Wall clock time and date at job start Sun Mar 29 2020 22:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47268 * 2 1 4 4 C 1.50704 * 109.47217 * 120.00058 * 2 1 3 5 5 H 1.07998 * 119.99977 * 119.99730 * 4 2 1 6 6 C 1.37875 * 119.99877 * 300.00013 * 4 2 1 7 7 N 1.31516 * 120.00256 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99693 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46714 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47128 * 300.00209 * 8 6 4 11 11 H 1.48493 * 109.46732 * 60.00255 * 8 6 4 12 12 N 1.46492 * 109.47148 * 240.00233 * 2 1 3 13 13 C 1.34781 * 120.00239 * 84.99865 * 12 2 1 14 14 O 1.21277 * 119.99962 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00119 * 180.02562 * 13 12 2 16 16 H 1.09001 * 115.56350 * 282.90796 * 15 13 12 17 17 C 1.52354 * 117.52474 * 137.03917 * 15 13 12 18 18 H 1.09009 * 116.26353 * 145.87223 * 17 15 13 19 19 C 1.52247 * 119.60715 * 1.51530 * 17 15 13 20 20 N 1.46734 * 110.47336 * 310.54670 * 19 17 15 21 21 C 1.47165 * 110.33424 * 303.64851 * 20 19 17 22 22 C 1.52992 * 108.59326 * 76.11682 * 21 20 19 23 23 C 1.52400 * 60.53013 * 252.58308 * 17 15 13 24 24 H 1.09008 * 117.25432 * 252.59286 * 23 17 15 25 25 H 1.09001 * 109.47328 * 299.99548 * 1 2 3 26 26 H 1.09003 * 109.47589 * 59.99642 * 1 2 3 27 27 H 1.09004 * 109.47268 * 179.97438 * 1 2 3 28 28 H 0.96998 * 120.00170 * 179.97438 * 7 6 4 29 29 H 0.96999 * 120.00377 * 265.00014 * 12 2 1 30 30 H 1.09001 * 109.30155 * 190.23915 * 19 17 15 31 31 H 1.09000 * 109.14027 * 70.75009 * 19 17 15 32 32 H 1.00902 * 110.99891 * 180.17324 * 20 19 17 33 33 H 1.09001 * 109.62384 * 316.37851 * 21 20 19 34 34 H 1.09010 * 109.76547 * 195.93006 * 21 20 19 35 35 H 1.09000 * 109.44767 * 185.82409 * 22 21 20 36 36 H 1.09002 * 109.42020 * 65.90527 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1205 4.0080 9 1 1.8270 -0.4200 5.2204 10 1 1.8259 -2.5203 4.0077 11 1 3.8063 -1.1210 4.0081 12 7 2.0183 -0.6905 -1.1961 13 6 2.1470 -0.0182 -2.3571 14 8 1.8581 1.1584 -2.4117 15 6 2.6488 -0.7287 -3.5878 16 1 3.7237 -0.9056 -3.6233 17 6 1.9372 -0.4440 -4.9045 18 1 2.5591 -0.4490 -5.7998 19 6 0.7892 0.5554 -4.9383 20 7 -0.1773 0.2630 -3.8737 21 6 -0.6653 -1.1204 -3.9918 22 6 0.4225 -2.0667 -3.4802 23 6 1.7336 -1.7892 -4.2178 24 1 2.2103 -2.6583 -4.6713 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7089 1.1614 3.4844 29 1 2.2490 -1.6317 -1.1527 30 1 0.2890 0.4970 -5.9050 31 1 1.1862 1.5608 -4.7983 32 1 -0.9435 0.9193 -3.8906 33 1 -0.8832 -1.3438 -5.0362 34 1 -1.5689 -1.2448 -3.3948 35 1 0.1183 -3.0985 -3.6566 36 1 0.5670 -1.9087 -2.4114 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575913052.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:00 Heat of formation + Delta-G solvation = -29.612604 kcal Electronic energy + Delta-G solvation = -17962.972586 eV Core-core repulsion = 15253.778708 eV Total energy + Delta-G solvation = -2709.193878 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.36098 -38.84009 -36.45944 -35.04817 -34.12371 -31.86270 -30.69895 -27.26957 -26.80917 -24.46118 -24.13879 -22.06809 -20.61170 -19.34900 -18.56581 -18.01678 -17.01176 -16.76211 -16.31988 -15.92232 -15.47049 -14.73031 -14.68783 -14.54063 -14.20923 -13.61430 -13.41506 -13.30188 -12.94196 -12.78643 -12.73255 -12.62649 -12.36462 -12.16815 -12.11698 -11.43888 -11.05985 -10.90525 -10.73568 -10.56027 -10.17732 -9.42554 -9.13232 -8.12403 -6.29698 1.44739 1.47271 1.54919 2.20241 2.39717 2.63244 2.96290 3.16887 3.38275 3.75065 3.88427 4.00971 4.24281 4.38090 4.48539 4.49397 4.66221 4.74043 4.88216 4.91899 5.02528 5.06338 5.07615 5.15646 5.24207 5.25421 5.48899 5.54121 5.74019 5.86314 6.06284 6.22736 6.27629 6.55169 6.80750 7.26052 7.39029 7.90904 8.93178 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.040254 B = 0.006772 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.421335 B = 4133.762938 C = 4213.948426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.280 3.720 3 H -0.011 1.011 4 C -0.547 4.547 5 H 0.068 0.932 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.970 3.030 9 H -0.286 1.286 10 H -0.264 1.264 11 H -0.272 1.272 12 N -0.707 5.707 13 C 0.550 3.450 14 O -0.579 6.579 15 C -0.194 4.194 16 H 0.137 0.863 17 C -0.117 4.117 18 H 0.136 0.864 19 C 0.093 3.907 20 N -0.695 5.695 21 C 0.059 3.941 22 C -0.108 4.108 23 C -0.108 4.108 24 H 0.139 0.861 25 H 0.056 0.944 26 H 0.020 0.980 27 H 0.029 0.971 28 H 0.264 0.736 29 H 0.395 0.605 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.342 0.658 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.275 -8.114 -14.886 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.176 3.824 3 H 0.006 0.994 4 C -0.586 4.586 5 H 0.087 0.913 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.794 3.206 9 H -0.211 1.211 10 H -0.189 1.189 11 H -0.197 1.197 12 N -0.357 5.357 13 C 0.337 3.663 14 O -0.458 6.458 15 C -0.215 4.215 16 H 0.155 0.845 17 C -0.135 4.135 18 H 0.154 0.846 19 C -0.036 4.036 20 N -0.327 5.327 21 C -0.070 4.070 22 C -0.146 4.146 23 C -0.127 4.127 24 H 0.157 0.843 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.229 0.771 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.159 0.841 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.084 -7.295 -14.296 16.050 hybrid contribution -0.245 -0.127 0.440 0.520 sum -0.330 -7.422 -13.855 15.721 Atomic orbital electron populations 1.21737 0.98235 0.98583 0.99293 1.18134 0.91091 0.91226 0.81904 0.99354 1.21591 1.32341 1.13384 0.91243 0.91339 1.25795 0.94974 0.95619 1.02256 1.70070 1.37156 1.24001 1.24421 0.85438 0.78607 0.78752 0.77761 1.21141 1.18881 1.19683 1.46202 1.66204 1.13496 1.09754 1.19763 0.76300 0.86376 0.83868 1.90552 1.51636 1.18297 1.85313 1.22396 0.99982 1.06153 0.92999 0.84537 1.22154 0.99397 0.96951 0.95028 0.84646 1.21139 0.92300 0.98145 0.92003 1.60402 1.18768 1.04004 1.49515 1.21949 0.96908 0.88737 0.99425 1.21424 0.93372 0.99711 1.00123 1.22519 0.96528 0.92982 1.00661 0.84287 0.92542 0.96073 0.95153 0.92723 0.77056 0.93219 0.92196 0.84059 0.93368 0.91591 0.88959 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.27 9.26 71.98 0.67 -5.61 16 2 C 0.28 15.10 2.56 44.25 0.11 15.21 16 3 H -0.01 -0.74 7.58 -2.39 -0.02 -0.75 16 4 C -0.55 -30.07 8.73 25.60 0.22 -29.85 16 5 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -54.29 11.32 21.45 0.24 -54.04 16 8 Si 0.97 43.13 29.54 68.60 2.03 45.15 16 9 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 10 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 N -0.71 -30.79 3.80 -446.11 -1.69 -32.49 16 13 C 0.55 22.77 5.14 87.66 0.45 23.22 16 14 O -0.58 -28.97 14.32 -3.02 -0.04 -29.01 16 15 C -0.19 -5.69 6.16 -11.55 -0.07 -5.76 16 16 H 0.14 3.43 8.14 -2.39 -0.02 3.41 16 17 C -0.12 -2.81 6.07 -11.45 -0.07 -2.88 16 18 H 0.14 2.42 8.14 -2.38 -0.02 2.40 16 19 C 0.09 2.53 5.53 86.09 0.48 3.01 16 20 N -0.70 -21.40 4.61 -514.99 -2.38 -23.78 16 21 C 0.06 1.50 6.52 86.25 0.56 2.06 16 22 C -0.11 -2.73 5.75 30.58 0.18 -2.56 16 23 C -0.11 -2.44 6.27 -10.80 -0.07 -2.50 16 24 H 0.14 2.20 8.14 -2.38 -0.02 2.18 16 25 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 26 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.40 15.14 8.14 -92.71 -0.75 14.38 16 30 H 0.05 1.08 8.13 -2.39 -0.02 1.07 16 31 H 0.06 1.93 7.74 -2.39 -0.02 1.91 16 32 H 0.34 10.10 8.90 -89.69 -0.80 9.30 16 33 H 0.05 1.02 7.97 -2.39 -0.02 1.00 16 34 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.06 1.94 5.58 -2.39 -0.01 1.93 16 Total: -1.00 -69.07 285.36 0.60 -68.47 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -0.46 Total: 30.16 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 2.91 Total: -4.47 kcal Atomic # 7 Polarization: -106.48 SS G_CDS: -3.83 Total: -110.31 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.04 Total: -29.01 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -69.07 0.60 -68.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575913052.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.857 kcal (2) G-P(sol) polarization free energy of solvation -69.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds