Wall clock time and date at job start Sun Mar 29 2020 21:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35895 * 117.00288 * 2 1 4 4 C 1.38843 * 119.98037 * 0.02562 * 3 2 1 5 5 C 1.37970 * 120.01308 * 179.69982 * 4 3 2 6 6 C 1.38982 * 119.98531 * 0.55717 * 5 4 3 7 7 O 1.35715 * 120.01653 * 179.72014 * 6 5 4 8 8 C 1.22293 * 117.00048 * 354.26522 * 7 6 5 9 9 H 1.08005 * 119.99886 * 5.10096 * 8 7 6 10 10 C 1.46600 * 119.99927 * 185.09691 * 8 7 6 11 11 N 1.29382 * 120.00456 * 0.02562 * 10 8 7 12 12 Si 1.86809 * 119.99854 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47204 * 60.00294 * 12 10 8 14 14 H 1.48499 * 109.46772 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46942 * 299.99736 * 12 10 8 16 16 C 1.38931 * 119.96307 * 359.44267 * 6 5 4 17 17 N 1.48020 * 120.00454 * 180.25324 * 16 6 5 18 18 O 1.31698 * 119.99856 * 180.02562 * 17 16 6 19 19 O 1.31696 * 119.99914 * 0.02562 * 17 16 6 20 20 C 1.38017 * 119.99112 * 0.27943 * 16 6 5 21 21 H 1.08999 * 109.47106 * 59.99960 * 1 2 3 22 22 H 1.09000 * 109.47155 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46850 * 299.99551 * 1 2 3 24 24 H 1.08005 * 119.99432 * 359.97438 * 4 3 2 25 25 H 1.08004 * 120.00903 * 180.30360 * 5 4 3 26 26 H 0.96993 * 120.00214 * 180.02562 * 11 10 8 27 27 H 1.07994 * 119.99426 * 179.97438 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2894 2.3750 0.0005 5 6 1.9152 3.6047 0.0068 6 6 3.3030 3.6778 0.0009 7 8 3.9192 4.8871 0.0013 8 6 3.2047 5.8742 -0.1019 9 1 2.1302 5.7652 -0.1050 10 6 3.8068 7.2055 -0.2212 11 7 5.0940 7.3361 -0.2179 12 14 2.7155 8.7135 -0.3781 13 1 1.8435 8.8202 0.8191 14 1 3.5626 9.9286 -0.4840 15 1 1.8730 8.5904 -1.5948 16 6 4.0593 2.5124 0.0003 17 7 5.5375 2.5892 -0.0003 18 8 6.2543 1.4844 -0.0013 19 8 6.1359 3.7624 0.0001 20 6 3.4321 1.2830 -0.0001 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 0.2109 2.3181 0.0005 25 1 1.3266 4.5102 0.0122 26 1 5.4924 8.2170 -0.2965 27 1 4.0199 0.3770 -0.0010 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005429463.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:32 Heat of formation + Delta-G solvation = -14.002249 kcal Electronic energy + Delta-G solvation = -16727.555702 eV Core-core repulsion = 13649.653888 eV Total energy + Delta-G solvation = -3077.901814 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.71504 -40.62965 -38.37757 -36.92203 -36.11433 -33.46459 -32.07130 -30.90131 -28.59628 -27.79766 -26.27206 -23.88708 -22.72874 -21.21024 -20.07303 -18.90515 -17.95687 -17.70691 -17.24476 -16.85927 -16.61921 -16.42783 -16.11667 -15.43973 -15.17986 -14.43176 -14.14108 -13.68680 -13.40198 -13.25050 -12.94860 -12.68215 -12.15683 -11.74358 -11.69723 -11.40110 -10.67860 -10.61687 -10.48833 -10.11489 -9.91028 -9.12053 -6.27202 -1.21010 0.48616 0.86957 1.04327 1.38704 1.59051 1.80835 1.95782 2.06010 2.18848 2.70931 2.77839 3.33469 3.88893 3.99303 4.19903 4.32259 4.49647 4.58707 4.66297 4.82886 4.88355 4.95773 5.18360 5.22638 5.35474 5.71360 6.51830 6.64861 6.82440 7.11006 7.70246 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.023874 B = 0.008431 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.554650 B = 3320.399819 C = 4474.813064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.342 6.342 3 C 0.122 3.878 4 C -0.187 4.187 5 C -0.071 4.071 6 C -0.120 4.120 7 O -0.013 6.013 8 C -0.073 4.073 9 H 0.206 0.794 10 C -0.036 4.036 11 N -0.673 5.673 12 Si 1.063 2.937 13 H -0.216 1.216 14 H -0.254 1.254 15 H -0.219 1.219 16 C 0.016 3.984 17 N -0.021 5.021 18 O -0.595 6.595 19 O -0.526 6.526 20 C -0.170 4.170 21 H 0.073 0.927 22 H 0.115 0.885 23 H 0.072 0.928 24 H 0.189 0.811 25 H 0.199 0.801 26 H 0.349 0.651 27 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.803 11.718 -0.711 26.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.257 6.257 3 C 0.073 3.927 4 C -0.206 4.206 5 C -0.089 4.089 6 C -0.176 4.176 7 O 0.116 5.884 8 C -0.172 4.172 9 H 0.221 0.779 10 C -0.266 4.266 11 N -0.299 5.299 12 Si 0.869 3.131 13 H -0.138 1.138 14 H -0.177 1.177 15 H -0.141 1.141 16 C -0.109 4.109 17 N 0.296 4.704 18 O -0.677 6.677 19 O -0.617 6.617 20 C -0.191 4.191 21 H 0.091 0.909 22 H 0.133 0.867 23 H 0.091 0.909 24 H 0.206 0.794 25 H 0.216 0.784 26 H 0.166 0.834 27 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.635 11.326 -0.674 25.320 hybrid contribution 1.594 -0.176 0.063 1.605 sum -21.041 11.150 -0.611 23.820 Atomic orbital electron populations 1.23420 0.75838 1.05551 1.02929 1.86015 1.24049 1.26415 1.89185 1.18366 0.89380 0.85910 0.99033 1.21197 1.01407 0.89252 1.08754 1.21021 0.88600 1.00991 0.98254 1.18595 0.92383 0.79464 1.27201 1.80792 1.43078 1.14994 1.49491 1.26077 0.99109 0.85076 1.06956 0.77851 1.30654 0.99162 1.02084 0.94709 1.69059 1.15742 1.34104 1.10970 0.84143 0.76671 0.68543 0.83757 1.13812 1.17676 1.14074 1.18872 0.77149 0.94023 1.20898 1.48466 1.02307 0.99491 1.20136 1.95750 1.67096 1.22720 1.82177 1.95819 1.76277 1.11897 1.77678 1.19084 0.93313 0.94469 1.12278 0.90858 0.86678 0.90904 0.79444 0.78434 0.83350 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.42 15 2 O -0.34 -11.63 10.49 -92.37 -0.97 -12.60 15 3 C 0.12 4.84 6.69 22.55 0.15 4.99 15 4 C -0.19 -5.38 9.03 22.35 0.20 -5.18 15 5 C -0.07 -2.17 9.12 22.38 0.20 -1.96 15 6 C -0.12 -5.74 6.58 22.61 0.15 -5.59 15 7 O -0.01 -0.62 7.20 73.50 0.53 -0.09 15 8 C -0.07 -2.33 9.47 70.00 0.66 -1.67 15 9 H 0.21 3.59 5.02 -2.91 -0.01 3.58 15 10 C -0.04 -1.02 5.69 87.24 0.50 -0.52 15 11 N -0.67 -25.03 13.66 23.22 0.32 -24.71 15 12 Si 1.06 13.72 29.64 68.60 2.03 15.75 15 13 H -0.22 -2.11 7.11 99.48 0.71 -1.40 15 14 H -0.25 -3.43 7.11 99.48 0.71 -2.72 15 15 H -0.22 -2.23 7.11 99.48 0.71 -1.52 15 16 C 0.02 0.95 6.90 36.49 0.25 1.20 15 17 N -0.02 -1.59 4.98 -46.19 -0.23 -1.82 15 18 O -0.59 -49.71 19.15 3.52 0.07 -49.64 15 19 O -0.53 -42.37 17.89 10.84 0.19 -42.18 15 20 C -0.17 -9.27 9.51 22.35 0.21 -9.06 15 21 H 0.07 1.06 7.66 -2.39 -0.02 1.04 15 22 H 0.11 1.60 8.14 -2.39 -0.02 1.58 15 23 H 0.07 1.05 7.66 -2.38 -0.02 1.03 15 24 H 0.19 3.09 6.29 -2.91 -0.02 3.07 15 25 H 0.20 3.23 5.69 -2.91 -0.02 3.21 15 26 H 0.35 10.21 8.26 -92.71 -0.77 9.44 15 27 H 0.10 5.77 7.57 -2.91 -0.02 5.74 15 Total: -1.00 -115.21 253.42 6.61 -108.60 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 1.23 Total: 23.06 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 3.44 Total: -16.37 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.09 Total: -26.53 kcal Atomic # 8 Polarization: -104.33 SS G_CDS: -0.18 Total: -104.51 kcal Atomic # 14 Polarization: 13.72 SS G_CDS: 2.03 Total: 15.75 kcal Total: -115.21 6.61 -108.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005429463.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.602 kcal (2) G-P(sol) polarization free energy of solvation -115.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -108.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds