Wall clock time and date at job start Sun Mar 29 2020 21:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 115.55944 * 2 1 4 4 C 1.53076 * 117.51286 * 214.30151 * 2 1 3 5 5 C 1.52993 * 117.49812 * 145.69379 * 2 1 3 6 6 H 1.09006 * 117.49785 * 215.00568 * 5 2 1 7 7 C 1.50698 * 117.50277 * 359.97438 * 5 2 1 8 8 O 1.21283 * 119.99648 * 359.91218 * 7 5 2 9 9 N 1.34774 * 120.00576 * 179.91582 * 7 5 2 10 10 C 1.46500 * 120.00064 * 180.02562 * 9 7 5 11 11 C 1.50706 * 109.46771 * 179.97438 * 10 9 7 12 12 C 1.31000 * 119.99386 * 124.99799 * 11 10 9 13 13 C 1.50706 * 119.99770 * 179.97438 * 12 11 10 14 14 N 1.46505 * 109.46909 * 125.00156 * 13 12 11 15 15 C 1.36935 * 119.99976 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99769 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99962 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99946 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99845 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47417 * 60.00007 * 19 17 15 21 21 H 1.48499 * 109.46981 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47517 * 299.99916 * 19 17 15 23 23 H 1.08997 * 109.47122 * 274.30724 * 1 2 3 24 24 H 1.09006 * 109.46708 * 34.30856 * 1 2 3 25 25 H 1.09002 * 109.46675 * 154.30488 * 1 2 3 26 26 H 1.09000 * 117.49185 * 145.03855 * 4 2 1 27 27 H 1.08999 * 117.53267 * 359.97438 * 4 2 1 28 28 H 0.97003 * 119.99856 * 0.02562 * 9 7 5 29 29 H 1.08999 * 109.47302 * 59.99830 * 10 9 7 30 30 H 1.09000 * 109.47118 * 299.99453 * 10 9 7 31 31 H 1.07995 * 120.00167 * 304.72231 * 11 10 9 32 32 H 1.07999 * 120.00417 * 0.02562 * 12 11 10 33 33 H 1.08995 * 109.47530 * 245.00485 * 13 12 11 34 34 H 1.09003 * 109.47026 * 5.00763 * 13 12 11 35 35 H 0.96999 * 119.99624 * 0.02562 * 14 13 12 36 36 H 0.97003 * 120.00067 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1215 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 3.1714 -0.8751 1.2686 7 6 1.3721 -2.1404 1.4611 8 8 0.1639 -2.0519 1.4032 9 7 1.9416 -3.1503 2.1482 10 6 1.1012 -4.1416 2.8246 11 6 1.9770 -5.1562 3.5136 12 6 1.8294 -5.3863 4.7948 13 6 2.7047 -6.4013 5.4838 14 7 3.3753 -5.7734 6.6250 15 6 4.2277 -6.5066 7.4065 16 1 4.4060 -7.5477 7.1813 17 6 4.8627 -5.9118 8.4881 18 7 4.6457 -4.6429 8.7622 19 14 6.0250 -6.9123 9.5546 20 1 7.1416 -7.4271 8.7219 21 1 6.5700 -6.0516 10.6350 22 1 5.2880 -8.0534 10.1545 23 1 -0.3633 0.0772 1.0247 24 1 -0.3633 0.8489 -0.5793 25 1 -0.3633 -0.9261 -0.4456 26 1 3.1724 -0.8755 -1.2680 27 1 1.6127 -1.8598 -1.2682 28 1 2.9079 -3.2209 2.1949 29 1 0.4708 -4.6445 2.0912 30 1 0.4730 -3.6425 3.5624 31 1 2.7231 -5.6968 2.9503 32 1 1.0799 -4.8491 5.3571 33 1 2.0916 -7.2315 5.8344 34 1 3.4521 -6.7723 4.7824 35 1 3.2154 -4.8382 6.8269 36 1 5.0891 -4.2273 9.5182 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699229482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:20 Heat of formation + Delta-G solvation = -11.925676 kcal Electronic energy + Delta-G solvation = -15892.126958 eV Core-core repulsion = 13183.700042 eV Total energy + Delta-G solvation = -2708.426916 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.11050 -38.11324 -37.31157 -36.12497 -34.40767 -32.45048 -29.74720 -28.65092 -26.30127 -24.64899 -23.33879 -21.97645 -21.37077 -20.41641 -19.12177 -18.07584 -17.15211 -16.66054 -16.49089 -15.98239 -15.60349 -15.20005 -14.99650 -14.75663 -14.28851 -13.97661 -13.55639 -13.49784 -13.35816 -13.11173 -12.87600 -12.70580 -12.35977 -12.24485 -11.99969 -11.79855 -11.19020 -11.06114 -11.03164 -10.71459 -10.28100 -9.96198 -9.02873 -7.96831 -5.27147 1.04264 1.47928 1.51039 1.51175 1.57496 2.35211 2.56634 2.86892 3.36823 3.66617 3.72713 3.84383 3.95574 4.07744 4.21055 4.23196 4.45060 4.48960 4.64776 4.70163 4.83182 4.90535 4.91258 4.98215 4.98852 5.06788 5.18683 5.36591 5.46308 5.56047 5.64386 5.82032 6.25000 6.55850 7.24881 7.31040 8.04917 8.29083 9.26496 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042469 B = 0.003418 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.140402 B = 8188.903408 C = 8478.387867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.126 4.126 3 H 0.133 0.867 4 C -0.135 4.135 5 C -0.204 4.204 6 H 0.144 0.856 7 C 0.533 3.467 8 O -0.576 6.576 9 N -0.716 5.716 10 C 0.158 3.842 11 C -0.161 4.161 12 C -0.133 4.133 13 C 0.174 3.826 14 N -0.745 5.745 15 C -0.252 4.252 16 H 0.078 0.922 17 C -0.075 4.075 18 N -0.970 5.970 19 Si 0.978 3.022 20 H -0.275 1.275 21 H -0.295 1.295 22 H -0.277 1.277 23 H 0.044 0.956 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.131 0.869 27 H 0.090 0.910 28 H 0.414 0.586 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.131 0.869 32 H 0.106 0.894 33 H 0.030 0.970 34 H 0.034 0.966 35 H 0.374 0.626 36 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.972 6.366 -19.711 21.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.145 4.145 3 H 0.151 0.849 4 C -0.172 4.172 5 C -0.225 4.225 6 H 0.161 0.839 7 C 0.322 3.678 8 O -0.456 6.456 9 N -0.367 5.367 10 C 0.035 3.965 11 C -0.180 4.180 12 C -0.152 4.152 13 C 0.048 3.952 14 N -0.388 5.388 15 C -0.383 4.383 16 H 0.096 0.904 17 C -0.268 4.268 18 N -0.620 5.620 19 Si 0.806 3.194 20 H -0.201 1.201 21 H -0.221 1.221 22 H -0.203 1.203 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.149 0.851 27 H 0.109 0.891 28 H 0.250 0.750 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.148 0.852 32 H 0.124 0.876 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.206 0.794 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.751 6.237 -19.693 21.197 hybrid contribution 0.827 -0.274 1.210 1.491 sum -3.923 5.962 -18.484 19.814 Atomic orbital electron populations 1.21283 0.92967 1.01117 1.01214 1.22516 0.95617 0.94766 1.01583 0.84912 1.23178 1.03750 1.00701 0.89559 1.22369 1.02547 1.00755 0.96811 0.83856 1.20272 0.88060 0.81507 0.78007 1.90685 1.16255 1.75743 1.62941 1.45984 1.11297 1.27004 1.52437 1.20201 0.92331 0.88194 0.95786 1.22777 1.00895 0.99191 0.95121 1.23010 0.98384 0.98232 0.95579 1.19908 0.92900 0.93806 0.88584 1.42533 1.53027 1.11361 1.31851 1.19647 1.17757 0.94575 1.06349 0.90368 1.25633 1.03043 0.97303 1.00793 1.69821 1.48468 1.12309 1.31431 0.85155 0.78789 0.77417 0.78048 1.20109 1.22094 1.20327 0.93733 0.91578 0.93612 0.85091 0.89147 0.75015 0.90446 0.92497 0.85155 0.87565 0.95199 0.94848 0.79423 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.22 8.43 71.98 0.61 -1.61 16 2 C -0.13 -2.04 6.41 -10.77 -0.07 -2.11 16 3 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.13 -1.83 9.88 30.62 0.30 -1.52 16 5 C -0.20 -3.54 6.18 -11.54 -0.07 -3.62 16 6 H 0.14 1.91 8.14 -2.38 -0.02 1.89 16 7 C 0.53 13.11 7.59 87.66 0.67 13.78 16 8 O -0.58 -18.14 13.10 -3.04 -0.04 -18.18 16 9 N -0.72 -16.04 5.55 -466.78 -2.59 -18.63 16 10 C 0.16 3.89 6.11 85.63 0.52 4.42 16 11 C -0.16 -4.13 9.24 25.65 0.24 -3.89 16 12 C -0.13 -4.25 9.24 25.65 0.24 -4.02 16 13 C 0.17 6.88 6.70 85.63 0.57 7.45 16 14 N -0.74 -38.31 5.59 -347.16 -1.94 -40.25 16 15 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 16 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 17 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 18 N -0.97 -59.59 13.06 21.65 0.28 -59.31 16 19 Si 0.98 45.82 29.55 68.60 2.03 47.85 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H 0.04 1.11 7.25 -2.39 -0.02 1.09 16 24 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 25 H 0.04 1.08 7.02 -2.39 -0.02 1.06 16 26 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.09 1.41 8.05 -2.39 -0.02 1.39 16 28 H 0.41 7.57 8.46 -92.71 -0.78 6.78 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.57 7.79 -2.39 -0.02 1.55 16 31 H 0.13 2.99 7.84 -2.91 -0.02 2.97 16 32 H 0.11 3.46 7.84 -2.91 -0.02 3.44 16 33 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.03 1.28 7.79 -2.39 -0.02 1.26 16 35 H 0.37 20.51 7.66 -92.71 -0.71 19.80 16 36 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -68.80 308.17 1.63 -67.17 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: -0.42 Total: 29.63 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 4.31 Total: -8.28 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -4.25 Total: -118.18 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.04 Total: -18.18 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -68.80 1.63 -67.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699229482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.244 kcal (2) G-P(sol) polarization free energy of solvation -68.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds