Wall clock time and date at job start Sun Mar 29 2020 23:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86807 * 119.99954 * 2 1 4 4 H 1.48504 * 109.46899 * 240.00122 * 3 2 1 5 5 H 1.48496 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47095 * 120.00124 * 3 2 1 7 7 C 1.40045 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99923 * 179.97438 * 7 2 1 9 9 C 1.46379 * 119.99985 * 359.97438 * 7 2 1 10 10 O 1.21686 * 119.99938 * 359.97438 * 9 7 2 11 11 N 1.34770 * 119.99780 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99664 * 179.97438 * 11 9 7 13 13 C 1.50706 * 109.47014 * 179.97438 * 12 11 9 14 14 C 1.38241 * 119.98981 * 269.72617 * 13 12 11 15 15 C 1.38210 * 120.01139 * 179.72300 * 14 13 12 16 16 C 1.38349 * 119.98969 * 0.55498 * 15 14 13 17 17 Cl 1.73598 * 120.01695 * 179.70185 * 16 15 14 18 18 C 1.38361 * 119.97127 * 359.71727 * 16 15 14 19 19 C 1.38214 * 119.98666 * 0.02562 * 18 16 15 20 20 H 0.97008 * 120.00026 * 359.97438 * 1 2 3 21 21 H 0.97000 * 120.00231 * 359.97438 * 11 9 7 22 22 H 1.09000 * 109.46864 * 60.00469 * 12 11 9 23 23 H 1.09000 * 109.47078 * 299.99722 * 12 11 9 24 24 H 1.08002 * 119.99152 * 0.02562 * 14 13 12 25 25 H 1.08002 * 120.00562 * 180.27305 * 15 14 13 26 26 H 1.07999 * 120.00328 * 179.97438 * 18 16 15 27 27 H 1.07997 * 119.99198 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6964 -1.2126 5 1 1.2757 2.7465 -0.0006 6 1 3.0945 1.6965 1.2125 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0001 9 6 1.2750 -2.4805 0.0017 10 8 0.0582 -2.4805 0.0026 11 7 1.9489 -3.6476 0.0027 12 6 1.2164 -4.9164 0.0044 13 6 2.1957 -6.0619 0.0047 14 6 2.6395 -6.5918 -1.1925 15 6 3.5420 -7.6386 -1.1928 16 6 3.9926 -8.1636 0.0053 17 17 5.1202 -9.4834 0.0057 18 6 3.5438 -7.6364 1.2032 19 6 2.6453 -6.5861 1.2023 20 1 -0.4850 0.8401 0.0004 21 1 2.9189 -3.6476 0.0023 22 1 0.5895 -4.9751 -0.8853 23 1 0.5901 -4.9731 0.8947 24 1 2.2846 -6.1846 -2.1277 25 1 3.8920 -8.0497 -2.1282 26 1 3.8948 -8.0461 2.1388 27 1 2.2946 -6.1748 2.1373 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000060965.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:09 Heat of formation + Delta-G solvation = -52.732344 kcal Electronic energy + Delta-G solvation = -13823.100147 eV Core-core repulsion = 11184.228034 eV Total energy + Delta-G solvation = -2638.872112 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 239.045 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.55425 -39.18542 -37.50028 -35.39789 -34.47851 -32.06645 -31.95932 -28.74088 -26.44094 -23.81831 -22.54138 -21.67058 -19.38312 -18.04596 -17.45852 -16.69771 -16.49932 -16.06189 -15.66949 -15.03481 -14.51540 -14.46522 -14.45865 -14.03566 -13.37939 -13.16671 -12.71040 -12.66055 -12.43788 -12.40217 -12.27000 -12.03932 -11.77944 -10.91827 -10.03879 -10.03635 -9.56830 -9.51685 -8.28848 -6.86032 0.04738 0.30247 1.11698 1.41281 1.44483 1.56385 2.25011 2.46775 2.53851 3.32437 3.59876 3.73487 3.80080 3.94319 4.26429 4.34408 4.64398 4.68010 4.79840 4.99974 5.17836 5.20787 5.31942 5.58653 5.76762 5.86586 6.18457 6.25183 6.86544 7.52126 8.47606 8.66534 Molecular weight = 239.05amu Principal moments of inertia in cm(-1) A = 0.051003 B = 0.004390 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.859369 B = 6376.039300 C = 6620.170080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.028 3.972 3 Si 0.998 3.002 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.573 4.573 8 H 0.087 0.913 9 C 0.538 3.462 10 O -0.632 6.632 11 N -0.749 5.749 12 C 0.173 3.827 13 C -0.095 4.095 14 C -0.095 4.095 15 C -0.109 4.109 16 C -0.040 4.040 17 Cl -0.066 7.066 18 C -0.109 4.109 19 C -0.095 4.095 20 H 0.275 0.725 21 H 0.394 0.606 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.138 0.862 25 H 0.153 0.847 26 H 0.153 0.847 27 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.794 -14.347 0.011 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.609 4.609 8 H 0.105 0.895 9 C 0.343 3.657 10 O -0.520 6.520 11 N -0.404 5.404 12 C 0.049 3.951 13 C -0.096 4.096 14 C -0.114 4.114 15 C -0.128 4.128 16 C -0.066 4.066 17 Cl -0.038 7.038 18 C -0.128 4.128 19 C -0.114 4.114 20 H 0.085 0.915 21 H 0.228 0.772 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.156 0.844 25 H 0.171 0.829 26 H 0.171 0.829 27 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.830 -14.406 0.012 17.441 hybrid contribution 0.386 0.557 -0.001 0.678 sum 10.216 -13.849 0.011 17.209 Atomic orbital electron populations 1.70179 1.09518 1.29064 1.36330 1.26984 0.95544 1.04974 0.91200 0.85062 0.78191 0.74691 0.80294 1.17837 1.19906 1.17828 1.21396 0.94735 0.90021 1.54793 0.89460 1.18612 0.86813 0.84231 0.76067 1.90556 1.16195 1.87881 1.57331 1.45856 1.09211 1.04108 1.81228 1.19790 0.92752 0.82091 1.00460 1.20004 0.98400 0.96664 0.94514 1.21189 0.96480 0.95632 0.98076 1.21223 0.97278 0.96434 0.97817 1.21092 0.96580 0.93501 0.95460 1.98366 1.60079 1.46350 1.98965 1.21226 0.97338 0.96370 0.97820 1.21189 0.96491 0.95622 0.98076 0.91509 0.77227 0.93585 0.93577 0.84450 0.82888 0.82889 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.29 11.83 21.83 0.26 -50.03 15 2 C 0.03 1.57 5.50 85.30 0.47 2.04 15 3 Si 1.00 40.68 29.56 68.60 2.03 42.71 15 4 H -0.25 -9.74 7.11 99.48 0.71 -9.03 15 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 6 H -0.25 -9.74 7.11 99.48 0.71 -9.03 15 7 C -0.57 -32.39 9.54 24.83 0.24 -32.16 15 8 H 0.09 4.41 7.85 -2.91 -0.02 4.39 15 9 C 0.54 31.21 7.75 86.36 0.67 31.88 15 10 O -0.63 -42.45 15.02 -4.30 -0.06 -42.51 15 11 N -0.75 -33.55 5.54 -471.13 -2.61 -36.16 15 12 C 0.17 6.65 5.80 85.63 0.50 7.14 15 13 C -0.10 -2.74 5.25 -19.86 -0.10 -2.85 15 14 C -0.10 -2.37 9.70 22.26 0.22 -2.16 15 15 C -0.11 -2.30 9.83 22.29 0.22 -2.08 15 16 C -0.04 -0.83 6.32 22.33 0.14 -0.69 15 17 Cl -0.07 -1.24 28.96 -2.72 -0.08 -1.31 15 18 C -0.11 -2.30 9.83 22.29 0.22 -2.08 15 19 C -0.10 -2.37 9.70 22.27 0.22 -2.16 15 20 H 0.28 15.25 8.29 -92.70 -0.77 14.48 15 21 H 0.39 15.50 8.44 -92.71 -0.78 14.71 15 22 H 0.05 1.87 8.08 -2.39 -0.02 1.85 15 23 H 0.05 1.88 8.09 -2.39 -0.02 1.86 15 24 H 0.14 3.26 8.06 -2.91 -0.02 3.24 15 25 H 0.15 2.52 8.06 -2.91 -0.02 2.50 15 26 H 0.15 2.52 8.06 -2.91 -0.02 2.50 15 27 H 0.14 3.27 8.06 -2.91 -0.02 3.24 15 Total: -1.00 -72.51 264.43 2.72 -69.78 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.41 Total: 20.63 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 2.78 Total: -3.11 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -2.35 Total: -86.19 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -0.06 Total: -42.51 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.31 kcal Total: -72.51 2.72 -69.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000060965.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.051 kcal (2) G-P(sol) polarization free energy of solvation -72.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds