Wall clock time and date at job start Sun Mar 29 2020 22:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53010 * 109.46974 * 84.51586 * 3 2 1 5 5 N 1.46493 * 109.47094 * 179.97438 * 4 3 2 6 6 C 1.47062 * 125.40573 * 90.00313 * 5 4 3 7 7 C 1.54102 * 103.98842 * 180.02562 * 6 5 4 8 8 N 1.47047 * 103.86597 * 359.92478 * 7 6 5 9 9 C 1.46495 * 125.41333 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47348 * 90.00407 * 9 8 7 11 11 H 1.07997 * 119.99639 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00446 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99902 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00231 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46834 * 89.99868 * 14 12 10 16 16 H 1.48500 * 109.46974 * 209.99979 * 14 12 10 17 17 H 1.48500 * 109.47107 * 329.99929 * 14 12 10 18 18 C 1.33956 * 109.18037 * 0.02562 * 8 7 6 19 19 S 1.71190 * 123.04363 * 179.97438 * 18 8 7 20 20 H 1.08996 * 109.47385 * 324.51803 * 3 2 1 21 21 H 1.08994 * 109.47337 * 204.51191 * 3 2 1 22 22 H 1.09002 * 109.46606 * 59.99560 * 4 3 2 23 23 H 1.08994 * 109.46766 * 299.99955 * 4 3 2 24 24 H 1.09002 * 110.54996 * 61.39999 * 6 5 4 25 25 H 1.08997 * 110.55013 * 298.73283 * 6 5 4 26 26 H 1.09001 * 110.55154 * 118.52658 * 7 6 5 27 27 H 1.09000 * 110.54868 * 241.18676 * 7 6 5 28 28 H 1.09008 * 109.47393 * 210.00511 * 9 8 7 29 29 H 1.09003 * 109.47621 * 330.00284 * 9 8 7 30 30 H 0.96999 * 119.99649 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.1370 -1.4360 5 7 4.5830 -0.1357 -1.4361 6 6 5.4360 -1.3281 -1.3215 7 6 6.8701 -0.7667 -1.3747 8 7 6.6756 0.6840 -1.5157 9 6 7.7468 1.6788 -1.6108 10 6 8.1159 1.8829 -3.0576 11 1 7.6035 1.3274 -3.8291 12 6 9.1077 2.7787 -3.3964 13 7 9.7314 3.4556 -2.4569 14 14 9.5657 3.0310 -5.1897 15 1 8.7323 4.1170 -5.7653 16 1 11.0000 3.4035 -5.2866 17 1 9.3289 1.7732 -5.9428 18 6 5.3633 0.9516 -1.5423 19 16 4.7369 2.5373 -1.6959 20 1 2.9717 -0.8360 0.5965 21 1 2.9709 0.9358 0.4263 22 1 2.7542 0.6997 -2.0325 23 1 2.7551 -1.0721 -1.8623 24 1 5.2600 -2.0062 -2.1566 25 1 5.2583 -1.8361 -0.3736 26 1 7.4043 -0.9933 -0.4520 27 1 7.4066 -1.1683 -2.2344 28 1 7.4047 2.6229 -1.1865 29 1 8.6190 1.3276 -1.0594 30 1 10.4294 4.0855 -2.6953 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001615374.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:58 Heat of formation + Delta-G solvation = 37.175816 kcal Electronic energy + Delta-G solvation = -14494.776091 eV Core-core repulsion = 12029.972241 eV Total energy + Delta-G solvation = -2464.803850 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.75512 -38.03357 -36.58869 -34.84840 -32.77631 -31.13052 -29.39986 -26.17011 -24.90768 -23.22833 -22.38425 -19.05703 -18.61145 -18.33464 -16.97414 -16.93567 -16.42992 -16.18081 -15.50976 -15.26631 -14.81277 -14.49044 -13.86025 -13.77639 -13.42821 -13.37422 -13.34704 -13.00638 -12.70242 -12.60290 -12.42853 -12.18046 -12.10205 -11.87671 -11.53438 -10.62693 -9.41268 -8.78839 -8.49248 -8.21394 -6.34537 0.62206 0.99500 1.39460 1.44794 1.51186 1.61832 1.81798 1.89972 2.37038 2.52532 3.10966 3.13672 3.41877 3.75167 3.95668 4.15539 4.29289 4.48307 4.59951 4.73560 4.84445 4.89365 5.00105 5.15015 5.37539 5.48984 5.67658 5.97449 6.09229 6.23617 6.58574 6.72227 7.33807 8.85307 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.039185 B = 0.005962 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.387051 B = 4695.025992 C = 4970.580209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.245 3.755 3 C -0.032 4.032 4 C 0.145 3.855 5 N -0.572 5.572 6 C 0.086 3.914 7 C 0.062 3.938 8 N -0.548 5.548 9 C 0.276 3.724 10 C -0.535 4.535 11 H 0.051 0.949 12 C 0.018 3.982 13 N -0.923 5.923 14 Si 0.962 3.038 15 H -0.286 1.286 16 H -0.275 1.275 17 H -0.262 1.262 18 C 0.574 3.426 19 S -0.779 6.779 20 H 0.155 0.845 21 H 0.104 0.896 22 H 0.078 0.922 23 H 0.137 0.863 24 H 0.121 0.879 25 H 0.140 0.860 26 H 0.115 0.885 27 H 0.098 0.902 28 H 0.026 0.974 29 H 0.042 0.958 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.778 -17.226 4.374 18.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.072 4.072 3 C -0.074 4.074 4 C 0.022 3.978 5 N -0.284 5.284 6 C -0.037 4.037 7 C -0.062 4.062 8 N -0.252 5.252 9 C 0.157 3.843 10 C -0.574 4.574 11 H 0.070 0.930 12 C -0.182 4.182 13 N -0.562 5.562 14 Si 0.787 3.213 15 H -0.213 1.213 16 H -0.200 1.200 17 H -0.186 1.186 18 C 0.209 3.791 19 S -0.650 6.650 20 H 0.172 0.828 21 H 0.122 0.878 22 H 0.097 0.903 23 H 0.155 0.845 24 H 0.139 0.861 25 H 0.157 0.843 26 H 0.133 0.867 27 H 0.116 0.884 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.600 -16.256 4.327 18.460 hybrid contribution 1.176 0.284 -0.821 1.462 sum -6.424 -15.973 3.506 17.569 Atomic orbital electron populations 1.81268 1.14618 1.11136 1.09837 1.29117 0.94994 0.91235 0.91867 1.19704 0.80092 1.07859 0.99697 1.21462 0.73947 1.06275 0.96118 1.47327 1.06622 1.04335 1.70137 1.23207 0.85425 0.87428 1.07621 1.23231 0.99291 0.78018 1.05675 1.47941 1.03876 1.09956 1.63417 1.19082 0.82280 0.86029 0.96948 1.21424 1.19023 1.24394 0.92533 0.93037 1.25655 0.95940 0.94822 1.01800 1.70015 1.25170 1.26632 1.34390 0.85499 0.77364 0.78641 0.79800 1.21279 1.20015 1.18608 1.21704 0.84954 0.91768 0.80650 1.93409 1.80398 1.11355 1.79830 0.82777 0.87789 0.90340 0.84522 0.86122 0.84253 0.86709 0.88420 0.95576 0.93977 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.82 18.54 20.01 0.37 -12.45 16 2 C 0.25 4.71 15.43 89.44 1.38 6.09 16 3 C -0.03 -0.43 6.03 28.79 0.17 -0.25 16 4 C 0.14 2.37 5.79 86.38 0.50 2.87 16 5 N -0.57 -12.24 2.97 -707.53 -2.10 -14.34 16 6 C 0.09 0.98 7.67 86.64 0.66 1.65 16 7 C 0.06 1.28 7.68 86.65 0.67 1.94 16 8 N -0.55 -19.96 2.94 -711.90 -2.09 -22.05 16 9 C 0.28 13.44 5.57 85.64 0.48 13.92 16 10 C -0.53 -28.78 9.39 25.60 0.24 -28.54 16 11 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 12 C 0.02 0.98 5.46 84.65 0.46 1.44 16 13 N -0.92 -53.40 13.29 21.45 0.28 -53.11 16 14 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 15 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 16 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 18 C 0.57 20.67 7.63 179.47 1.37 22.04 16 19 S -0.78 -38.08 28.59 -56.49 -1.62 -39.70 16 20 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 21 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 22 H 0.08 1.91 7.36 -2.39 -0.02 1.89 16 23 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.03 1.51 7.34 -2.38 -0.02 1.49 16 29 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -82.62 283.78 3.95 -78.68 By element: Atomic # 1 Polarization: -5.07 SS G_CDS: 1.14 Total: -3.93 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 5.93 Total: 21.16 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -3.53 Total: -101.95 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -38.08 SS G_CDS: -1.62 Total: -39.70 kcal Total: -82.62 3.95 -78.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001615374.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.854 kcal (2) G-P(sol) polarization free energy of solvation -82.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds