Wall clock time and date at job start Sun Mar 29 2020 22:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53010 * 109.46974 * 84.51586 * 3 2 1 5 5 N 1.46493 * 109.47094 * 179.97438 * 4 3 2 6 6 C 1.47062 * 125.40573 * 90.00313 * 5 4 3 7 7 C 1.54102 * 103.98842 * 180.02562 * 6 5 4 8 8 N 1.47047 * 103.86597 * 359.92478 * 7 6 5 9 9 C 1.46495 * 125.41333 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47348 * 90.00407 * 9 8 7 11 11 H 1.07997 * 119.99639 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00446 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99902 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00231 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46834 * 89.99868 * 14 12 10 16 16 H 1.48500 * 109.46974 * 209.99979 * 14 12 10 17 17 H 1.48500 * 109.47107 * 329.99929 * 14 12 10 18 18 C 1.33956 * 109.18037 * 0.02562 * 8 7 6 19 19 S 1.71190 * 123.04363 * 179.97438 * 18 8 7 20 20 H 1.08996 * 109.47385 * 324.51803 * 3 2 1 21 21 H 1.08994 * 109.47337 * 204.51191 * 3 2 1 22 22 H 1.09002 * 109.46606 * 59.99560 * 4 3 2 23 23 H 1.08994 * 109.46766 * 299.99955 * 4 3 2 24 24 H 1.09002 * 110.54996 * 61.39999 * 6 5 4 25 25 H 1.08997 * 110.55013 * 298.73283 * 6 5 4 26 26 H 1.09001 * 110.55154 * 118.52658 * 7 6 5 27 27 H 1.09000 * 110.54868 * 241.18676 * 7 6 5 28 28 H 1.09008 * 109.47393 * 210.00511 * 9 8 7 29 29 H 1.09003 * 109.47621 * 330.00284 * 9 8 7 30 30 H 0.96999 * 119.99649 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.1370 -1.4360 5 7 4.5830 -0.1357 -1.4361 6 6 5.4360 -1.3281 -1.3215 7 6 6.8701 -0.7667 -1.3747 8 7 6.6756 0.6840 -1.5157 9 6 7.7468 1.6788 -1.6108 10 6 8.1159 1.8829 -3.0576 11 1 7.6035 1.3274 -3.8291 12 6 9.1077 2.7787 -3.3964 13 7 9.7314 3.4556 -2.4569 14 14 9.5657 3.0310 -5.1897 15 1 8.7323 4.1170 -5.7653 16 1 11.0000 3.4035 -5.2866 17 1 9.3289 1.7732 -5.9428 18 6 5.3633 0.9516 -1.5423 19 16 4.7369 2.5373 -1.6959 20 1 2.9717 -0.8360 0.5965 21 1 2.9709 0.9358 0.4263 22 1 2.7542 0.6997 -2.0325 23 1 2.7551 -1.0721 -1.8623 24 1 5.2600 -2.0062 -2.1566 25 1 5.2583 -1.8361 -0.3736 26 1 7.4043 -0.9933 -0.4520 27 1 7.4066 -1.1683 -2.2344 28 1 7.4047 2.6229 -1.1865 29 1 8.6190 1.3276 -1.0594 30 1 10.4294 4.0855 -2.6953 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001615374.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:58 Heat of formation + Delta-G solvation = 59.535796 kcal Electronic energy + Delta-G solvation = -14493.806489 eV Core-core repulsion = 12029.972241 eV Total energy + Delta-G solvation = -2463.834248 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.52724 -37.07681 -35.30450 -33.07182 -31.52029 -30.11188 -27.66233 -24.89953 -23.50251 -21.99262 -21.05074 -18.01996 -17.10629 -16.79694 -15.89086 -15.72999 -15.01088 -14.64322 -14.44603 -14.06325 -13.57036 -12.98296 -12.80421 -12.75982 -12.43751 -12.23405 -11.91790 -11.50117 -11.40303 -11.17961 -10.89222 -10.73768 -10.39590 -10.22733 -9.69631 -8.53748 -8.19049 -7.02636 -6.67014 -6.15278 -4.20884 2.06391 2.25506 2.66782 2.67137 3.17721 3.28268 3.35186 3.36550 3.73865 3.97050 4.31590 4.38746 4.59500 4.69072 4.90719 5.10431 5.13296 5.21060 5.33619 5.56304 5.68651 5.73454 5.97845 6.63762 6.87663 7.17777 7.41797 7.55457 7.70303 7.82762 8.00537 8.79161 9.43809 10.92822 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.039185 B = 0.005962 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.387051 B = 4695.025992 C = 4970.580209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.217 3.783 3 C -0.045 4.045 4 C 0.151 3.849 5 N -0.597 5.597 6 C 0.081 3.919 7 C 0.073 3.927 8 N -0.535 5.535 9 C 0.258 3.742 10 C -0.528 4.528 11 H 0.059 0.941 12 C 0.068 3.932 13 N -0.890 5.890 14 Si 0.903 3.097 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.275 1.275 18 C 0.556 3.444 19 S -0.661 6.661 20 H 0.107 0.893 21 H 0.122 0.878 22 H 0.111 0.889 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.912 -13.494 4.403 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.101 4.101 3 C -0.087 4.087 4 C 0.026 3.974 5 N -0.312 5.312 6 C -0.044 4.044 7 C -0.053 4.053 8 N -0.240 5.240 9 C 0.141 3.859 10 C -0.567 4.567 11 H 0.077 0.923 12 C -0.135 4.135 13 N -0.529 5.529 14 Si 0.730 3.270 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.200 1.200 18 C 0.197 3.803 19 S -0.530 6.530 20 H 0.125 0.875 21 H 0.140 0.860 22 H 0.129 0.871 23 H 0.107 0.893 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.700 -12.427 4.346 15.252 hybrid contribution 1.217 -0.734 -0.873 1.667 sum -6.483 -13.161 3.474 15.077 Atomic orbital electron populations 1.81230 1.12917 1.09231 1.08107 1.28849 0.94852 0.92920 0.93490 1.19693 0.81866 1.06832 1.00323 1.21193 0.75779 1.05138 0.95254 1.47104 1.05633 1.04946 1.73549 1.22735 0.89218 0.89262 1.03229 1.22744 0.96089 0.82414 1.04102 1.48231 1.04795 1.07571 1.63372 1.19751 0.81254 0.86201 0.98698 1.21176 1.19450 1.24697 0.91380 0.92304 1.24851 0.95746 0.94965 0.97960 1.69915 1.24506 1.25911 1.32525 0.86425 0.77471 0.78726 0.84385 1.20221 1.21118 1.20011 1.22304 0.84531 0.92526 0.80960 1.93204 1.79225 1.05440 1.75098 0.87480 0.85962 0.87082 0.89258 0.89555 0.89540 0.89293 0.88724 0.91119 0.93949 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.94 18.54 42.15 0.78 -5.16 16 2 C 0.22 2.31 15.43 -20.76 -0.32 1.99 16 3 C -0.05 -0.38 6.03 -29.51 -0.18 -0.56 16 4 C 0.15 1.49 5.79 -4.04 -0.02 1.47 16 5 N -0.60 -7.51 2.97 -174.99 -0.52 -8.03 16 6 C 0.08 0.73 7.67 -3.16 -0.02 0.70 16 7 C 0.07 0.90 7.68 -3.17 -0.02 0.88 16 8 N -0.53 -10.05 2.94 -176.37 -0.52 -10.57 16 9 C 0.26 6.14 5.57 -5.19 -0.03 6.12 16 10 C -0.53 -14.02 9.39 -34.44 -0.32 -14.35 16 11 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 12 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 13 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 14 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 18 C 0.56 10.25 7.63 -88.12 -0.67 9.58 16 19 S -0.66 -15.39 28.59 -107.50 -3.07 -18.46 16 20 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 22 H 0.11 1.40 7.36 -51.93 -0.38 1.01 16 23 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.07 1.93 7.34 -51.92 -0.38 1.55 16 29 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 LS Contribution 283.78 15.07 4.28 4.28 Total: -1.00 -34.44 283.78 -8.72 -43.16 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: -3.69 Total: -4.52 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -1.69 Total: 7.59 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.48 Total: -48.24 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -15.39 SS G_CDS: -3.07 Total: -18.46 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -34.44 -8.72 -43.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001615374.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.699 kcal (2) G-P(sol) polarization free energy of solvation -34.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds