Wall clock time and date at job start Sun Mar 29 2020 21:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 115.55953 * 2 1 4 4 C 1.53075 * 117.49709 * 214.29198 * 2 1 3 5 5 C 1.52996 * 117.50202 * 145.68761 * 2 1 3 6 6 H 1.09001 * 117.50062 * 359.97438 * 5 2 1 7 7 C 1.50698 * 117.50324 * 214.97982 * 5 2 1 8 8 O 1.21287 * 119.99870 * 0.08739 * 7 5 2 9 9 N 1.34770 * 120.00487 * 180.08639 * 7 5 2 10 10 C 1.46505 * 120.00128 * 180.02562 * 9 7 5 11 11 C 1.50706 * 109.46909 * 180.02562 * 10 9 7 12 12 C 1.31000 * 119.99770 * 125.00156 * 11 10 9 13 13 C 1.50706 * 119.99386 * 179.97438 * 12 11 10 14 14 N 1.46500 * 109.46771 * 124.99799 * 13 12 11 15 15 C 1.36935 * 119.99815 * 179.97438 * 14 13 12 16 16 H 1.08006 * 120.00309 * 0.02562 * 15 14 13 17 17 C 1.38821 * 120.00153 * 180.02562 * 15 14 13 18 18 N 1.31614 * 119.99636 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99915 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47255 * 59.99822 * 19 17 15 21 21 H 1.48502 * 109.46812 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47091 * 299.99476 * 19 17 15 23 23 H 1.09005 * 109.46857 * 274.31275 * 1 2 3 24 24 H 1.08995 * 109.47482 * 34.31231 * 1 2 3 25 25 H 1.09002 * 109.46891 * 154.31307 * 1 2 3 26 26 H 1.08992 * 117.51409 * 145.03413 * 4 2 1 27 27 H 1.09004 * 117.48747 * 359.97438 * 4 2 1 28 28 H 0.96999 * 120.00248 * 0.02562 * 9 7 5 29 29 H 1.08995 * 109.47293 * 59.99880 * 10 9 7 30 30 H 1.09003 * 109.46781 * 299.99897 * 10 9 7 31 31 H 1.07999 * 119.99813 * 304.99110 * 11 10 9 32 32 H 1.07995 * 120.00390 * 0.27134 * 12 11 10 33 33 H 1.08999 * 109.47057 * 244.99765 * 13 12 11 34 34 H 1.09000 * 109.47142 * 5.00006 * 13 12 11 35 35 H 0.97003 * 120.00080 * 359.97438 * 14 13 12 36 36 H 0.96997 * 120.00124 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2367 -1.1218 -0.7650 5 6 2.2365 -1.1209 0.7650 6 1 1.6113 -1.8582 1.2687 7 6 3.5293 -0.7811 1.4608 8 8 3.9710 0.3470 1.4025 9 7 4.1947 -1.7305 2.1479 10 6 5.4512 -1.3999 2.8248 11 6 5.9888 -2.6278 3.5137 12 6 7.2051 -3.0422 3.2588 13 6 7.7428 -4.2697 3.9482 14 7 8.2069 -5.2300 2.9438 15 6 8.7402 -6.4282 3.3373 16 1 8.8183 -6.6656 4.3880 17 6 9.1805 -7.3380 2.3857 18 7 9.0858 -7.0485 1.1052 19 14 9.9074 -8.9729 2.9224 20 1 8.8973 -9.7312 3.7033 21 1 10.2977 -9.7583 1.7241 22 1 11.1047 -8.7290 3.7665 23 1 -0.3633 0.0773 1.0248 24 1 -0.3634 0.8488 -0.5793 25 1 -0.3633 -0.9261 -0.4455 26 1 3.1719 -0.8765 -1.2683 27 1 1.6113 -1.8596 -1.2676 28 1 3.8417 -2.6328 2.1942 29 1 5.2717 -0.6181 3.5626 30 1 6.1771 -1.0479 2.0917 31 1 5.3713 -3.1658 4.2177 32 1 7.8241 -2.5016 2.5582 33 1 8.5747 -3.9887 4.5940 34 1 6.9544 -4.7241 4.5483 35 1 8.1364 -5.0170 2.0001 36 1 9.3931 -7.6843 0.4402 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274263283.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:11 Heat of formation + Delta-G solvation = -17.010924 kcal Electronic energy + Delta-G solvation = -15747.883842 eV Core-core repulsion = 13039.236414 eV Total energy + Delta-G solvation = -2708.647429 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.05073 -38.15015 -37.43647 -36.18948 -34.41117 -32.44791 -29.84660 -28.66720 -26.27018 -24.63408 -23.36060 -21.85363 -21.32071 -20.52815 -19.13514 -18.44695 -17.15903 -16.72214 -16.40103 -15.98606 -15.38271 -15.19017 -15.11791 -14.87873 -14.22500 -14.12347 -13.70588 -13.50996 -13.32919 -12.94075 -12.87416 -12.70701 -12.32850 -12.24457 -12.00532 -11.80518 -11.36032 -11.12477 -11.04052 -10.89217 -10.37271 -9.99416 -9.02739 -7.96683 -5.26928 1.03320 1.44014 1.48055 1.51261 1.57589 2.29781 2.56759 2.85488 3.36953 3.68164 3.74074 3.79353 3.87258 4.06406 4.19415 4.22151 4.42183 4.44533 4.63073 4.67537 4.78224 4.87642 4.91048 4.95405 4.98706 5.05140 5.21190 5.32536 5.43525 5.46485 5.63522 5.81279 6.25166 6.50933 7.18147 7.31199 8.05086 8.29226 9.26676 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035659 B = 0.003459 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.027240 B = 8092.658194 C = 8598.234515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.126 4.126 3 H 0.093 0.907 4 C -0.143 4.143 5 C -0.196 4.196 6 H 0.150 0.850 7 C 0.535 3.465 8 O -0.590 6.590 9 N -0.713 5.713 10 C 0.156 3.844 11 C -0.161 4.161 12 C -0.132 4.132 13 C 0.174 3.826 14 N -0.745 5.745 15 C -0.251 4.251 16 H 0.078 0.922 17 C -0.076 4.076 18 N -0.970 5.970 19 Si 0.978 3.022 20 H -0.275 1.275 21 H -0.295 1.295 22 H -0.277 1.277 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.130 0.870 28 H 0.416 0.584 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.132 0.868 32 H 0.106 0.894 33 H 0.030 0.970 34 H 0.034 0.966 35 H 0.374 0.626 36 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.309 11.428 0.370 20.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.144 4.144 3 H 0.112 0.888 4 C -0.180 4.180 5 C -0.217 4.217 6 H 0.168 0.832 7 C 0.323 3.677 8 O -0.471 6.471 9 N -0.364 5.364 10 C 0.033 3.967 11 C -0.180 4.180 12 C -0.151 4.151 13 C 0.048 3.952 14 N -0.388 5.388 15 C -0.383 4.383 16 H 0.096 0.904 17 C -0.268 4.268 18 N -0.620 5.620 19 Si 0.806 3.194 20 H -0.201 1.201 21 H -0.221 1.221 22 H -0.203 1.203 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.148 0.852 28 H 0.252 0.748 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.150 0.850 32 H 0.124 0.876 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.206 0.794 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.924 12.092 0.490 20.806 hybrid contribution 0.777 -1.132 -0.125 1.379 sum -16.147 10.960 0.365 19.519 Atomic orbital electron populations 1.21402 0.90113 1.03337 1.02699 1.22428 0.96689 0.93958 1.01366 0.88831 1.23214 1.02922 1.01796 0.90117 1.22387 0.96451 1.06416 0.96400 0.83193 1.20292 0.85508 0.84048 0.77817 1.90664 1.70174 1.22986 1.63275 1.45928 1.23993 1.14048 1.52393 1.20235 0.85312 0.95624 0.95523 1.22766 0.96218 0.97746 1.01260 1.23014 0.97172 0.96063 0.98872 1.19909 0.96371 0.87503 0.91414 1.42532 1.74495 1.16721 1.05020 1.19647 1.31911 0.93915 0.92814 0.90369 1.25637 1.03181 1.02651 0.95334 1.69817 1.54442 1.37528 1.00244 0.85156 0.78470 0.79238 0.76550 1.20107 1.22099 1.20334 0.91622 0.91043 0.90854 0.89744 0.85183 0.74776 0.90347 0.92490 0.85030 0.87564 0.95178 0.94805 0.79417 0.93890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 10.19 71.98 0.73 -0.59 16 2 C -0.13 -2.15 5.92 -10.77 -0.06 -2.22 16 3 H 0.09 2.04 7.67 -2.38 -0.02 2.02 16 4 C -0.14 -2.33 9.88 30.62 0.30 -2.03 16 5 C -0.20 -3.51 5.91 -11.54 -0.07 -3.58 16 6 H 0.15 1.86 8.14 -2.39 -0.02 1.84 16 7 C 0.54 13.65 7.61 87.66 0.67 14.31 16 8 O -0.59 -19.92 16.26 -3.05 -0.05 -19.97 16 9 N -0.71 -16.20 5.55 -466.77 -2.59 -18.79 16 10 C 0.16 3.89 6.11 85.63 0.52 4.42 16 11 C -0.16 -4.13 9.24 25.65 0.24 -3.89 16 12 C -0.13 -4.22 9.24 25.65 0.24 -3.98 16 13 C 0.17 6.86 6.70 85.63 0.57 7.43 16 14 N -0.74 -38.22 5.59 -347.16 -1.94 -40.17 16 15 C -0.25 -14.08 9.99 84.04 0.84 -13.24 16 16 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 17 C -0.08 -4.35 5.50 84.87 0.47 -3.89 16 18 N -0.97 -59.52 13.06 21.65 0.28 -59.24 16 19 Si 0.98 45.77 29.55 68.60 2.03 47.80 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 23 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 24 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.07 0.63 7.90 -2.39 -0.02 0.61 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 27 H 0.13 1.46 8.05 -2.39 -0.02 1.44 16 28 H 0.42 7.57 8.46 -92.71 -0.78 6.78 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 1.59 7.79 -2.39 -0.02 1.57 16 31 H 0.13 2.99 7.84 -2.91 -0.02 2.97 16 32 H 0.11 3.45 7.84 -2.91 -0.02 3.43 16 33 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.03 1.29 7.79 -2.39 -0.02 1.27 16 35 H 0.37 20.48 7.66 -92.71 -0.71 19.77 16 36 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -69.83 313.62 1.75 -68.08 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: -0.42 Total: 29.54 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 4.45 Total: -7.26 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -4.25 Total: -118.19 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.05 Total: -19.97 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -69.83 1.75 -68.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274263283.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.070 kcal (2) G-P(sol) polarization free energy of solvation -69.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds