Wall clock time and date at job start Sun Mar 29 2020 21:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 115.55944 * 2 1 4 4 C 1.53076 * 117.51286 * 214.30151 * 2 1 3 5 5 C 1.52993 * 117.49812 * 145.69379 * 2 1 3 6 6 H 1.09006 * 117.49785 * 215.00568 * 5 2 1 7 7 C 1.50698 * 117.50277 * 359.97438 * 5 2 1 8 8 O 1.21283 * 119.99648 * 359.91218 * 7 5 2 9 9 N 1.34774 * 120.00576 * 179.91582 * 7 5 2 10 10 C 1.46500 * 120.00064 * 180.02562 * 9 7 5 11 11 C 1.50706 * 109.46771 * 179.97438 * 10 9 7 12 12 C 1.31000 * 119.99386 * 124.99799 * 11 10 9 13 13 C 1.50706 * 119.99770 * 179.97438 * 12 11 10 14 14 N 1.46505 * 109.46909 * 125.00156 * 13 12 11 15 15 C 1.36935 * 119.99976 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99769 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99962 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99946 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99845 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47417 * 60.00007 * 19 17 15 21 21 H 1.48499 * 109.46981 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47517 * 299.99916 * 19 17 15 23 23 H 1.08997 * 109.47122 * 274.30724 * 1 2 3 24 24 H 1.09006 * 109.46708 * 34.30856 * 1 2 3 25 25 H 1.09002 * 109.46675 * 154.30488 * 1 2 3 26 26 H 1.09000 * 117.49185 * 145.03855 * 4 2 1 27 27 H 1.08999 * 117.53267 * 359.97438 * 4 2 1 28 28 H 0.97003 * 119.99856 * 0.02562 * 9 7 5 29 29 H 1.08999 * 109.47302 * 59.99830 * 10 9 7 30 30 H 1.09000 * 109.47118 * 299.99453 * 10 9 7 31 31 H 1.07995 * 120.00167 * 304.72231 * 11 10 9 32 32 H 1.07999 * 120.00417 * 0.02562 * 12 11 10 33 33 H 1.08995 * 109.47530 * 245.00485 * 13 12 11 34 34 H 1.09003 * 109.47026 * 5.00763 * 13 12 11 35 35 H 0.96999 * 119.99624 * 0.02562 * 14 13 12 36 36 H 0.97003 * 120.00067 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1215 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 3.1714 -0.8751 1.2686 7 6 1.3721 -2.1404 1.4611 8 8 0.1639 -2.0519 1.4032 9 7 1.9416 -3.1503 2.1482 10 6 1.1012 -4.1416 2.8246 11 6 1.9770 -5.1562 3.5136 12 6 1.8294 -5.3863 4.7948 13 6 2.7047 -6.4013 5.4838 14 7 3.3753 -5.7734 6.6250 15 6 4.2277 -6.5066 7.4065 16 1 4.4060 -7.5477 7.1813 17 6 4.8627 -5.9118 8.4881 18 7 4.6457 -4.6429 8.7622 19 14 6.0250 -6.9123 9.5546 20 1 7.1416 -7.4271 8.7219 21 1 6.5700 -6.0516 10.6350 22 1 5.2880 -8.0534 10.1545 23 1 -0.3633 0.0772 1.0247 24 1 -0.3633 0.8489 -0.5793 25 1 -0.3633 -0.9261 -0.4456 26 1 3.1724 -0.8755 -1.2680 27 1 1.6127 -1.8598 -1.2682 28 1 2.9079 -3.2209 2.1949 29 1 0.4708 -4.6445 2.0912 30 1 0.4730 -3.6425 3.5624 31 1 2.7231 -5.6968 2.9503 32 1 1.0799 -4.8491 5.3571 33 1 2.0916 -7.2315 5.8344 34 1 3.4521 -6.7723 4.7824 35 1 3.2154 -4.8382 6.8269 36 1 5.0891 -4.2273 9.5182 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699229482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:20 Heat of formation + Delta-G solvation = 9.445392 kcal Electronic energy + Delta-G solvation = -15891.200239 eV Core-core repulsion = 13183.700042 eV Total energy + Delta-G solvation = -2707.500197 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.16724 -37.14729 -36.01163 -34.65934 -32.83260 -30.65273 -28.81434 -27.30996 -24.79380 -23.32577 -21.86802 -21.20370 -20.30679 -19.22154 -17.27756 -17.04028 -16.07927 -15.58704 -14.96945 -14.74802 -14.17592 -13.70209 -13.56950 -13.30766 -13.20095 -12.79047 -12.70689 -12.36919 -12.02145 -11.82951 -11.67737 -11.04838 -10.82160 -10.64216 -10.46624 -10.28643 -10.12435 -9.82694 -9.71213 -9.20425 -8.98709 -8.71858 -6.96913 -5.79567 -3.09351 2.26427 2.44868 3.30540 3.42408 3.46628 3.47945 3.61608 4.41571 4.57790 4.60306 4.63754 4.91674 5.02885 5.16443 5.25313 5.44129 5.53282 5.57560 5.63154 5.69275 5.80174 5.82981 5.95710 5.99053 6.12024 6.30582 6.42357 6.47015 6.55917 6.89206 7.13347 7.50496 7.65953 8.21070 8.38730 9.49913 10.06143 10.41516 11.43090 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042469 B = 0.003418 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.140402 B = 8188.903408 C = 8478.387867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.120 4.120 3 H 0.110 0.890 4 C -0.152 4.152 5 C -0.194 4.194 6 H 0.124 0.876 7 C 0.540 3.460 8 O -0.541 6.541 9 N -0.721 5.721 10 C 0.156 3.844 11 C -0.202 4.202 12 C -0.107 4.107 13 C 0.172 3.828 14 N -0.730 5.730 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.910 3.090 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 H 0.068 0.932 24 H 0.047 0.953 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.404 0.596 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.031 0.969 34 H 0.025 0.975 35 H 0.385 0.615 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.127 6.553 -18.246 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.138 4.138 3 H 0.128 0.872 4 C -0.190 4.190 5 C -0.215 4.215 6 H 0.142 0.858 7 C 0.327 3.673 8 O -0.418 6.418 9 N -0.371 5.371 10 C 0.033 3.967 11 C -0.221 4.221 12 C -0.126 4.126 13 C 0.045 3.955 14 N -0.374 5.374 15 C -0.375 4.375 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 H 0.087 0.913 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.238 0.762 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.219 0.781 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.912 6.461 -18.194 20.192 hybrid contribution 1.266 -0.321 0.876 1.572 sum -4.646 6.140 -17.318 18.953 Atomic orbital electron populations 1.21363 0.91492 1.01303 1.02679 1.22382 0.96615 0.93546 1.01299 0.87170 1.23086 1.03042 1.01936 0.90888 1.22309 1.02263 1.01204 0.95741 0.85839 1.19672 0.88106 0.81189 0.78347 1.90693 1.14568 1.74887 1.61679 1.46043 1.10853 1.27377 1.52868 1.20306 0.92380 0.88148 0.95864 1.22695 1.02285 1.00904 0.96224 1.23339 0.97394 0.97175 0.94697 1.19827 0.92657 0.93070 0.89899 1.42293 1.52853 1.11779 1.30489 1.19202 1.18028 0.94043 1.06197 0.91116 1.24766 1.00864 0.96172 0.99111 1.69657 1.47020 1.10610 1.30826 0.86231 0.80759 0.78929 0.80033 1.21214 1.21624 1.21185 0.91298 0.93376 0.91803 0.87876 0.88295 0.76201 0.91213 0.91257 0.86770 0.87278 0.95140 0.95679 0.78132 0.93380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 8.43 37.16 0.31 -0.85 16 2 C -0.12 -1.09 6.41 -90.58 -0.58 -1.67 16 3 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.15 -1.23 9.88 -26.69 -0.26 -1.50 16 5 C -0.19 -1.88 6.18 -91.78 -0.57 -2.45 16 6 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 7 C 0.54 6.88 7.59 -10.99 -0.08 6.80 16 8 O -0.54 -8.46 13.10 5.55 0.07 -8.38 16 9 N -0.72 -8.58 5.55 -61.47 -0.34 -8.92 16 10 C 0.16 2.01 6.11 -5.19 -0.03 1.97 16 11 C -0.20 -2.77 9.24 -36.02 -0.33 -3.10 16 12 C -0.11 -1.74 9.24 -36.02 -0.33 -2.08 16 13 C 0.17 3.47 6.70 -5.19 -0.03 3.43 16 14 N -0.73 -18.69 5.59 -61.08 -0.34 -19.03 16 15 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 19 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H 0.07 0.84 7.25 -51.93 -0.38 0.46 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.74 7.02 -51.93 -0.36 0.38 16 26 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.10 0.86 8.05 -51.93 -0.42 0.44 16 28 H 0.40 4.11 8.46 -40.82 -0.35 3.77 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.97 7.79 -51.93 -0.40 0.56 16 31 H 0.11 1.48 7.84 -52.49 -0.41 1.07 16 32 H 0.11 1.76 7.84 -52.49 -0.41 1.35 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.03 0.50 7.79 -51.93 -0.40 0.10 16 35 H 0.39 10.37 7.66 -40.82 -0.31 10.06 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 308.17 15.07 4.64 4.64 Total: -1.00 -31.97 308.17 -7.96 -39.92 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.53 Total: 8.96 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -2.16 Total: -6.92 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.04 Total: -55.54 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.07 Total: -8.38 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.97 -7.96 -39.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699229482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.369 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds