Wall clock time and date at job start Sun Mar 29 2020 21:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35898 * 117.00168 * 2 1 4 4 C 1.38603 * 120.08871 * 0.02562 * 3 2 1 5 5 C 1.38200 * 120.01178 * 179.97438 * 4 3 2 6 6 C 1.38374 * 120.20189 * 0.02562 * 5 4 3 7 7 N 1.48018 * 119.90590 * 180.02562 * 6 5 4 8 8 O 1.31697 * 120.00224 * 359.97438 * 7 6 5 9 9 O 1.31701 * 119.99891 * 179.97438 * 7 6 5 10 10 C 1.38098 * 120.18326 * 0.04043 * 6 5 4 11 11 C 1.38829 * 119.98628 * 359.93983 * 10 6 5 12 12 O 1.35719 * 120.10059 * 180.31703 * 11 10 6 13 13 C 1.22293 * 117.00384 * 354.28470 * 12 11 10 14 14 H 1.08007 * 119.99350 * 5.10467 * 13 12 11 15 15 C 1.46605 * 120.00234 * 185.11242 * 13 12 11 16 16 N 1.29377 * 120.00548 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99862 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47053 * 60.00124 * 17 15 13 19 19 H 1.48507 * 109.46938 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47503 * 300.00184 * 17 15 13 21 21 H 1.08994 * 109.47027 * 300.00379 * 1 2 3 22 22 H 1.08996 * 109.46698 * 60.00136 * 1 2 3 23 23 H 1.09005 * 109.47097 * 180.02562 * 1 2 3 24 24 H 1.07996 * 119.99509 * 359.97438 * 4 3 2 25 25 H 1.08006 * 119.89875 * 180.02562 * 5 4 3 26 26 H 1.08007 * 120.00437 * 179.97438 * 10 6 5 27 27 H 0.96999 * 120.00830 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2930 2.3744 0.0005 5 6 1.9221 3.6050 0.0011 6 6 3.3038 3.6804 0.0005 7 7 3.9708 5.0017 0.0017 8 8 3.2494 6.1035 0.0027 9 8 5.2857 5.0756 0.0017 10 6 4.0621 2.5262 -0.0014 11 6 3.4382 1.2860 -0.0015 12 8 4.1812 0.1503 0.0031 13 6 5.3928 0.2790 -0.1012 14 1 5.8324 1.2655 -0.1086 15 6 6.2486 -0.9058 -0.2166 16 7 5.7222 -2.0876 -0.2075 17 14 8.0994 -0.7091 -0.3767 18 1 8.6269 -0.0003 0.8168 19 1 8.7327 -2.0486 -0.4764 20 1 8.4098 0.0779 -1.5971 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.2144 2.3195 0.0005 25 1 1.3335 4.5105 0.0019 26 1 5.1404 2.5884 -0.0022 27 1 6.2884 -2.8715 -0.2834 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007827350.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:36 Heat of formation + Delta-G solvation = -1.122247 kcal Electronic energy + Delta-G solvation = -16597.342912 eV Core-core repulsion = 13519.999617 eV Total energy + Delta-G solvation = -3077.343295 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.45652 -40.58769 -39.99604 -37.83294 -35.48110 -34.82616 -31.97684 -31.51841 -28.68800 -27.54245 -26.74565 -23.60527 -23.11343 -20.72249 -20.32484 -19.06223 -18.94081 -17.79326 -17.22626 -17.09417 -16.81382 -16.30574 -16.02263 -15.89068 -15.40182 -14.34562 -14.14915 -13.90477 -13.47936 -13.13441 -12.79534 -12.51876 -12.26634 -12.20634 -12.16507 -12.08278 -11.85602 -11.54803 -11.07595 -10.05642 -9.34501 -8.86312 -5.85149 -1.69948 0.11359 0.22750 0.33952 1.31923 1.40655 1.44322 2.05829 2.24641 2.28556 2.79526 2.96854 3.58787 3.88489 3.90454 4.15779 4.32052 4.41084 4.45594 4.63791 4.75863 4.81058 4.91003 4.96289 4.99875 5.41027 5.68215 5.80635 6.27759 6.49837 7.80678 8.34354 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.017953 B = 0.009623 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.279254 B = 2909.147055 C = 4450.640100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.324 6.324 3 C 0.142 3.858 4 C -0.165 4.165 5 C -0.079 4.079 6 C 0.005 3.995 7 N 0.002 4.998 8 O -0.174 6.174 9 O -0.262 6.262 10 C -0.215 4.215 11 C 0.050 3.950 12 O -0.118 6.118 13 C -0.443 4.443 14 H 0.090 0.910 15 C 0.005 3.995 16 N -0.846 5.846 17 Si 1.013 2.987 18 H -0.258 1.258 19 H -0.254 1.254 20 H -0.258 1.258 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.116 0.884 24 H 0.197 0.803 25 H 0.176 0.824 26 H 0.135 0.865 27 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.445 2.168 -0.061 9.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.236 6.236 3 C 0.094 3.906 4 C -0.185 4.185 5 C -0.100 4.100 6 C -0.083 4.083 7 N 0.468 4.532 8 O -0.373 6.373 9 O -0.435 6.435 10 C -0.237 4.237 11 C -0.005 4.005 12 O -0.016 6.016 13 C -0.520 4.520 14 H 0.108 0.892 15 C -0.207 4.207 16 N -0.474 5.474 17 Si 0.831 3.169 18 H -0.182 1.182 19 H -0.178 1.178 20 H -0.183 1.183 21 H 0.098 0.902 22 H 0.098 0.902 23 H 0.134 0.866 24 H 0.214 0.786 25 H 0.193 0.807 26 H 0.152 0.848 27 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.494 0.812 -0.054 9.529 hybrid contribution 1.195 0.544 -0.027 1.314 sum -8.299 1.357 -0.081 8.410 Atomic orbital electron populations 1.23580 0.75365 1.06087 1.03421 1.86245 1.24456 1.25832 1.87081 1.18787 0.88450 0.86621 0.96776 1.21135 1.01781 0.87932 1.07639 1.20793 0.89439 1.00602 0.99137 1.20060 0.93126 0.78211 1.16940 1.50661 1.02783 1.04826 0.94969 1.96127 1.63152 1.23149 1.54836 1.96250 0.90167 1.96253 1.60834 1.19964 1.01088 0.89345 1.13352 1.18739 0.89656 0.85695 1.06450 1.80411 1.19885 1.28513 1.72794 1.21274 0.81965 0.95583 1.53202 0.89249 1.28053 1.05516 0.92354 0.94741 1.68965 1.41244 1.00026 1.37191 0.84732 0.72512 0.79342 0.80349 1.18205 1.17760 1.18257 0.90200 0.90244 0.86566 0.78562 0.80697 0.84787 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 15 2 O -0.32 -11.48 10.28 -78.62 -0.81 -12.29 15 3 C 0.14 5.32 6.71 22.64 0.15 5.48 15 4 C -0.17 -4.57 9.03 22.35 0.20 -4.37 15 5 C -0.08 -2.42 9.57 22.29 0.21 -2.21 15 6 C 0.00 0.19 6.88 36.37 0.25 0.44 15 7 N 0.00 0.08 4.98 -46.46 -0.23 -0.15 15 8 O -0.17 -6.85 19.14 3.52 0.07 -6.79 15 9 O -0.26 -12.34 19.14 3.51 0.07 -12.28 15 10 C -0.21 -9.88 8.65 22.38 0.19 -9.69 15 11 C 0.05 2.36 6.60 22.70 0.15 2.51 15 12 O -0.12 -6.57 9.07 66.06 0.60 -5.98 15 13 C -0.44 -24.38 9.47 70.01 0.66 -23.72 15 14 H 0.09 4.79 5.03 -2.91 -0.01 4.78 15 15 C 0.00 0.24 5.69 87.24 0.50 0.73 15 16 N -0.85 -45.40 13.66 23.22 0.32 -45.08 15 17 Si 1.01 39.24 29.64 68.60 2.03 41.28 15 18 H -0.26 -9.75 7.11 99.48 0.71 -9.05 15 19 H -0.25 -8.94 7.11 99.48 0.71 -8.24 15 20 H -0.26 -9.79 7.11 99.48 0.71 -9.08 15 21 H 0.08 1.19 7.66 -2.39 -0.02 1.17 15 22 H 0.08 1.19 7.66 -2.39 -0.02 1.17 15 23 H 0.12 1.89 8.14 -2.38 -0.02 1.87 15 24 H 0.20 3.26 6.30 -2.91 -0.02 3.24 15 25 H 0.18 4.21 7.57 -2.91 -0.02 4.19 15 26 H 0.13 6.65 5.20 -2.91 -0.02 6.64 15 27 H 0.30 14.18 8.26 -92.71 -0.77 13.41 15 Total: -1.00 -67.40 255.49 6.71 -60.70 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.23 Total: 10.11 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: 3.43 Total: -29.53 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.09 Total: -45.23 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -0.07 Total: -37.33 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.28 kcal Total: -67.40 6.71 -60.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007827350.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.576 kcal (2) G-P(sol) polarization free energy of solvation -67.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds