Wall clock time and date at job start Sun Mar 29 2020 22:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47645 * 2 1 4 4 C 1.53000 * 109.47124 * 239.99716 * 2 1 3 5 5 C 1.53001 * 109.47535 * 175.00295 * 4 2 1 6 6 C 1.50697 * 109.47458 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99662 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00115 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99921 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99974 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47500 * 60.00454 * 10 8 6 12 12 H 1.48501 * 109.47186 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47291 * 300.00552 * 10 8 6 14 14 N 1.46904 * 109.46996 * 120.00161 * 2 1 3 15 15 C 1.49455 * 111.00225 * 53.36231 * 14 2 1 16 16 C 1.50542 * 104.84296 * 247.64740 * 15 14 2 17 17 H 1.08994 * 112.14080 * 77.92176 * 16 15 14 18 18 C 1.49349 * 131.80452 * 236.96014 * 16 15 14 19 19 C 1.56731 * 80.76848 * 135.45196 * 18 16 15 20 20 C 1.49647 * 81.04487 * 314.10022 * 19 18 16 21 21 N 1.46901 * 113.84175 * 292.76599 * 20 19 18 22 22 C 1.49950 * 110.99553 * 294.99567 * 14 2 1 23 23 H 1.09000 * 109.46675 * 300.00556 * 1 2 3 24 24 H 1.08998 * 109.46886 * 59.99801 * 1 2 3 25 25 H 1.08995 * 109.47645 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47208 * 55.00091 * 4 2 1 27 27 H 1.09001 * 109.47066 * 295.00190 * 4 2 1 28 28 H 1.09007 * 109.47006 * 59.99765 * 5 4 2 29 29 H 1.08997 * 109.47094 * 300.00446 * 5 4 2 30 30 H 0.96994 * 119.99861 * 179.97438 * 9 8 6 31 31 H 1.08999 * 110.36223 * 6.48348 * 15 14 2 32 32 H 1.08994 * 110.36233 * 128.80352 * 15 14 2 33 33 H 1.08997 * 114.65083 * 22.48342 * 18 16 15 34 34 H 1.09004 * 114.68414 * 248.41614 * 18 16 15 35 35 H 1.08998 * 114.60547 * 201.05825 * 19 18 16 36 36 H 1.09010 * 114.59798 * 67.13721 * 19 18 16 37 37 H 1.00893 * 111.00350 * 142.61121 * 21 20 19 38 38 H 1.00896 * 111.00063 * 266.57480 * 21 20 19 39 39 H 1.09000 * 110.86902 * 265.81902 * 22 14 2 40 40 H 1.08994 * 110.87063 * 29.29596 * 22 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6135 -1.3137 6 6 4.0672 -1.3245 -2.5438 7 1 3.3687 -1.8048 -3.2129 8 6 5.4184 -1.3608 -2.8155 9 7 6.2689 -0.7754 -2.0010 10 14 6.0410 -2.2415 -4.3406 11 1 5.4487 -1.6159 -5.5501 12 1 7.5210 -2.1369 -4.4032 13 1 5.6484 -3.6724 -4.2809 14 7 2.0196 -0.6926 1.1995 15 6 1.4132 -2.0534 1.3173 16 6 0.5223 -1.9750 2.5283 17 1 -0.4175 -1.4660 2.3146 18 6 0.4847 -2.7734 3.7899 19 6 0.3307 -1.3367 4.3969 20 6 1.4518 -1.0676 3.4429 21 7 2.7073 -1.7434 3.7962 22 6 1.6410 0.0544 2.4433 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6054 -0.2619 -2.1369 27 1 1.7516 -1.7716 -1.2055 28 1 3.9995 -1.0730 -0.4259 29 1 3.8533 0.4367 -1.3573 30 1 7.2195 -0.8013 -2.1920 31 1 0.8259 -2.2852 0.4288 32 1 2.1901 -2.8033 1.4658 33 1 1.4202 -3.2742 4.0391 34 1 -0.3935 -3.4098 3.8999 35 1 0.6018 -1.2573 5.4497 36 1 -0.6060 -0.8373 4.1489 37 1 3.1903 -2.0639 2.9704 38 1 3.2983 -1.1419 4.3502 39 1 2.4447 0.7213 2.7556 40 1 0.7140 0.6085 2.2965 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246855152.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:32 Heat of formation + Delta-G solvation = 91.023185 kcal Electronic energy + Delta-G solvation = -18018.646592 eV Core-core repulsion = 15450.516969 eV Total energy + Delta-G solvation = -2568.129624 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.80060 -37.06248 -33.35162 -31.92387 -31.11771 -29.14829 -28.37112 -26.01488 -24.65914 -23.47690 -21.33472 -20.43945 -19.54752 -18.71064 -16.48246 -16.13375 -15.32473 -15.11413 -14.57406 -14.41964 -14.26484 -13.32000 -13.01953 -12.77910 -12.53121 -12.20961 -12.14505 -11.89329 -11.60185 -11.50234 -11.34837 -11.09720 -10.85779 -10.63748 -10.54666 -10.43845 -10.14427 -9.65138 -9.23627 -9.03452 -8.91232 -8.43813 -8.24105 -7.90981 -5.89490 -3.91035 3.37939 3.42230 3.44714 3.65021 4.17142 4.39960 4.53220 4.59680 4.88625 5.18275 5.29893 5.35780 5.42836 5.45876 5.53355 5.56287 5.66803 5.70461 5.82658 5.87560 6.01735 6.02809 6.09679 6.18575 6.27684 6.35277 6.42958 6.61489 6.64394 6.83413 7.18878 7.27231 7.29513 7.48538 7.56784 7.82970 8.05014 8.19675 8.55751 9.17452 9.71745 11.21520 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.035489 B = 0.005782 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.792318 B = 4841.372773 C = 5119.084123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.073 3.927 3 H 0.076 0.924 4 C -0.101 4.101 5 C 0.031 3.969 6 C -0.520 4.520 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.888 3.112 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.496 5.496 15 C 0.052 3.948 16 C -0.179 4.179 17 H 0.085 0.915 18 C -0.098 4.098 19 C -0.098 4.098 20 C 0.041 3.959 21 N -0.814 5.814 22 C 0.028 3.972 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.008 0.992 30 H 0.259 0.741 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.358 0.642 38 H 0.339 0.661 39 H 0.074 0.926 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.113 -0.165 11.680 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.036 4.036 3 H 0.094 0.906 4 C -0.138 4.138 5 C -0.006 4.006 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.716 3.284 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.220 5.220 15 C -0.075 4.075 16 C -0.199 4.199 17 H 0.103 0.897 18 C -0.136 4.136 19 C -0.136 4.136 20 C -0.053 4.053 21 N -0.346 5.346 22 C -0.101 4.101 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.141 0.859 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.174 0.826 38 H 0.152 0.848 39 H 0.092 0.908 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.773 -0.670 11.977 16.807 hybrid contribution -0.027 0.571 -1.561 1.662 sum -11.800 -0.099 10.416 15.740 Atomic orbital electron populations 1.22567 0.98779 1.01754 1.01233 1.21992 0.91171 0.98732 0.91697 0.90568 1.21706 1.00820 0.98275 0.93038 1.18978 0.88048 0.96596 0.96972 1.21294 0.91859 1.34172 1.08502 0.93188 1.24989 0.97107 0.95735 0.96504 1.69967 1.02227 1.44265 1.36977 0.86738 0.77596 0.80287 0.83810 1.20418 1.21368 1.20356 1.65716 1.54298 1.01143 1.00795 1.22081 0.96529 0.92476 0.96402 1.23894 0.98886 1.02590 0.94491 0.89699 1.22851 1.03060 0.94594 0.93115 1.22595 0.95600 0.97506 0.97896 1.22425 0.91291 0.94162 0.97415 1.59102 1.07026 1.41811 1.26644 1.22959 1.00115 0.95921 0.91122 0.93452 0.92335 0.92438 0.93361 0.93344 0.95144 0.97376 0.93162 0.91529 0.90261 0.85920 0.93018 0.91436 0.89671 0.82593 0.84810 0.90810 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 8.01 37.16 0.30 -2.30 16 2 C 0.07 1.25 2.32 -67.71 -0.16 1.10 16 3 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 4 C -0.10 -2.10 4.55 -26.73 -0.12 -2.22 16 5 C 0.03 0.82 4.86 -27.88 -0.14 0.68 16 6 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 7 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -27.48 13.29 55.43 0.74 -26.74 16 10 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 N -0.50 -8.13 4.47 -224.21 -1.00 -9.13 16 15 C 0.05 0.79 4.76 -3.63 -0.02 0.78 16 16 C -0.18 -2.24 4.02 -105.67 -0.42 -2.67 16 17 H 0.08 1.05 6.79 -51.93 -0.35 0.69 16 18 C -0.10 -1.11 7.98 -40.39 -0.32 -1.43 16 19 C -0.10 -1.02 7.94 -41.66 -0.33 -1.35 16 20 C 0.04 0.50 2.66 -144.66 -0.38 0.12 16 21 N -0.81 -10.07 7.29 -10.40 -0.08 -10.14 16 22 C 0.03 0.39 6.01 -2.90 -0.02 0.37 16 23 H 0.05 0.60 6.25 -51.93 -0.32 0.28 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.80 6.03 -51.93 -0.31 0.49 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 1.01 6.59 -51.93 -0.34 0.67 16 28 H 0.03 0.86 7.75 -51.93 -0.40 0.45 16 29 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.07 1.05 4.94 -51.93 -0.26 0.79 16 32 H 0.08 1.29 7.12 -51.93 -0.37 0.92 16 33 H 0.12 1.50 6.39 -51.93 -0.33 1.17 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.81 7.50 -51.92 -0.39 0.42 16 37 H 0.36 5.10 6.88 -39.30 -0.27 4.83 16 38 H 0.34 3.85 9.08 -39.29 -0.36 3.49 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.70 5.94 -51.93 -0.31 0.39 16 LS Contribution 297.85 15.07 4.49 4.49 Total: -1.00 -29.75 297.85 -9.42 -39.17 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.52 Total: 5.99 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -2.02 Total: -20.72 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.34 Total: -46.02 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.75 -9.42 -39.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246855152.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.191 kcal (2) G-P(sol) polarization free energy of solvation -29.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds