Wall clock time and date at job start Sun Mar 29 2020 22:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46875 * 2 1 4 4 C 1.52999 * 109.47524 * 120.00190 * 2 1 3 5 5 N 1.46494 * 109.47192 * 175.00258 * 4 2 1 6 6 C 1.36943 * 119.99885 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99679 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00029 * 179.97438 * 6 5 4 9 9 N 1.31625 * 119.99922 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00185 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47325 * 89.99600 * 10 8 6 12 12 H 1.48498 * 109.47212 * 210.00223 * 10 8 6 13 13 H 1.48511 * 109.46838 * 330.00159 * 10 8 6 14 14 N 1.46499 * 109.47022 * 240.00416 * 2 1 3 15 15 C 1.34784 * 119.99971 * 84.99732 * 14 2 1 16 16 O 1.21274 * 119.99897 * 359.72827 * 15 14 2 17 17 C 1.50695 * 119.99635 * 179.97438 * 15 14 2 18 18 C 1.54634 * 111.03896 * 292.02428 * 17 15 14 19 19 C 1.51110 * 104.72331 * 217.33716 * 18 17 15 20 20 C 1.30521 * 111.10738 * 16.43637 * 19 18 17 21 21 C 1.51105 * 111.10368 * 0.02562 * 20 19 18 22 22 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47314 * 299.99734 * 1 2 3 24 24 H 1.09001 * 109.47831 * 59.99682 * 1 2 3 25 25 H 1.09001 * 109.46859 * 295.00018 * 4 2 1 26 26 H 1.09000 * 109.46643 * 54.99720 * 4 2 1 27 27 H 0.97004 * 120.00480 * 359.97438 * 5 4 2 28 28 H 0.96999 * 120.00028 * 179.97438 * 9 8 6 29 29 H 0.96999 * 119.99984 * 264.99579 * 14 2 1 30 30 H 1.08996 * 110.91830 * 56.03807 * 17 15 14 31 31 H 1.08995 * 110.38833 * 336.14338 * 18 17 15 32 32 H 1.08998 * 110.38845 * 98.52363 * 18 17 15 33 33 H 1.08004 * 124.44513 * 196.45493 * 19 18 17 34 34 H 1.07997 * 124.44864 * 180.02562 * 20 19 18 35 35 H 1.09003 * 110.38734 * 224.75811 * 21 20 19 36 36 H 1.08995 * 110.39122 * 102.37206 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8263 1.1905 6 6 4.1839 -1.4388 2.2066 7 1 3.6468 -1.8440 3.0515 8 6 5.5672 -1.5388 2.1507 9 7 6.2217 -1.0453 1.1208 10 14 6.5000 -2.3749 3.5365 11 1 6.6316 -3.8242 3.2408 12 1 7.8506 -1.7701 3.6595 13 1 5.7590 -2.1951 4.8109 14 7 2.0183 -0.6905 -1.1962 15 6 2.1469 -0.0181 -2.3572 16 8 1.8538 1.1574 -2.4128 17 6 2.6498 -0.7283 -3.5875 18 6 4.1360 -1.1253 -3.4308 19 6 4.7354 -0.9186 -4.8025 20 6 3.9611 -0.1772 -5.5469 21 6 2.7164 0.2348 -4.7958 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3635 0.5139 -0.8899 25 1 1.7517 -0.1583 2.1369 26 1 1.6054 -1.7198 1.2950 27 1 3.9824 -0.4627 0.4315 28 1 7.1884 -1.1149 1.0820 29 1 2.2490 -1.6317 -1.1527 30 1 2.0335 -1.5984 -3.8138 31 1 4.6263 -0.4809 -2.7012 32 1 4.2205 -2.1704 -3.1330 33 1 5.6804 -1.3306 -5.1246 34 1 4.1811 0.1048 -6.5659 35 1 1.8352 0.1140 -5.4259 36 1 2.8023 1.2666 -4.4553 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569049808.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:26 Heat of formation + Delta-G solvation = -18.387940 kcal Electronic energy + Delta-G solvation = -17129.207221 eV Core-core repulsion = 14420.500080 eV Total energy + Delta-G solvation = -2708.707141 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.97956 -37.65529 -35.96664 -33.62104 -31.48936 -30.15737 -28.90284 -27.95320 -25.67933 -23.03983 -22.29179 -20.38158 -19.60735 -18.66381 -17.36190 -16.80695 -16.11587 -15.70929 -14.88129 -14.26944 -14.15245 -13.63167 -13.26065 -12.68392 -12.48044 -12.27978 -12.16648 -12.12082 -12.02605 -11.69284 -11.45495 -11.12483 -10.99233 -10.88429 -10.84625 -10.44198 -10.06120 -9.75442 -9.43461 -8.92799 -8.78448 -8.64475 -6.97114 -5.79478 -3.09096 2.35346 2.97830 3.41091 3.46730 3.48445 3.55450 4.55917 4.60692 4.75204 5.06892 5.25858 5.32793 5.38062 5.51865 5.53664 5.67031 5.70254 5.80024 5.92915 6.02336 6.05884 6.08880 6.13479 6.19980 6.33243 6.40859 6.50010 6.60950 6.71376 6.96676 6.99247 7.66726 7.92849 8.38447 8.60272 9.50340 10.06362 10.42074 11.42744 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.021406 B = 0.007033 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.710912 B = 3980.440326 C = 5088.558395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.132 3.868 3 H 0.085 0.915 4 C 0.144 3.856 5 N -0.731 5.731 6 C -0.243 4.243 7 H 0.070 0.930 8 C -0.012 4.012 9 N -0.930 5.930 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 N -0.709 5.709 15 C 0.524 3.476 16 O -0.550 6.550 17 C -0.116 4.116 18 C -0.091 4.091 19 C -0.159 4.159 20 C -0.174 4.174 21 C -0.084 4.084 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.033 0.967 26 H 0.024 0.976 27 H 0.386 0.614 28 H 0.255 0.745 29 H 0.404 0.596 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.069 0.931 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.147 -1.161 -10.316 13.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.027 3.973 3 H 0.104 0.896 4 C 0.016 3.984 5 N -0.376 5.376 6 C -0.374 4.374 7 H 0.088 0.912 8 C -0.208 4.208 9 N -0.578 5.578 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.359 5.359 15 C 0.311 3.689 16 O -0.428 6.428 17 C -0.137 4.137 18 C -0.128 4.128 19 C -0.177 4.177 20 C -0.192 4.192 21 C -0.122 4.122 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.220 0.780 28 H 0.065 0.935 29 H 0.239 0.761 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.088 0.912 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.326 -0.394 -10.161 13.142 hybrid contribution 0.964 -0.863 0.559 1.410 sum -7.362 -1.257 -9.602 12.165 Atomic orbital electron populations 1.22093 0.95598 1.01785 1.02078 1.21234 0.93292 0.98003 0.84743 0.89644 1.20981 0.86874 0.96932 0.93616 1.42351 0.99724 1.70263 1.25277 1.19219 0.89442 1.29486 0.99254 0.91175 1.24745 0.96425 1.01537 0.98093 1.69665 1.07227 1.50711 1.30223 0.86191 0.79407 0.78972 0.81595 1.21741 1.21789 1.20781 1.45991 1.66304 1.14400 1.09251 1.20303 0.77050 0.87075 0.84522 1.90643 1.50775 1.16159 1.85195 1.22158 0.98233 0.99515 0.93809 1.21337 0.92180 1.02817 0.96482 1.23268 0.99520 0.99539 0.95368 1.23245 0.97127 0.99549 0.99255 1.21253 0.96447 1.00517 0.93955 0.92628 0.91723 0.92491 0.94945 0.95824 0.77989 0.93507 0.76135 0.88179 0.89199 0.90199 0.85735 0.85922 0.91249 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.48 37.16 0.35 -1.83 16 2 C 0.13 2.25 2.73 -67.93 -0.19 2.06 16 3 H 0.09 1.66 7.58 -51.92 -0.39 1.26 16 4 C 0.14 2.80 5.82 -4.05 -0.02 2.78 16 5 N -0.73 -18.01 5.43 -59.91 -0.33 -18.33 16 6 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 7 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 8 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 9 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 10 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 N -0.71 -11.47 4.52 -53.81 -0.24 -11.71 16 15 C 0.52 8.72 7.02 -10.98 -0.08 8.64 16 16 O -0.55 -10.83 15.17 5.56 0.08 -10.75 16 17 C -0.12 -1.57 3.55 -90.04 -0.32 -1.89 16 18 C -0.09 -1.29 6.37 -26.82 -0.17 -1.46 16 19 C -0.16 -2.01 10.77 -35.69 -0.38 -2.39 16 20 C -0.17 -2.08 10.77 -35.69 -0.38 -2.46 16 21 C -0.08 -1.10 6.18 -26.81 -0.17 -1.27 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.39 10.12 7.33 -40.82 -0.30 9.82 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.40 6.18 8.60 -40.82 -0.35 5.83 16 30 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.54 7.88 -51.93 -0.41 1.14 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 34 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.41 6.96 -51.93 -0.36 1.05 16 LS Contribution 303.01 15.07 4.57 4.57 Total: -1.00 -31.00 303.01 -7.41 -38.42 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -5.59 Total: 12.65 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -1.61 Total: -5.05 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.16 Total: -56.90 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.00 -7.41 -38.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569049808.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.028 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds