Wall clock time and date at job start Sun Mar 29 2020 21:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35895 * 117.00288 * 2 1 4 4 C 1.38843 * 119.98037 * 0.02562 * 3 2 1 5 5 C 1.37970 * 120.01308 * 179.69982 * 4 3 2 6 6 C 1.38982 * 119.98531 * 0.55717 * 5 4 3 7 7 O 1.35715 * 120.01653 * 179.72014 * 6 5 4 8 8 C 1.22293 * 117.00048 * 354.26522 * 7 6 5 9 9 H 1.08005 * 119.99886 * 5.10096 * 8 7 6 10 10 C 1.46600 * 119.99927 * 185.09691 * 8 7 6 11 11 N 1.29382 * 120.00456 * 0.02562 * 10 8 7 12 12 Si 1.86809 * 119.99854 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47204 * 60.00294 * 12 10 8 14 14 H 1.48499 * 109.46772 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46942 * 299.99736 * 12 10 8 16 16 C 1.38931 * 119.96307 * 359.44267 * 6 5 4 17 17 N 1.48020 * 120.00454 * 180.25324 * 16 6 5 18 18 O 1.31698 * 119.99856 * 180.02562 * 17 16 6 19 19 O 1.31696 * 119.99914 * 0.02562 * 17 16 6 20 20 C 1.38017 * 119.99112 * 0.27943 * 16 6 5 21 21 H 1.08999 * 109.47106 * 59.99960 * 1 2 3 22 22 H 1.09000 * 109.47155 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46850 * 299.99551 * 1 2 3 24 24 H 1.08005 * 119.99432 * 359.97438 * 4 3 2 25 25 H 1.08004 * 120.00903 * 180.30360 * 5 4 3 26 26 H 0.96993 * 120.00214 * 180.02562 * 11 10 8 27 27 H 1.07994 * 119.99426 * 179.97438 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2894 2.3750 0.0005 5 6 1.9152 3.6047 0.0068 6 6 3.3030 3.6778 0.0009 7 8 3.9192 4.8871 0.0013 8 6 3.2047 5.8742 -0.1019 9 1 2.1302 5.7652 -0.1050 10 6 3.8068 7.2055 -0.2212 11 7 5.0940 7.3361 -0.2179 12 14 2.7155 8.7135 -0.3781 13 1 1.8435 8.8202 0.8191 14 1 3.5626 9.9286 -0.4840 15 1 1.8730 8.5904 -1.5948 16 6 4.0593 2.5124 0.0003 17 7 5.5375 2.5892 -0.0003 18 8 6.2543 1.4844 -0.0013 19 8 6.1359 3.7624 0.0001 20 6 3.4321 1.2830 -0.0001 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 0.2109 2.3181 0.0005 25 1 1.3266 4.5102 0.0122 26 1 5.4924 8.2170 -0.2965 27 1 4.0199 0.3770 -0.0010 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005429463.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:32 Heat of formation + Delta-G solvation = 12.041469 kcal Electronic energy + Delta-G solvation = -16726.426362 eV Core-core repulsion = 13649.653888 eV Total energy + Delta-G solvation = -3076.772473 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.15585 -39.13558 -37.14367 -35.65409 -33.76033 -32.34133 -30.71599 -29.27377 -26.98392 -26.02189 -24.90966 -22.05464 -21.09818 -19.20782 -18.36829 -17.40326 -16.40081 -15.58789 -15.48768 -15.43052 -15.18870 -15.07898 -14.50194 -13.88086 -13.72206 -13.09089 -12.66126 -12.29300 -11.97168 -11.94742 -11.63757 -11.13582 -10.86877 -10.45162 -10.14190 -9.74281 -9.39792 -9.15585 -8.95445 -8.63854 -7.74303 -7.49356 -4.31228 0.65357 2.01676 2.39537 2.50651 2.62303 2.64891 2.98743 3.16566 3.79471 3.86601 4.29380 4.42754 5.18312 5.33707 5.35126 5.36128 5.60568 5.70604 5.89550 6.01835 6.38427 6.50864 6.54836 6.73701 6.88066 7.01983 7.43986 7.78147 7.96367 8.78702 8.90291 9.34093 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.023874 B = 0.008431 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.554650 B = 3320.399819 C = 4474.813064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.322 6.322 3 C 0.012 3.988 4 C -0.126 4.126 5 C -0.159 4.159 6 C 0.029 3.971 7 O -0.008 6.008 8 C -0.307 4.307 9 H 0.114 0.886 10 C 0.034 3.966 11 N -0.705 5.705 12 Si 0.964 3.036 13 H -0.252 1.252 14 H -0.262 1.262 15 H -0.252 1.252 16 C -0.058 4.058 17 N 0.032 4.968 18 O -0.361 6.361 19 O -0.269 6.269 20 C -0.039 4.039 21 H 0.048 0.952 22 H 0.090 0.910 23 H 0.047 0.953 24 H 0.125 0.875 25 H 0.140 0.860 26 H 0.309 0.691 27 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.549 1.144 -0.229 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.237 6.237 3 C -0.034 4.034 4 C -0.145 4.145 5 C -0.178 4.178 6 C -0.034 4.034 7 O 0.111 5.889 8 C -0.390 4.390 9 H 0.131 0.869 10 C -0.194 4.194 11 N -0.328 5.328 12 Si 0.782 3.218 13 H -0.176 1.176 14 H -0.186 1.186 15 H -0.176 1.176 16 C -0.162 4.162 17 N 0.440 4.560 18 O -0.499 6.499 19 O -0.426 6.426 20 C -0.059 4.059 21 H 0.066 0.934 22 H 0.109 0.891 23 H 0.066 0.934 24 H 0.143 0.857 25 H 0.157 0.843 26 H 0.123 0.877 27 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.090 1.032 -0.214 12.136 hybrid contribution -0.339 0.772 -0.010 0.843 sum -12.429 1.804 -0.225 12.561 Atomic orbital electron populations 1.22861 0.79809 1.02856 1.00634 1.85961 1.19972 1.26826 1.90945 1.17961 0.90800 0.83895 1.10766 1.20943 0.99080 0.91678 1.02842 1.20541 0.92349 0.98030 1.06872 1.18338 0.90482 0.82870 1.11662 1.80549 1.38595 1.11798 1.57985 1.22224 0.93709 0.84778 1.38282 0.86870 1.27706 0.96833 0.99233 0.95609 1.68993 1.12096 1.29082 1.22591 0.85383 0.79127 0.76225 0.81020 1.17616 1.18601 1.17591 1.18260 0.77141 0.92254 1.28552 1.49434 1.02940 1.01915 1.01752 1.96059 1.65228 1.21018 1.67582 1.96220 1.74721 1.10165 1.61510 1.19379 0.91522 0.96024 0.98948 0.93385 0.89114 0.93407 0.85734 0.84305 0.87703 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 15 2 O -0.32 -5.47 10.49 -19.41 -0.20 -5.67 15 3 C 0.01 0.23 6.69 -39.15 -0.26 -0.03 15 4 C -0.13 -2.17 9.03 -39.46 -0.36 -2.53 15 5 C -0.16 -3.05 9.12 -39.40 -0.36 -3.41 15 6 C 0.03 0.70 6.58 -39.05 -0.26 0.44 15 7 O -0.01 -0.20 7.20 -1.11 -0.01 -0.20 15 8 C -0.31 -6.81 9.47 34.10 0.32 -6.49 15 9 H 0.11 2.12 5.02 -52.48 -0.26 1.86 15 10 C 0.03 0.70 5.69 -15.21 -0.09 0.62 15 11 N -0.70 -16.14 13.66 55.99 0.76 -15.37 15 12 Si 0.96 14.32 29.64 -169.99 -5.04 9.28 15 13 H -0.25 -3.60 7.11 56.52 0.40 -3.20 15 14 H -0.26 -3.77 7.11 56.52 0.40 -3.36 15 15 H -0.25 -3.62 7.11 56.52 0.40 -3.22 15 16 C -0.06 -1.49 6.90 -79.77 -0.55 -2.04 15 17 N 0.03 0.94 4.98 34.05 0.17 1.11 15 18 O -0.36 -10.72 19.15 -31.57 -0.60 -11.33 15 19 O -0.27 -8.43 17.89 -39.22 -0.70 -9.14 15 20 C -0.04 -0.87 9.51 -39.45 -0.38 -1.25 15 21 H 0.05 0.50 7.66 -51.93 -0.40 0.10 15 22 H 0.09 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.05 0.50 7.66 -51.93 -0.40 0.10 15 24 H 0.12 1.65 6.29 -52.48 -0.33 1.32 15 25 H 0.14 2.27 5.69 -52.48 -0.30 1.97 15 26 H 0.31 6.05 8.26 -40.82 -0.34 5.71 15 27 H 0.14 3.09 7.57 -52.49 -0.40 2.69 15 LS Contribution 253.42 15.07 3.82 3.82 Total: -1.00 -32.07 253.42 -4.38 -36.45 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -1.64 Total: 4.35 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -0.93 Total: -13.29 kcal Atomic # 7 Polarization: -15.19 SS G_CDS: 0.93 Total: -14.26 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -1.52 Total: -26.34 kcal Atomic # 14 Polarization: 14.32 SS G_CDS: -5.04 Total: 9.28 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.07 -4.38 -36.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005429463.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.488 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds