5 2 1 8 8 O 1.21287 * 119.99870 * 0.08739 * 7 5 2 9 9 N 1.34770 * 120.00487 * 180.08639 * 7 5 2 10 10 C 1.46505 * 120.00128 * 180.02562 * 9 7 5 11 11 C 1.50706 * 109.46909 * 180.02562 * 10 9 7 12 12 C 1.31000 * 119.99770 * 125.00156 * 11 10 9 13 13 C 1.50706 * 119.99386 * 179.97438 * 12 11 10 14 14 N 1.46500 * 109.46771 * 124.99799 * 13 12 11 15 15 C 1.36935 * 119.99815 * 179.97438 * 14 13 12 16 16 H 1.08006 * 120.00309 * 0.02562 * 15 14 13 17 17 C 1.38821 * 120.00153 * 180.02562 * 15 14 13 18 18 N 1.31614 * 119.99636 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99915 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47255 * 59.99822 * 19 17 15 21 21 H 1.48502 * 109.46812 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47091 * 299.99476 * 19 17 15 23 23 H 1.09005 * 109.46857 * 274.31275 * 1 2 3 24 24 H 1.08995 * 109.47482 * 34.31231 * 1 2 3 25 25 H 1.09002 * 109.46891 * 154.31307 * 1 2 3 26 26 H 1.08992 * 117.51409 * 145.03413 * 4 2 1 27 27 H 1.09004 * 117.48747 * 359.97438 * 4 2 1 28 28 H 0.96999 * 120.00248 * 0.02562 * 9 7 5 29 29 H 1.08995 * 109.47293 * 59.99880 * 10 9 7 30 30 H 1.09003 * 109.46781 * 299.99897 * 10 9 7 31 31 H 1.07999 * 119.99813 * 304.99110 * 11 10 9 32 32 H 1.07995 * 120.00390 * 0.27134 * 12 11 10 33 33 H 1.08999 * 109.47057 * 244.99765 * 13 12 11 34 34 H 1.09000 * 109.47142 * 5.00006 * 13 12 11 35 35 H 0.97003 * 120.00080 * 359.97438 * 14 13 12 36 36 H 0.96997 * 120.00124 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2367 -1.1218 -0.7650 5 6 2.2365 -1.1209 0.7650 6 1 1.6113 -1.8582 1.2687 7 6 3.5293 -0.7811 1.4608 8 8 3.9710 0.3470 1.4025 9 7 4.1947 -1.7305 2.1479 10 6 5.4512 -1.3999 2.8248 11 6 5.9888 -2.6278 3.5137 12 6 7.2051 -3.0422 3.2588 13 6 7.7428 -4.2697 3.9482 14 7 8.2069 -5.2300 2.9438 15 6 8.7402 -6.4282 3.3373 16 1 8.8183 -6.6656 4.3880 17 6 9.1805 -7.3380 2.3857 18 7 9.0858 -7.0485 1.1052 19 14 9.9074 -8.9729 2.9224 20 1 8.8973 -9.7312 3.7033 21 1 10.2977 -9.7583 1.7241 22 1 11.1047 -8.7290 3.7665 23 1 -0.3633 0.0773 1.0248 24 1 -0.3634 0.8488 -0.5793 25 1 -0.3633 -0.9261 -0.4455 26 1 3.1719 -0.8765 -1.2683 27 1 1.6113 -1.8596 -1.2676 28 1 3.8417 -2.6328 2.1942 29 1 5.2717 -0.6181 3.5626 30 1 6.1771 -1.0479 2.0917 31 1 5.3713 -3.1658 4.2177 32 1 7.8241 -2.5016 2.5582 33 1 8.5747 -3.9887 4.5940 34 1 6.9544 -4.7241 4.5483 35 1 8.1364 -5.0170 2.0001 36 1 9.3931 -7.6843 0.4402 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274263283.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:11 Heat of formation + Delta-G solvation = 4.906845 kcal Electronic energy + Delta-G solvation = -15746.933416 eV Core-core repulsion = 13039.236414 eV Total energy + Delta-G solvation = -2707.697003 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.05323 -37.22854 -36.10161 -34.67285 -32.81874 -30.64872 -29.10256 -27.32021 -24.74408 -23.31436 -21.85898 -21.04885 -20.31938 -19.32515 -17.52998 -17.10356 -16.05689 -15.33336 -15.05125 -14.58076 -14.33510 -13.76113 -13.69577 -13.45435 -13.26315 -12.99294 -12.76343 -12.26662 -12.03871 -11.84174 -11.66712 -11.05022 -10.82182 -10.65820 -10.59468 -10.32834 -10.13064 -9.95108 -9.81156 -9.24934 -8.99283 -8.72317 -6.96894 -5.79547 -3.09273 2.26387 2.42729 3.27799 3.42432 3.46619 3.47946 3.62649 4.48285 4.52952 4.57758 4.60336 4.91712 5.00311 5.05129 5.25353 5.37704 5.45941 5.49634 5.53279 5.61328 5.71233 5.76410 5.80885 5.98992 6.05584 6.11968 6.35539 6.46049 6.55716 6.89016 7.13208 7.48874 7.65971 8.18326 8.38765 9.49934 10.06191 10.41567 11.43137 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035659 B = 0.003459 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.027240 B = 8092.658194 C = 8598.234515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.124 4.124 3 H 0.117 0.883 4 C -0.148 4.148 5 C -0.192 4.192 6 H 0.123 0.877 7 C 0.541 3.459 8 O -0.547 6.547 9 N -0.719 5.719 10 C 0.155 3.845 11 C -0.202 4.202 12 C -0.106 4.106 13 C 0.172 3.828 14 N -0.730 5.730 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.910 3.090 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.404 0.596 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.031 0.969 34 H 0.025 0.975 35 H 0.385 0.615 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.728 12.054 -0.402 19.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.143 4.143 3 H 0.135 0.865 4 C -0.185 4.185 5 C -0.213 4.213 6 H 0.141 0.859 7 C 0.327 3.673 8 O -0.425 6.425 9 N -0.370 5.370 10 C 0.032 3.968 11 C -0.221 4.221 12 C -0.126 4.126 13 C 0.045 3.955 14 N -0.374 5.374 15 C -0.375 4.375 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.239 0.761 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.219 0.781 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.323 12.721 -0.330 19.918 hybrid contribution 0.335 -1.434 0.067 1.474 sum -14.989 11.287 -0.263 18.765 Atomic orbital electron populations 1.21402 0.92278 1.02231 1.02143 1.22387 0.95147 0.95092 1.01624 0.86544 1.23127 1.03202 1.01387 0.90824 1.22311 0.97765 1.05252 0.95963 0.85887 1.19681 0.84677 0.84680 0.78249 1.90683 1.68878 1.21216 1.61752 1.45994 1.24584 1.13522 1.52911 1.20323 0.85009 0.95890 0.95557 1.22691 0.97529 0.98817 1.03066 1.23339 0.95857 0.96261 0.97113 1.19827 0.96273 0.87155 0.92195 1.42292 1.74348 1.16271 1.04498 1.19204 1.32795 0.93043 0.92416 0.91119 1.24770 1.01996 0.98917 0.95244 1.69654 1.52852 1.36415 0.99194 0.86230 0.79023 0.83587 0.77111 1.21215 1.21623 1.21184 0.91988 0.91711 0.92303 0.88174 0.87693 0.76107 0.91133 0.91265 0.86742 0.87277 0.95130 0.95676 0.78128 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.19 37.16 0.38 -0.46 16 2 C -0.12 -1.14 5.92 -90.58 -0.54 -1.67 16 3 H 0.12 1.25 7.67 -51.92 -0.40 0.85 16 4 C -0.15 -1.32 9.88 -26.69 -0.26 -1.59 16 5 C -0.19 -1.89 5.91 -91.77 -0.54 -2.43 16 6 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 7 C 0.54 7.11 7.61 -10.99 -0.08 7.03 16 8 O -0.55 -9.16 16.26 5.55 0.09 -9.07 16 9 N -0.72 -8.72 5.55 -61.47 -0.34 -9.06 16 10 C 0.15 2.03 6.11 -5.19 -0.03 1.99 16 11 C -0.20 -2.78 9.24 -36.02 -0.33 -3.11 16 12 C -0.11 -1.74 9.24 -36.02 -0.33 -2.07 16 13 C 0.17 3.47 6.70 -5.19 -0.03 3.43 16 14 N -0.73 -18.69 5.59 -61.08 -0.34 -19.03 16 15 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 16 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 19 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 26 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.10 0.74 8.05 -51.93 -0.42 0.33 16 28 H 0.40 4.14 8.46 -40.82 -0.35 3.80 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.98 7.79 -51.93 -0.40 0.57 16 31 H 0.11 1.48 7.84 -52.49 -0.41 1.07 16 32 H 0.11 1.76 7.84 -52.49 -0.41 1.35 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.03 0.50 7.79 -51.93 -0.40 0.10 16 35 H 0.39 10.37 7.66 -40.82 -0.31 10.06 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 313.62 15.07 4.73 4.73 Total: -1.00 -32.51 313.62 -7.79 -40.30 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.60 Total: 8.75 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -2.03 Total: -6.36 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.04 Total: -55.66 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.51 -7.79 -40.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274263283.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.208 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds